#------------------------------------------------------------------------------ #$Date: 2016-02-18 17:37:37 +0200 (Thu, 18 Feb 2016) $ #$Revision: 176729 $ #$URL: file:///home/coder/svn-repositories/cod/cif/1/50/21/1502172.cif $ #------------------------------------------------------------------------------ # # This file is available in the Crystallography Open Database (COD), # http://www.crystallography.net/ # # All data on this site have been placed in the public domain by the # contributors. # data_1502172 loop_ _publ_author_name 'Hachiya, Makoto' 'Ito, Mikinao' 'Matsuo, Tsukasa' 'Hashizume, Daisuke' 'Fueno, Hiroyuki' 'Tanaka, Kazuyoshi' 'Tamao, Kohei' _publ_section_title ; Air- and moisture-stable p-monothiobenzoquinones incorporated in an octaalkyl-s-hydrindacene skeleton. ; _journal_issue 10 _journal_name_full 'Organic letters' _journal_page_first 2666 _journal_page_last 2669 _journal_paper_doi 10.1021/ol200768b _journal_volume 13 _journal_year 2011 _chemical_formula_moiety 'C20 H28 O S' _chemical_formula_sum 'C20 H28 O S' _chemical_formula_weight 316.48 _chemical_name_systematic ; ? ; _space_group_IT_number 14 _symmetry_cell_setting monoclinic _symmetry_space_group_name_Hall '-P 2yn' _symmetry_space_group_name_H-M 'P 1 21/n 1' _atom_sites_solution_hydrogens difmap _atom_sites_solution_primary direct _atom_sites_solution_secondary difmap _audit_creation_method SHELXL-97 _cell_angle_alpha 90 _cell_angle_beta 90.4817(10) _cell_angle_gamma 90 _cell_formula_units_Z 4 _cell_length_a 6.00740(10) _cell_length_b 19.0009(4) _cell_length_c 15.4033(4) _cell_measurement_reflns_used 48285 _cell_measurement_temperature 90 _cell_measurement_theta_max 31.01 _cell_measurement_theta_min 1.07 _cell_volume 1758.16(7) _computing_cell_refinement HKL2000 _computing_data_collection CrystalClear _computing_data_reduction HKL2000 _computing_molecular_graphics SV _computing_publication_material 'SHELXL-97 (Sheldrick, 2008)' _computing_structure_refinement 'SHELXL-97 (Sheldrick, 2008)' _computing_structure_solution 'SHELXS-97 (Sheldrick, 2008)' _diffrn_ambient_temperature 90 _diffrn_detector_area_resol_mean 7.31 _diffrn_measured_fraction_theta_full 0.996 _diffrn_measured_fraction_theta_max 0.996 _diffrn_measurement_device_type 'Rigaku AFC-8 with Saturn70 CCD' _diffrn_measurement_method \w-scan _diffrn_radiation_monochromator confocal _diffrn_radiation_source 'fine-focus rotating anode' _diffrn_radiation_type MoK\a _diffrn_radiation_wavelength 