#------------------------------------------------------------------------------
#$Date: 2018-06-20 18:19:25 +0300 (Wed, 20 Jun 2018) $
#$Revision: 208565 $
#$URL: file:///home/coder/svn-repositories/cod/cif/7/23/09/7230975.cif $
#------------------------------------------------------------------------------
#
# This file is available in the Crystallography Open Database (COD),
# http://www.crystallography.net/
#
# All data on this site have been placed in the public domain by the
# contributors.
#
data_7230975
loop_
_publ_author_name
'Sun, Jing'
'Zhang, Yu'
'Yan, Chao-Guo'
_publ_section_title
;
 Tandem four-component reaction for efficient synthesis of
 dihydrothiophene with substituted amino acid ethyl esters
;
_journal_issue                   40
_journal_name_full               'RSC Advances'
_journal_page_first              22498
_journal_paper_doi               10.1039/C8RA03605E
_journal_volume                  8
_journal_year                    2018
_chemical_absolute_configuration ad
_chemical_formula_moiety         'C25 H24 N4 O4 S'
_chemical_formula_sum            'C25 H24 N4 O4 S'
_chemical_formula_weight         476.54
_space_group_crystal_system      monoclinic
_space_group_IT_number           5
_space_group_name_Hall           'C 2y'
_space_group_name_H-M_alt        'C 1 2 1'
_symmetry_space_group_name_Hall  'C 2y'
_symmetry_space_group_name_H-M   'C 1 2 1'
_atom_sites_solution_hydrogens   geom
_audit_creation_method           SHELXL-2014/7
_audit_update_record
;
2018-02-14 deposited with the CCDC.
2018-06-13 downloaded from the CCDC.
;
_cell_angle_alpha                90
_cell_angle_beta                 112.887(5)
_cell_angle_gamma                90
_cell_formula_units_Z            4
_cell_length_a                   18.926(3)
_cell_length_b                   9.4145(14)
_cell_length_c                   15.008(3)
_cell_measurement_reflns_used    4353
_cell_measurement_temperature    293(2)
_cell_measurement_theta_max      25.23
_cell_measurement_theta_min      2.34
_cell_volume                     2463.6(7)
_computing_structure_refinement  'SHELXL-2014/7 (Sheldrick, 2014)'
_diffrn_ambient_temperature      293(2)
_diffrn_measured_fraction_theta_full 0.997
_diffrn_measured_fraction_theta_max 0.997
_diffrn_measurement_device_type  'CCD area detector'
_diffrn_measurement_method       'phi and omega scans'
_diffrn_radiation_source         'fine-focus sealed tube'
_diffrn_radiation_type           MoK\a
_diffrn_radiation_wavelength     0.71073
_diffrn_reflns_av_R_equivalents  0.0470
_diffrn_reflns_av_unetI/netI     0.0787
_diffrn_reflns_Laue_measured_fraction_full 0.997
_diffrn_reflns_Laue_measured_fraction_max 0.997
_diffrn_reflns_limit_h_max       18
_diffrn_reflns_limit_h_min       -24
_diffrn_reflns_limit_k_max       12
_diffrn_reflns_limit_k_min       -12
_diffrn_reflns_limit_l_max       19
_diffrn_reflns_limit_l_min       -19
_diffrn_reflns_number            12871
_diffrn_reflns_point_group_measured_fraction_full 0.981
_diffrn_reflns_point_group_measured_fraction_max 0.967
_diffrn_reflns_theta_full        25.242
_diffrn_reflns_theta_max         27.552
_diffrn_reflns_theta_min         2.336
_exptl_absorpt_coefficient_mu    0.169
_exptl_absorpt_correction_T_max  0.967
_exptl_absorpt_correction_T_min  0.957
_exptl_absorpt_correction_type   multi-scan
_exptl_absorpt_process_details   sadabs
_exptl_crystal_colour            colorless
_exptl_crystal_density_diffrn    1.285
_exptl_crystal_description       block
_exptl_crystal_F_000             1000
_exptl_crystal_size_max          0.260
_exptl_crystal_size_mid          0.220
_exptl_crystal_size_min          0.200
_refine_diff_density_max         0.168
_refine_diff_density_min         -0.189
_refine_diff_density_rms         0.039
_refine_ls_abs_structure_details
;
 Flack x determined using 1181 quotients [(I+)-(I-)]/[(I+)+(I-)]
 (Parsons, Flack and Wagner, Acta Cryst. B69 (2013) 249-259).
