#------------------------------------------------------------------------------
#$Date: 2018-10-05 15:19:55 +0300 (Fri, 05 Oct 2018) $
#$Revision: 211332 $
#$URL: file:///home/coder/svn-repositories/cod/cif/2/10/76/2107617.cif $
#------------------------------------------------------------------------------
#
# This file is available in the Crystallography Open Database (COD),
# http://www.crystallography.net/. The original data for this entry
# were provided by IUCr Journals, http://journals.iucr.org/.
#
# The file may be used within the scientific community so long as
# proper attribution is given to the journal article from which the
# data were obtained.
#
data_2107617
loop_
_publ_author_name
'Tidey, Jeremiah P.'
'Wong, Henry L. S.'
'McMaster, Jonathan'
'Schröder, Martin'
'Blake, Alexander J.'
_publ_section_title
;
 High-pressure studies of three polymorphs of a palladium(II) oxathioether
 macrocyclic complex
;
_journal_issue                   3
_journal_name_full               'Acta Crystallographica Section B'
_journal_page_first              357
_journal_page_last               371
_journal_paper_doi               10.1107/S2052520616007435
_journal_volume                  72
_journal_year                    2016
_chemical_formula_moiety         'C6 H12 Cl2 O Pd S2'
_chemical_formula_sum            'C6 H12 Cl2 O Pd S2'
_chemical_formula_weight         341.58
_space_group_crystal_system      monoclinic
_space_group_IT_number           14
_space_group_name_Hall           '-P 2yn'
_space_group_name_H-M_alt        'P 1 21/n 1'
_symmetry_space_group_name_Hall  '-P 2yn'
_symmetry_space_group_name_H-M   'P 1 21/n 1'
_atom_sites_solution_hydrogens   geom
_atom_sites_solution_primary     isomor
_atom_sites_solution_secondary   difamp
_audit_creation_method
;
Olex2 1.2
(compiled 2015.01.26 svn.r3150 for OlexSys, GUI svn.r4998)
;
_cell_angle_alpha                90
_cell_angle_beta                 96.687(3)
_cell_angle_gamma                90
_cell_formula_units_Z            4
_cell_length_a                   6.9770(2)
_cell_length_b                   11.2898(3)
_cell_length_c                   13.3041(4)
_cell_measurement_reflns_used    3235
_cell_measurement_temperature    99(13)
_cell_measurement_theta_max      74.1144
_cell_measurement_theta_min      3.3419
_cell_volume                     1040.82(5)
_computing_cell_refinement
;
CrysAlisPro, Agilent Technologies,
Version 1.171.36.20 (release 27-06-2012 CrysAlis171 .NET)
(compiled Jul 11 2012,15:38:31)
;
_computing_data_collection
;
CrysAlisPro, Agilent Technologies,
Version 1.171.36.20 (release 27-06-2012 CrysAlis171 .NET)
(compiled Jul 11 2012,15:38:31)
;
_computing_data_reduction
;
CrysAlisPro, Agilent Technologies,
Version 1.171.36.20 (release 27-06-2012 CrysAlis171 .NET)
(compiled Jul 11 2012,15:38:31)
;
_computing_molecular_graphics    'Olex2 (Dolomanov et al., 2009)'
_computing_publication_material  'Olex2 (Dolomanov et al., 2009)'
_computing_structure_refinement  'ShelXL (Sheldrick, 2008)'
_computing_structure_solution    'XS (Sheldrick, 2008)'
_diffrn_ambient_temperature      99(13)
_diffrn_detector_area_resol_mean 10.3613
_diffrn_measured_fraction_theta_full 0.996
_diffrn_measured_fraction_theta_max 0.967
_diffrn_measurement_device_type  'SuperNova, Single source at offset), Atlas'
_diffrn_measurement_method       'ω scans'
_diffrn_radiation_monochromator  mirror
_diffrn_radiation_type           CuK\a
_diffrn_radiation_wavelength     1.54184
_diffrn_reflns_av_R_equivalents  0.0138
_diffrn_reflns_limit_h_max       8
_diffrn_reflns_limit_h_min       -8
_diffrn_reflns_limit_k_max       11