0.71073 _diffrn_reflns_av_R_equivalents 0.0706 _diffrn_reflns_av_sigmaI/netI 0.0388 _diffrn_reflns_limit_h_max 8 _diffrn_reflns_limit_h_min -8 _diffrn_reflns_limit_k_max 27 _diffrn_reflns_limit_k_min -27 _diffrn_reflns_limit_l_max 22 _diffrn_reflns_limit_l_min -22 _diffrn_reflns_number 47432 _diffrn_reflns_theta_full 31.00 _diffrn_reflns_theta_max 31.00 _diffrn_reflns_theta_min 1.70 _diffrn_standards_number 0 _exptl_absorpt_coefficient_mu 0.185 _exptl_absorpt_correction_type none _exptl_crystal_colour orange _exptl_crystal_density_diffrn 1.196 _exptl_crystal_density_method 'not measured' _exptl_crystal_description block _exptl_crystal_F_000 688 _exptl_crystal_size_max 0.10 _exptl_crystal_size_mid 0.08 _exptl_crystal_size_min 0.08 _refine_diff_density_max 0.351 _refine_diff_density_min -0.422 _refine_diff_density_rms 0.050 _refine_ls_extinction_method none _refine_ls_goodness_of_fit_ref 1.059 _refine_ls_hydrogen_treatment constr _refine_ls_matrix_type full _refine_ls_number_parameters 216 _refine_ls_number_reflns 5590 _refine_ls_number_restraints 4 _refine_ls_restrained_S_all 1.119 _refine_ls_R_factor_all 0.0650 _refine_ls_R_factor_gt 0.0451 _refine_ls_shift/su_max 0.000 _refine_ls_shift/su_mean 0.000 _refine_ls_structure_factor_coef Fsqd _refine_ls_weighting_details 'calc w=1/[\s^2^(Fo^2^)+(0.0596P)^2^+0.3996P] where P=(Fo^2^+2Fc^2^)/3' _refine_ls_weighting_scheme calc _refine_ls_wR_factor_gt 0.1184 _refine_ls_wR_factor_ref 0.1276 _reflns_number_gt 4196 _reflns_number_total 5590 _reflns_threshold_expression I>2\s(I) _cod_data_source_file ol200768b_si_002.cif _cod_data_source_block Mindthioquinone _cod_original_sg_symbol_H-M 'P 21/n' _cod_database_code 1502172 loop_ _symmetry_equiv_pos_as_xyz 'x, y, z' '-x+1/2, y+1/2, -z+1/2' '-x, -y, -z' 'x-1/2, -y-1/2, z-1/2' loop_ _atom_site_label _atom_site_type_symbol _atom_site_fract_x _atom_site_fract_y _atom_site_fract_z _atom_site_U_iso_or_equiv _atom_site_adp_type _atom_site_occupancy _atom_site_symmetry_multiplicity _atom_site_calc_flag _atom_site_refinement_flags _atom_site_disorder_assembly _atom_site_disorder_group S1A S 0.27944(15) 0.13048(5) 0.46549(5) 0.0237(2) Uani 0.575(2) 1 d PD A 1 O1A O 0.5865(7) 0.1407(2) 0.11460(13) 0.0215(3) Uani 0.575(2) 1 d PD A 1 S1B S 0.5972(3) 0.14298(8) 0.09161(7) 0.0215(3) Uani 0.425(2) 1 d PD A 2 O1B O 0.2929(7) 0.1313(2) 0.44136(17) 0.0237(2) Uani 0.425(2) 1 d PD A 2 C1 C 0.3894(2) 0.12780(6) 0.37003(7) 0.0183(2) Uani 1 1 d D . . C2 C 0.5430(2) 0.18306(6) 0.34123(8) 0.0171(2) Uani 1 1 d . A . C3 C 0.6309(2) 0.24425(7) 0.39583(9) 0.0220(3) Uani 1 1 d . . . C4 C 0.8123(2) 0.27418(8) 0.33500(10) 0.0294(3) Uani 1 1 d . A . H4A H 0.8091 0.3263 0.3364 0.035 Uiso 1 1 calc R . . H4B H 0.9613 0.2584 0.3550 0.035 Uiso 1 1 calc R . . C5 C 0.7685(2) 0.24792(6) 0.24123(9) 0.0205(2) Uani 1 1 d . . . C6 C 0.6161(2) 0.18553(6) 0.25826(8) 0.0165(2) Uani 1 1 d . A . C7 C 0.5429(2) 0.13352(6) 0.19338(7) 0.0171(2) Uani 1 1 d D . . C8 C 0.41427(19) 0.07311(6) 0.22568(8) 0.0157(2) Uani 1 1 d . A . C9 C 0.3382(2) 0.01037(6) 0.17175(8) 0.0189(2) Uani 1 1 d . . . C10 C 0.2447(2) -0.03859(7) 0.24308(9) 0.0234(3) Uani 1 1 d . A . H10A H 0.3526 -0.0766 0.2559 0.028 Uiso 1 1 calc R . . H10B H 0.1040 -0.0604 0.2227 0.028 Uiso 1 1 calc R . . C11 C 0.2018(2) 0.00518(6) 0.32628(8) 0.0197(2) Uani 1 1 d . . . C12 C 0.3427(2) 0.07033(6) 0.30864(8) 0.0160(2) Uani 1 1 d . A . C13 C 0.7375(3) 0.22068(9) 0.48195(10) 0.0342(3) Uani 1 1 d . A . H13A H 0.8479 0.1839 0.4707 0.051 Uiso 1 1 calc R . . H13B H 0.6221 0.2022 0.5203 0.051 Uiso 1 1 calc R . . H13C H 0.8107 0.2610 0.5098 0.051 Uiso 1 1 calc R . . C14 C 0.4454(3) 0.29798(7) 0.41410(10) 0.0301(3) Uani 1 1 d . A . H14A H 0.5096 0.3396 0.4423 0.045 Uiso 1 1 calc R . . H14B H 0.3345 0.2767 0.4523 0.045 Uiso 1 1 calc R . . H14C H 0.3740 0.3119 0.3593 0.045 Uiso 1 1 calc R . . C15 C 0.9887(2) 0.22642(8) 0.19898(11) 0.0309(3) Uani 1 1 d . A . H15A H 1.0573 0.1883 0.2326 0.046 Uiso 1 1 calc R . . H15B H 1.0895 0.2669 0.1979 0.046 Uiso 1 1 calc R . . H15C H 0.9599 0.2103 0.1395 0.046 Uiso 1 1 calc R . . C16 C 0.6515(2) 0.30341(7) 0.18460(10) 0.0293(3) Uani 1 1 d . A . H16A H 0.5113 0.3173 0.2118 0.044 Uiso 1 1 calc R . . H16B H 0.6205 0.2836 0.1270 0.044 Uiso 1 1 calc R . . H16C H 0.7479 0.3447 0.1788 0.044 Uiso 1 1 calc R . . C17 C 0.5300(2) -0.02565(7) 0.12348(9) 0.0260(3) Uani 1 1 d . A . H17A H 0.6491 -0.0374 0.1649 0.039 Uiso 1 1 calc R . . H17B H 0.5880 0.0063 0.0792 0.039 Uiso 1 1 calc R . . H17C H 0.4753 -0.0688 0.0957 0.039 Uiso 1 1 calc R . . C18 C 0.1573(2) 0.03244(7) 0.10564(9) 0.0257(3) Uani 1 1 d . A . H18A H 0.0335 0.0548 0.1362 0.038 Uiso 1 1 calc R . . H18B H 0.1029 -0.0092 0.0746 0.038 Uiso 1 1 calc R . . H18C H 0.2204 0.0658 0.0641 0.038 Uiso 1 1 calc R . . C19 C 0.2771(3) -0.03604(8) 0.40718(10) 0.0303(3) Uani 1 1 d . A . H19A H 0.4373 -0.0453 0.4040 0.045 Uiso 1 1 calc R . . H19B H 0.1962 -0.0808 0.4098 0.045 Uiso 