;
_refine_ls_abs_structure_Flack   0.02(5)
_refine_ls_extinction_method     none
_refine_ls_goodness_of_fit_ref   1.003
_refine_ls_hydrogen_treatment    constr
_refine_ls_matrix_type           full
_refine_ls_number_parameters     309
_refine_ls_number_reflns         5518
_refine_ls_number_restraints     16
_refine_ls_restrained_S_all      1.018
_refine_ls_R_factor_all          0.1100
_refine_ls_R_factor_gt           0.0535
_refine_ls_shift/su_max          0.000
_refine_ls_shift/su_mean         0.000
_refine_ls_structure_factor_coef Fsqd
_refine_ls_weighting_details
'w=1/[σ²(Fo²)+(0.0552P)²] where P=(Fo²+2Fc²)/3'
_refine_ls_weighting_scheme      calc
_refine_ls_wR_factor_gt          0.0994
_refine_ls_wR_factor_ref         0.1158
_reflns_Friedel_coverage         0.830
_reflns_Friedel_fraction_full    0.963
_reflns_Friedel_fraction_max     0.934
_reflns_number_gt                3436
_reflns_number_total             5518
_reflns_threshold_expression     'I > 2σ(I)'
_cod_data_source_file            c8ra03605e2.cif
_cod_data_source_block           3d
_cod_original_cell_volume        2463.5(7)
_cod_database_code               7230975
_shelx_shelxl_version_number     2014/7
_shelx_space_group_comment
;
The symmetry employed for this shelxl refinement is uniquely defined
by the following loop, which should always be used as a source of
symmetry information in preference to the above space-group names.
They are only intended as comments.
;
_shelx_estimated_absorpt_t_min   0.957
_shelx_estimated_absorpt_t_max   0.967
loop_
_space_group_symop_operation_xyz
'x, y, z'
'-x, y, -z'
'x+1/2, y+1/2, z'
'-x+1/2, y+1/2, -z'
loop_
_atom_site_label
_atom_site_type_symbol
_atom_site_fract_x
_atom_site_fract_y
_atom_site_fract_z
_atom_site_U_iso_or_equiv
_atom_site_adp_type
_atom_site_occupancy
_atom_site_site_symmetry_order
_atom_site_calc_flag
_atom_site_refinement_flags_posn
_atom_site_refinement_flags_adp
C1 C 0.2729(2) 0.5680(4) 0.2513(2) 0.0473(10) Uani 1 1 d . .
H1 H 0.3202 0.6001 0.2538 0.057 Uiso 1 1 calc R U
C2 C 0.2354(3) 0.4606(4) 0.1887(3) 0.0573(11) Uani 1 1 d . .
H2 H 0.2576 0.4216 0.1489 0.069 Uiso 1 1 calc R U
C3 C 0.1659(3) 0.4093(4) 0.1835(3) 0.0611(13) Uani 1 1 d . .
C4 C 0.1226(3) 0.2967(6) 0.1099(4) 0.0937(17) Uani 1 1 d . .
H4A H 0.1570 0.2210 0.1111 0.141 Uiso 1 1 calc R U
H4B H 0.1019 0.3382 0.0465 0.141 Uiso 1 1 calc R U
H4C H 0.0816 0.2597 0.1256 0.141 Uiso 1 1 calc R U
C5 C 0.1353(3) 0.4669(5) 0.2448(3) 0.0691(13) Uani 1 1 d . .
H5 H 0.0894 0.4311 0.2444 0.083 Uiso 1 1 calc R U
C6 C 0.1713(3) 0.5771(4) 0.3069(3) 0.0568(11) Uani 1 1 d . .
H6 H 0.1487 0.6163 0.3462 0.068 Uiso 1 1 calc R U
C7 C 0.2404(2) 0.6288(4) 0.3108(2) 0.0398(9) Uani 1 1 d . .
C8 C 0.3425(2) 0.7691(4) 0.4481(2) 0.0453(10) Uani 1 1 d . .
C9 C 0.2752(2) 0.7582(4) 0.3684(2) 0.0407(9) Uani 1 1 d . .
C10 C 0.1678(2) 0.9179(4) 0.2625(3) 0.0527(11) Uani 1 1 d . .
C11 C 0.2384(2) 0.8921(4) 0.3414(3) 0.0440(10) Uani 1 1 d . .
C12 C 0.2789(2) 1.0039(4) 0.3993(3) 0.0463(10) Uani 1 1 d . .
C13 C 0.3964(3) 0.6655(4) 0.5111(3) 0.0507(11) Uani 1 1 d . .
C14 C 0.4107(2) 0.4070(4) 0.5492(3) 0.0451(10) Uani 1 1 d . .
C15 C 0.5590(3) -0.0248(5) 0.7181(3) 0.0698(14) Uani 1 1 d . .