_diffrn_reflns_limit_k_min       -13
_diffrn_reflns_limit_l_max       16
_diffrn_reflns_limit_l_min       -16
_diffrn_reflns_number            4541
_diffrn_reflns_theta_full        67.684
_diffrn_reflns_theta_max         74.282
_diffrn_reflns_theta_min         5.153
_exptl_absorpt_coefficient_mu    22.471
_exptl_absorpt_correction_T_max  0.541
_exptl_absorpt_correction_T_min  0.089
_exptl_absorpt_correction_type   gaussian
_exptl_absorpt_process_details
;
CrysAlisPro, Agilent Technologies,
Version 1.171.36.20 (release 27-06-2012 CrysAlis171 .NET)
(compiled Jul 11 2012,15:38:31)
Numerical absorption correction based on gaussian integration over
   a multifaceted crystal model
;
_exptl_crystal_colour            orange
_exptl_crystal_density_diffrn    2.180
_exptl_crystal_description       block
_exptl_crystal_F_000             672
_exptl_crystal_size_max          0.2109
_exptl_crystal_size_mid          0.1428
_exptl_crystal_size_min          0.0461
_refine_diff_density_max         0.454
_refine_diff_density_min         -0.711
_refine_ls_extinction_coef       0.00091(6)
_refine_ls_extinction_expression Fc^*^=kFc[1+0.001xFc²λ³/sin(2θ)]^-1/4^
_refine_ls_extinction_method     'SHELXL-2014/7 (Sheldrick 2014'
_refine_ls_goodness_of_fit_ref   1.101
_refine_ls_hydrogen_treatment    constr
_refine_ls_matrix_type           full
_refine_ls_number_parameters     110
_refine_ls_number_reflns         2058
_refine_ls_number_restraints     0
_refine_ls_restrained_S_all      1.101
_refine_ls_R_factor_all          0.0195
_refine_ls_R_factor_gt           0.0190
_refine_ls_shift/su_max          0.001
_refine_ls_shift/su_mean         0.000
_refine_ls_structure_factor_coef Fsqd
_refine_ls_weighting_details
'w=1/[σ²(Fo²)+(0.0305P)²+0.5833P] where P=(Fo²+2Fc²)/3'
_refine_ls_weighting_scheme      calc
_refine_ls_wR_factor_gt          0.0494
_refine_ls_wR_factor_ref         0.0498
_reflns_number_gt                2017
_reflns_number_total             2058
_reflns_threshold_expression     'I > 2σ(I)'
_cod_data_source_file            xk5029sup1.cif
_cod_data_source_block           cPdT5
_cod_database_code               2107617
_cod_database_fobs_code          2107617
_shelx_space_group_comment
;
The symmetry employed for this shelxl refinement is uniquely defined
by the following loop, which should always be used as a source of
symmetry information in preference to the above space-group names.
They are only intended as comments.
;
_shelx_estimated_absorpt_t_min   0.088
_shelx_estimated_absorpt_t_max   0.424
loop_
_space_group_symop_operation_xyz
'x, y, z'
'-x+1/2, y+1/2, -z+1/2'
'-x, -y, -z'
'x-1/2, -y-1/2, z-1/2'
loop_
_atom_site_type_symbol
_atom_site_label
_atom_site_fract_x
_atom_site_fract_y
_atom_site_fract_z
_atom_site_U_iso_or_equiv
_atom_site_adp_type
_atom_site_calc_flag
_atom_site_occupancy
Pd Pd1 0.09739(2) 0.22249(2) 0.79171(2) 0.01189(8) Uani d 1
S S7 0.22609(7) 0.28625(4) 0.65256(4) 0.01358(12) Uani d 1
S S4 0.34595(7) 0.30536(5) 0.89161(4) 0.01445(12) Uani d 1
Cl Cl2 -0.15492(7) 0.14360(4) 0.68183(4) 0.01637(12) Uani d 1
Cl Cl1 -0.03274(8) 0.16398(5) 0.93621(4) 0.02477(13) Uani d 1
O O1 0.1136(2) 0.51845(13) 0.75734(11) 0.0167(3) Uani d 1
C C5 0.5249(3) 0.3242(2) 0.80432(16) 0.0175(4) Uani d 1
H H5A 0.6222 0.3795 0.8336 0.021 Uiso calc 1
H H5B 0.5880 0.2488 0.7966 0.021 Uiso calc 1
C C9 -0.0288(3) 0.47230(19) 0.68134(16) 0.0175(4) Uani d 1
H H9A -0.1059 0.5366 0.6497 0.021 Uiso calc 1
H H9B -0.1139 0.4188 0.7120 0.021 Uiso calc 1
C C2 0.0844(3) 0.4986(2) 0.86025(15) 0.0156(4) Uani d 1
H H2A -0.0157 0.4396 0.8637 0.019 Uiso calc 1