1 1 calc R . . H19C H 0.2459 -0.0083 0.4593 0.045 Uiso 1 1 calc R . . C20 C -0.0452(2) 0.02514(8) 0.33422(10) 0.0269(3) Uani 1 1 d . A . H20A H -0.0942 0.0495 0.2813 0.040 Uiso 1 1 calc R . . H20B H -0.0648 0.0562 0.3844 0.040 Uiso 1 1 calc R . . H20C H -0.1342 -0.0176 0.3420 0.040 Uiso 1 1 calc R . . loop_ _atom_site_aniso_label _atom_site_aniso_U_11 _atom_site_aniso_U_22 _atom_site_aniso_U_33 _atom_site_aniso_U_23 _atom_site_aniso_U_13 _atom_site_aniso_U_12 S1A 0.0280(3) 0.0274(3) 0.0158(4) -0.0016(3) 0.0082(3) -0.0015(2) O1A 0.0303(4) 0.0223(3) 0.0121(6) 0.0021(5) 0.0047(5) -0.0027(2) S1B 0.0303(4) 0.0223(3) 0.0121(6) 0.0021(5) 0.0047(5) -0.0027(2) O1B 0.0280(3) 0.0274(3) 0.0158(4) -0.0016(3) 0.0082(3) -0.0015(2) C1 0.0196(6) 0.0170(5) 0.0181(5) 0.0010(4) -0.0018(4) 0.0007(4) C2 0.0170(6) 0.0150(5) 0.0192(5) -0.0005(4) -0.0026(4) 0.0001(4) C3 0.0249(6) 0.0181(5) 0.0229(6) -0.0043(5) -0.0046(5) -0.0016(5) C4 0.0288(7) 0.0249(7) 0.0344(8) -0.0033(6) -0.0046(6) -0.0092(6) C5 0.0183(6) 0.0160(5) 0.0273(6) 0.0023(4) -0.0003(5) -0.0031(4) C6 0.0148(5) 0.0138(5) 0.0209(5) 0.0008(4) -0.0011(4) 0.0007(4) C7 0.0161(5) 0.0147(5) 0.0204(5) 0.0007(4) -0.0003(4) 0.0014(4) C8 0.0147(5) 0.0138(5) 0.0185(5) 0.0004(4) -0.0014(4) 0.0011(4) C9 0.0193(6) 0.0156(5) 0.0217(6) -0.0028(4) -0.0029(4) 0.0008(4) C10 0.0243(7) 0.0145(5) 0.0313(7) -0.0007(5) -0.0021(5) -0.0023(5) C11 0.0192(6) 0.0168(5) 0.0229(6) 0.0031(4) -0.0015(5) -0.0027(4) C12 0.0148(5) 0.0142(5) 0.0190(5) 0.0016(4) -0.0017(4) 0.0006(4) C13 0.0416(9) 0.0335(8) 0.0272(7) -0.0073(6) -0.0142(6) 0.0069(7) C14 0.0353(8) 0.0199(6) 0.0351(8) -0.0070(5) -0.0059(6) 0.0045(5) C15 0.0192(6) 0.0280(7) 0.0456(9) 0.0076(6) 0.0053(6) -0.0026(5) C16 0.0289(7) 0.0179(6) 0.0412(8) 0.0083(5) -0.0018(6) -0.0012(5) C17 0.0265(7) 0.0236(6) 0.0279(7) -0.0089(5) -0.0024(5) 0.0055(5) C18 0.0235(7) 0.0261(6) 0.0272(7) -0.0051(5) -0.0077(5) 0.0019(5) C19 0.0321(8) 0.0257(7) 0.0330(7) 0.0135(6) -0.0036(6) -0.0044(6) C20 0.0187(6) 0.0264(6) 0.0356(7) 0.0033(6) 0.0017(5) -0.0043(5) loop_ _atom_type_symbol _atom_type_description _atom_type_scat_dispersion_real _atom_type_scat_dispersion_imag _atom_type_scat_source C C 0.0033 0.0016 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' H H 0.0000 0.0000 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' O O 0.0106 0.0060 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' S S 0.1246 0.1234 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' loop_ _geom_angle_atom_site_label_1 _geom_angle_atom_site_label_2 _geom_angle_atom_site_label_3 _geom_angle O1B C1 C2 121.7(2) O1B C1 C12 121.2(2) C2 C1 C12 116.99(10) O1B C1 S1A 3.8(2) C2 C1 S1A 120.95(9) C12 C1 S1A 122.05(10) C6 C2 C1 121.26(10) C6 C2 C3 112.31(11) C1 C2 C3 126.39(11) C2 C3 C13 113.19(11) C2 C3 C14 111.00(11) C13 C3 C14 109.46(12) C2 C3 C4 100.83(10) C13 C3 C4 109.79(12) C14 C3 C4 112.38(12) C5 C4 C3 109.30(11) C5 C4 H4A 109.8 C3 C4 H4A 109.8 C5 C4 H4B 109.8 C3 C4 H4B 109.8 H4A C4 H4B 108.3 C6 C5 C15 112.82(11) C6 C5 C16 111.07(10) C15 C5 C16 109.53(12) C6 C5 C4 100.83(10) C15 C5 C4 109.94(12) C16 C5 C4 112.47(11) C2 C6 C7 121.34(11) C2 C6 C5 112.94(11) C7 C6 C5 125.68(11) O1A C7 C6 121.5(2) O1A C7 C8 121.8(2) C6 C7 C8 116.68(10) O1A C7 S1B 0.4(3) C6 C7 S1B 121.57(10) C8 C7 S1B 121.73(10) C12 C8 C7 121.43(11) C12 C8 C9 112.88(10) C7 C8 C9 125.63(10) C8 C9 C17 112.94(10) C8 C9 C18 110.77(10) C17 C9 C18 109.20(11) C8 C9 C10 101.10(10) C17 C9 C10 110.70(10) C18 C9 C10 111.99(11) C9 C10 C11 109.13(10) C9 C10 H10A 109.9 C11 C10 H10A 109.9 C9 C10 H10B 109.9 C11 C10 H10B 109.9 H10A C10 H10B 108.3 C12 C11 C19 113.47(11) C12 C11 C20 110.57(10) C19 C11 C20 109.81(11) C12 C11 C10 101.07(10) C19 C11 C10 110.30(11) C20 C11 C10 111.40(11) C8 C12 C1 121.20(10) C8 C12 C11 112.41(10) C1 C12 C11 126.28(10) C3 C13 H13A 109.5 C3 C13 H13B 109.5 H13A C13 H13B 109.5 C3 C13 H13C 109.5 H13A C13 H13C 109.5 H13B C13 H13C 109.5 C3 C14 H14A 109.5 C3 C14 H14B 109.5 H14A C14 H14B 109.5 C3 C14 H14C 109.5 H14A C14 H14C 109.5 H14B C14 H14C 109.5 C5 C15 H15A 109.5 C5 C15 H15B 109.5 H15A C15 H15B 109.5 C5 C15 H15C 109.5 H15A C15 H15C 109.5 H15B C15 H15C 109.5 C5 C16 H16A 109.5 C5 C16 H16B 109.5 H16A C16 H16B 109.5 C5 C16 H16C 109.5 H16A C16 H16C 109.5 H16B C16 H16C 109.5 C9 C17 H17A 109.5 C9 C17 H17B 109.5 H17A C17 H17B 109.5 C9 C17 H17C 109.5 H17A C17 H17C 109.5 H17B C17 H17C 109.5 C9 C18 H18A 109.5 C9 C18 H18B 109.5 H18A C18 H18B 109.5 C9 C18 H18C 109.5 H18A C18 H18C 109.5 H18B C18 H18C 109.5 C11 C19 H19A 109.5 C11 C19 H19B 109.5 H19A C19 H19B 109.5 C11 C19 H19C 109.5 H19A C19 H19C 109.5 H19B C19 H19C 109.5 C11 C20 H20A 109.5 C11 C20 H20B 109.5 H20A C20 H20B 109.5 C11 C20 H20C 109.5 H20A C20 H20C 109.5 H20B C20 H20C 109.5 loop_ _geom_bond_atom_site_label_1 _geom_bond_atom_site_label_2 _geom_bond_distance S1A C1 1.6180(11) O1A C7 1.2509(17) S1B C7 1.6140(13) O1B C1 1.2483(18) C1 C2 1.4686(17) C1 C12 1.4700(16) C2 C6 1.3556(17) C2 