H15 H 0.5108 -0.0310 0.6683 0.084 Uiso 1 1 calc R U
C16 C 0.5872(3) -0.1397(5) 0.7778(4) 0.0820(15) Uani 1 1 d . .
H16 H 0.5581 -0.2221 0.7682 0.098 Uiso 1 1 calc R U
C17 C 0.6568(3) -0.1333(6) 0.8500(4) 0.0802(15) Uani 1 1 d . .
H17 H 0.6758 -0.2106 0.8910 0.096 Uiso 1 1 calc R U
C18 C 0.6999(3) -0.0114(6) 0.8630(4) 0.0850(17) Uani 1 1 d . .
H18 H 0.7482 -0.0062 0.9128 0.102 Uiso 1 1 calc R U
C19 C 0.6717(3) 0.1024(5) 0.8024(3) 0.0687(13) Uani 1 1 d . .
H19 H 0.7017 0.1834 0.8109 0.082 Uiso 1 1 calc R U
C20 C 0.6000(2) 0.0990(4) 0.7296(3) 0.0512(10) Uani 1 1 d . .
C21 C 0.5672(3) 0.2260(5) 0.6660(3) 0.0602(11) Uani 1 1 d . .
H21A H 0.5417 0.1940 0.5997 0.072 Uiso 1 1 calc R U
H21B H 0.6090 0.2879 0.6688 0.072 Uiso 1 1 calc R U
C22 C 0.5096(2) 0.3125(4) 0.6942(2) 0.0462(10) Uani 1 1 d . .
H22 H 0.4690 0.2492 0.6957 0.055 Uiso 1 1 calc R U
C23 C 0.5498(2) 0.3788(4) 0.7930(3) 0.0469(10) Uani 1 1 d . .
C24 C 0.5957(3) 0.3321(6) 0.9607(3) 0.0917(16) Uani 1 1 d . U
H24A H 0.6421 0.3813 0.9659 0.110 Uiso 1 1 calc R U
H24B H 0.5650 0.3960 0.9816 0.110 Uiso 1 1 calc R U
C25 C 0.6147(4) 0.2057(7) 1.0207(3) 0.122(2) Uani 1 1 d . U
H25A H 0.5689 0.1525 1.0100 0.184 Uiso 1 1 calc R U
H25B H 0.6382 0.2327 1.0875 0.184 Uiso 1 1 calc R U
H25C H 0.6498 0.1481 1.0043 0.184 Uiso 1 1 calc R U
N1 N 0.1115(2) 0.9467(5) 0.2006(3) 0.0800(11) Uani 1 1 d . .
N2 N 0.2575(2) 1.1408(3) 0.3917(3) 0.0635(10) Uani 1 1 d . .
H2A H 0.2147 1.1666 0.3473 0.076 Uiso 1 1 calc R U
H2B H 0.2867 1.2026 0.4311 0.076 Uiso 1 1 calc R U
N3 N 0.37758(19) 0.5252(3) 0.4920(2) 0.0517(9) Uani 1 1 d . .
H3 H 0.3405 0.5076 0.4377 0.062 Uiso 1 1 calc R U
N4 N 0.47545(18) 0.4263(3) 0.6255(2) 0.0539(9) Uani 1 1 d . .
H4 H 0.4977 0.5078 0.6346 0.065 Uiso 1 1 calc R U
O1 O 0.45269(19) 0.7034(3) 0.5801(2) 0.0785(10) Uani 1 1 d . .
O2 O 0.37896(17) 0.2915(3) 0.52671(18) 0.0614(8) Uani 1 1 d . .
O3 O 0.57731(18) 0.4957(3) 0.8061(2) 0.0677(9) Uani 1 1 d . .
O4 O 0.55293(16) 0.2885(3) 0.86131(17) 0.0589(8) Uani 1 1 d . U
S1 S 0.36284(6) 0.94460(10) 0.48759(6) 0.0558(3) Uani 1 1 d . .