H H2B 0.0428 0.5715 0.8897 0.019 Uiso calc 1
C C3 0.2708(3) 0.45625(19) 0.91911(15) 0.0156(4) Uani d 1
H H3A 0.2574 0.4613 0.9907 0.019 Uiso calc 1
H H3B 0.3732 0.5102 0.9058 0.019 Uiso calc 1
C C6 0.4446(3) 0.3688(2) 0.70081(16) 0.0171(4) Uani d 1
H H6A 0.5411 0.3598 0.6544 0.021 Uiso calc 1
H H6B 0.4141 0.4523 0.7048 0.021 Uiso calc 1
C C8 0.0703(3) 0.40683(19) 0.60241(15) 0.0169(4) Uani d 1
H H8A 0.1467 0.4629 0.5688 0.020 Uiso calc 1
H H8B -0.0276 0.3751 0.5518 0.020 Uiso calc 1
loop_
_atom_type_symbol
_atom_type_description
_atom_type_scat_dispersion_real
_atom_type_scat_dispersion_imag
_atom_type_scat_source
C C 0.0181 0.0091 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4'
H H 0.0000 0.0000 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4'
O O 0.0492 0.0322 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4'
S S 0.3331 0.5567 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4'
Cl Cl 0.3639 0.7018 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4'
Pd Pd 0.1215 3.9337 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4'
loop_
_exptl_crystal_face_index_h
_exptl_crystal_face_index_k
_exptl_crystal_face_index_l
_exptl_crystal_face_perp_dist
0 0 -9 0.0151
4 2 -1 0.0924
0 7 0 0.0758
0 -1 9 0.0214
-4 0 3 0.0863
0 -7 -1 0.0638
loop_
_geom_angle_atom_site_label_1
_geom_angle_atom_site_label_2
_geom_angle_atom_site_label_3
_geom_angle
S7 Pd1 Cl2 87.200(18)
S7 Pd1 Cl1 177.995(19)
S4 Pd1 S7 89.944(19)
S4 Pd1 Cl2 176.966(18)
S4 Pd1 Cl1 88.745(19)
Cl1 Pd1 Cl2 94.083(18)
C6 S7 Pd1 105.50(7)
C8 S7 Pd1 105.10(7)
C8 S7 C6 100.65(10)
C5 S4 Pd1 102.14(7)
C5 S4 C3 104.65(10)
C3 S4 Pd1 106.53(7)
C2 O1 C9 117.18(16)
S4 C5 H5A 108.7
S4 C5 H5B 108.7
H5A C5 H5B 107.6
C6 C5 S4 114.38(14)
C6 C5 H5A 108.7
C6 C5 H5B 108.7
O1 C9 H9A 109.8
O1 C9 H9B 109.8
O1 C9 C8 109.43(17)
H9A C9 H9B 108.2
C8 C9 H9A 109.8
C8 C9 H9B 109.8
O1 C2 H2A 109.7
O1 C2 H2B 109.7
O1 C2 C3 109.62(17)
H2A C2 H2B 108.2
C3 C2 H2A 109.7
C3 C2 H2B 109.7
S4 C3 H3A 108.3
S4 C3 H3B 108.3
C2 C3 S4 116.01(14)
C2 C3 H3A 108.3
C2 C3 H3B 108.3
H3A C3 H3B 107.4
S7 C6 H6A 109.5
S7 C6 H6B 109.5
C5 C6 S7 110.73(15)
C5 C6 H6A 109.5
C5 C6 H6B 109.5
H6A C6 H6B 108.1
S7 C8 H8A 108.7
S7 C8 H8B 108.7
C9 C8 S7 114.33(15)
C9 C8 H8A 108.7
C9 C8 H8B 108.7
H8A C8 H8B 107.6
loop_
_geom_bond_atom_site_label_1
_geom_bond_atom_site_label_2
_geom_bond_distance
Pd1 S7 2.2668(5)
Pd1 S4 2.2610(5)
Pd1 Cl2 2.3302(5)
Pd1 Cl1 2.3158(5)
S7 C6 1.838(2)
S7 C8 1.820(2)
S4 C5 1.814(2)
S4 C3 1.832(2)
O1 C9 1.430(2)
O1 C2 1.425(2)
C5 H5A 0.9700
C5 H5B 0.9700
C5 C6 1.511(3)
C9 H9A 0.9700
C9 H9B 0.9700
C9 C8 1.515(3)
C2 H2A 0.9700
C2 H2B 0.9700
C2 C3 1.516(3)
C3 H3A 0.9700
C3 H3B 0.9700
C6 H6A 0.9700
C6 H6B 0.9700
C8 H8A 0.9700
C8 H8B 0.9700
loop_
_geom_hbond_atom_site_label_D
_geom_hbond_atom_site_label_H
_geom_hbond_atom_site_label_A
_geom_hbond_site_symmetry_A
_geom_hbond_distance_DH
_geom_hbond_distance_HA
_geom_hbond_distance_DA
_geom_hbond_angle_DHA
C5 H5B Cl2 1_655 0.97 2.76 3.557(2) 140.4
C3 H3A Cl2 4_666 0.97 2.81 3.652(2) 146.0
C3 H3B Cl2 2_556 0.97 2.83 3.781(2) 165.7
C6 H6B Cl2 2_556 0.97 3.03 3.699(2) 127.5
C6 H6B Cl1 2_556 0.97 3.21 3.882(2) 128.3
C8 H8A Cl1 2_556 0.97 3.53 4.415(2) 153.0
loop_
_geom_torsion_atom_site_label_1
_geom_torsion_atom_site_label_2
_geom_torsion_atom_site_label_3
_geom_torsion_atom_site_label_4
_geom_torsion
Pd1 S7 C6 C5 26.80(17)
Pd1 S7 C8 C9 28.32(17)
Pd1 S4 C5 C6 41.95(17)
Pd1 S4 C3 C2 -8.81(17)
S4 C5 C6 S7 -46.4(2)
O1 C9 C8 S7 57.7(2)
O1 C2 C3 S4 -71.5(2)
C5 S4 C3 C2 98.91(17)
C9 O1 C2 C3 133.83(18)
C2 O1 C9 C8 -132.34(19)
C3 S4 C5 C6 -68.97(18)
C6 S7 C8 C9 -81.08(17)
C8 S7 C6 C5 135.89(16)