loop_
_atom_type_symbol
_atom_type_description
_atom_type_scat_dispersion_real
_atom_type_scat_dispersion_imag
_atom_type_scat_source
C C 0.0033 0.0016 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4'
H H 0.0000 0.0000 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4'
N N 0.0061 0.0033 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4'
O O 0.0106 0.0060 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4'
S S 0.1246 0.1234 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4'
loop_
_geom_angle_atom_site_label_1
_geom_angle_atom_site_label_2
_geom_angle_atom_site_label_3
_geom_angle
C2 C1 C7 120.1(4)
C2 C1 H1 120.0
C7 C1 H1 120.0
C3 C2 C1 121.7(4)
C3 C2 H2 119.1
C1 C2 H2 119.1
C2 C3 C5 117.8(4)
C2 C3 C4 121.3(5)
C5 C3 C4 120.8(5)
C3 C4 H4A 109.5
C3 C4 H4B 109.5
H4A C4 H4B 109.5
C3 C4 H4C 109.5
H4A C4 H4C 109.5
H4B C4 H4C 109.5
C3 C5 C6 121.4(4)
C3 C5 H5 119.3
C6 C5 H5 119.3
C7 C6 C5 120.3(4)
C7 C6 H6 119.8
C5 C6 H6 119.8
C6 C7 C1 118.6(4)
C6 C7 C9 120.8(4)
C1 C7 C9 120.2(4)
C9 C8 C13 133.9(3)
C9 C8 S1 112.0(3)
C13 C8 S1 113.9(3)
C8 C9 C11 111.7(3)
C8 C9 C7 128.2(3)
C11 C9 C7 120.2(3)
N1 C10 C11 176.1(4)
C12 C11 C10 120.2(3)
C12 C11 C9 113.8(3)
C10 C11 C9 126.0(3)
N2 C12 C11 126.8(4)
N2 C12 S1 122.4(3)
C11 C12 S1 110.8(3)
O1 C13 N3 122.2(3)
O1 C13 C8 121.0(3)
N3 C13 C8 116.6(4)
O2 C14 N4 123.4(3)
O2 C14 N3 118.9(3)
N4 C14 N3 117.7(3)
C20 C15 C16 122.0(4)
C20 C15 H15 119.0
C16 C15 H15 119.0
C17 C16 C15 120.1(5)
C17 C16 H16 120.0
C15 C16 H16 120.0
C16 C17 C18 119.5(4)
C16 C17 H17 120.3
C18 C17 H17 120.3
C19 C18 C17 120.1(4)
C19 C18 H18 120.0
C17 C18 H18 120.0
C18 C19 C20 121.3(5)
C18 C19 H19 119.4
C20 C19 H19 119.4
C15 C20 C19 117.1(4)
C15 C20 C21 121.5(4)
C19 C20 C21 121.5(4)
C20 C21 C22 113.9(3)
C20 C21 H21A 108.8
C22 C21 H21A 108.8
C20 C21 H21B 108.8
C22 C21 H21B 108.8
H21A C21 H21B 107.7
N4 C22 C23 107.9(3)
N4 C22 C21 111.1(3)
C23 C22 C21 110.3(3)
N4 C22 H22 109.2
C23 C22 H22 109.2
C21 C22 H22 109.2
O3 C23 O4 125.4(4)
O3 C23 C22 124.0(4)
O4 C23 C22 110.5(3)
C25 C24 O4 108.1(5)
C25 C24 H24A 110.1
O4 C24 H24A 110.1
C25 C24 H24B 110.1
O4 C24 H24B 110.1
H24A C24 H24B 108.4
C24 C25 H25A 109.5
C24 C25 H25B 109.5
H25A C25 H25B 109.5
C24 C25 H25C 109.5
H25A C25 H25C 109.5
H25B C25 H25C 109.5
C12 N2 H2A 120.0
C12 N2 H2B 120.0
H2A N2 H2B 120.0
C13 N3 C14 128.5(3)
C13 N3 H3 115.8
C14 N3 H3 115.8
C14 N4 C22 121.3(3)
C14 N4 H4 119.3
C22 N4 H4 119.3
C23 O4 C24 117.1(3)
C12 S1 C8 91.71(18)
loop_
_geom_bond_atom_site_label_1
_geom_bond_atom_site_label_2
_geom_bond_distance
C1 C2 1.375(5)
C1 C7 1.389(5)
C1 H1 0.9300
C2 C3 1.374(6)
C2 H2 0.9300
C3 C5 1.375(6)
C3 C4 1.521(6)
C4 H4A 0.9600
C4 H4B 0.9600
C4 H4C 0.9600
C5 C6 1.384(6)
C5 H5 0.9300
C6 C7 1.375(6)
C6 H6 0.9300
C7 C9 1.491(5)
C8 C9 1.370(5)
C8 C13 1.463(5)
C8 S1 1.747(3)
C9 C11 1.420(5)
C10 N1 1.142(5)
C10 C11 1.419(6)
C11 C12 1.391(5)
C12 N2 1.342(5)
C12 S1 1.719(4)
C13 O1 1.215(5)
C13 N3 1.369(5)
C14 O2 1.224(4)
C14 N4 1.325(5)
C14 N3 1.397(4)
C15 C20 1.372(6)
C15 C16 1.374(6)
C15 H15 0.9300
C16 C17 1.343(7)
C16 H16 0.9300
C17 C18 1.377(7)
C17 H17 0.9300
C18 C19 1.371(6)
C18 H18 0.9300
C19 C20 1.373(6)
C19 H19 0.9300
C20 C21 1.505(5)
C21 C22 1.546(6)
C21 H21A 0.9700
C21 H21B 0.9700
C22 N4 1.453(4)
C22 C23 1.512(5)
C22 H22 0.9800
C23 O3 1.200(4)
C23 O4 1.316(5)
C24 C25 1.450(8)
C24 O4 1.452(5)
C24 H24A 0.9700
C24 H24B 0.9700
C25 H25A 0.9600
C25 H25B 0.9600
C25 H25C 0.9600
N2 H2A 0.8600
N2 H2B 0.8600
N3 H3 0.8600
N4 H4 0.8600
loop_
_geom_hbond_atom_site_label_D
_geom_hbond_atom_site_label_H
_geom_hbond_atom_site_label_A
_geom_hbond_distance_DH
_geom_hbond_distance_HA
_geom_hbond_distance_DA
_geom_hbond_angle_DHA
_geom_hbond_site_symmetry_A
N2 H2B O2 0.86 1.96 2.789(5) 160.2 1_565
N4 H4 O1 0.86 2.06 2.688(4) 129.3 .
loop_
_geom_torsion_atom_site_label_1
_geom_torsion_atom_site_label_2
_geom_torsion_atom_site_label_3
_geom_torsion_atom_site_label_4
_geom_torsion
C7 C1 C2 C3 -0.7(5)
C1 C2 C3 C5 -1.3(6)
C1 C2 C3 C4 176.3(4)
C2 C3 C5 C6 2.6(6)
C4 C3 C5 C6 -174.9(4)
C3 C5 C6 C7 -2.0(6)
C5 C6 C7 C1 -0.1(6)
C5 C6 C7 C9 172.7(3)
C2 C1 C7 C6 1.4(5)
C2 C1 C7 C9 -171.4(3)
C13 C8 C9 C11 171.3(4)
S1 C8 C9 C11 -2.2(4)
C13 C8 C9 C7 -9.9(7)
S1 C8 C9 C7 176.6(3)
C6 C7 C9 C8 115.7(5)
C1 C7 C9 C8 -71.6(5)
C6 C7 C9 C11 -65.6(5)
C1 C7 C9 C11 107.1(4)
C8 C9 C11 C12 1.4(5)
C7 C9 C11 C12 -177.5(4)
C8 C9 C11 C10 -179.9(4)
C7 C9 C11 C10 1.2(6)
C10 C11 C12 N2 2.4(6)
C9 C11 C12 N2 -178.9(4)
C10 C11 C12 S1 -178.8(3)
C9 C11 C12 S1 0.0(4)
C9 C8 C13 O1 -178.4(4)
S1 C8 C13 O1 -4.9(5)
C9 C8 C13 N3 -2.5(7)
S1 C8 C13 N3 170.9(3)
C20 C15 C16 C17 -0.1(8)
C15 C16 C17 C18 -0.7(8)
C16 C17 C18 C19 0.0(8)
C17 C18 C19 C20 1.4(8)
C16 C15 C20 C19 1.5(7)
C16 C15 C20 C21 -177.7(4)
C18 C19 C20 C15 -2.2(7)
C18 C19 C20 C21 177.0(4)
C15 C20 C21 C22 78.7(5)
C19 C20 C21 C22 -100.5(5)
C20 C21 C22 N4 -175.2(3)
C20 C21 C22 C23 65.2(4)
N4 C22 C23 O3 -29.7(5)
C21 C22 C23 O3 91.9(5)
N4 C22 C23 O4 153.1(3)
C21 C22 C23 O4 -85.3(4)
O1 C13 N3 C14 8.0(8)
C8 C13 N3 C14 -167.8(4)
O2 C14 N3 C13 169.3(4)
N4 C14 N3 C13 -10.7(6)
O2 C14 N4 C22 -6.3(6)
N3 C14 N4 C22 173.7(3)
C23 C22 N4 C14 -147.7(3)
C21 C22 N4 C14 91.2(4)
O3 C23 O4 C24 -2.3(6)
C22 C23 O4 C24 174.8(4)
C25 C24 O4 C23 -160.5(5)
N2 C12 S1 C8 177.9(4)
C11 C12 S1 C8 -1.1(3)
C9 C8 S1 C12 1.9(3)
C13 C8 S1 C12 -173.0(3)