C3 1.5268(17) C3 C13 1.5351(19) C3 C14 1.5389(19) C3 C4 1.551(2) C4 C5 1.549(2) C4 H4A 0.9900 C4 H4B 0.9900 C5 C6 1.5221(17) C5 C15 1.5344(19) C5 C16 1.5351(18) C6 C7 1.4702(16) C7 C8 1.4727(16) C8 C12 1.3528(16) C8 C9 1.5211(16) C9 C17 1.5376(18) C9 C18 1.5412(18) C9 C10 1.5486(18) C10 C11 1.5511(18) C10 H10A 0.9900 C10 H10B 0.9900 C11 C12 1.5249(17) C11 C19 1.5368(18) C11 C20 1.5378(18) C13 H13A 0.9800 C13 H13B 0.9800 C13 H13C 0.9800 C14 H14A 0.9800 C14 H14B 0.9800 C14 H14C 0.9800 C15 H15A 0.9800 C15 H15B 0.9800 C15 H15C 0.9800 C16 H16A 0.9800 C16 H16B 0.9800 C16 H16C 0.9800 C17 H17A 0.9800 C17 H17B 0.9800 C17 H17C 0.9800 C18 H18A 0.9800 C18 H18B 0.9800 C18 H18C 0.9800 C19 H19A 0.9800 C19 H19B 0.9800 C19 H19C 0.9800 C20 H20A 0.9800 C20 H20B 0.9800 C20 H20C 0.9800 loop_ _geom_torsion_atom_site_label_1 _geom_torsion_atom_site_label_2 _geom_torsion_atom_site_label_3 _geom_torsion_atom_site_label_4 _geom_torsion O1B C1 C2 C6 -168.1(3) C12 C1 C2 C6 7.94(17) S1A C1 C2 C6 -172.50(10) O1B C1 C2 C3 9.3(3) C12 C1 C2 C3 -174.65(11) S1A C1 C2 C3 4.90(18) C6 C2 C3 C13 -129.33(13) C1 C2 C3 C13 53.07(17) C6 C2 C3 C14 107.12(13) C1 C2 C3 C14 -70.48(16) C6 C2 C3 C4 -12.14(14) C1 C2 C3 C4 170.26(12) C2 C3 C4 C5 18.97(14) C13 C3 C4 C5 138.64(12) C14 C3 C4 C5 -99.28(13) C3 C4 C5 C6 -18.62(14) C3 C4 C5 C15 -137.92(12) C3 C4 C5 C16 99.76(13) C1 C2 C6 C7 0.70(18) C3 C2 C6 C7 -177.04(11) C1 C2 C6 C5 178.40(11) C3 C2 C6 C5 0.66(14) C15 C5 C6 C2 128.36(12) C16 C5 C6 C2 -108.22(13) C4 C5 C6 C2 11.16(14) C15 C5 C6 C7 -54.06(16) C16 C5 C6 C7 69.36(16) C4 C5 C6 C7 -171.26(12) C2 C6 C7 O1A 170.7(2) C5 C6 C7 O1A -6.7(3) C2 C6 C7 C8 -8.79(17) C5 C6 C7 C8 173.81(11) C2 C6 C7 S1B 170.14(12) C5 C6 C7 S1B -7.26(18) O1A C7 C8 C12 -171.2(2) C6 C7 C8 C12 8.28(17) S1B C7 C8 C12 -170.65(12) O1A C7 C8 C9 5.8(3) C6 C7 C8 C9 -174.80(11) S1B C7 C8 C9 6.27(18) C12 C8 C9 C17 -128.96(12) C7 C8 C9 C17 53.89(16) C12 C8 C9 C18 108.19(12) C7 C8 C9 C18 -68.96(15) C12 C8 C9 C10 -10.66(13) C7 C8 C9 C10 172.20(11) C8 C9 C10 C11 17.68(13) C17 C9 C10 C11 137.60(11) C18 C9 C10 C11 -100.28(12) C9 C10 C11 C12 -17.98(13) C9 C10 C11 C19 -138.31(11) C9 C10 C11 C20 99.48(12) C7 C8 C12 C1 0.31(17) C9 C8 C12 C1 -176.97(11) C7 C8 C12 C11 176.69(11) C9 C8 C12 C11 -0.59(14) O1B C1 C12 C8 167.7(3) C2 C1 C12 C8 -8.45(17) S1A C1 C12 C8 171.99(10) O1B C1 C12 C11 -8.2(3) C2 C1 C12 C11 175.69(11) S1A C1 C12 C11 -3.86(18) C19 C11 C12 C8 129.57(12) C20 C11 C12 C8 -106.55(12) C10 C11 C12 C8 11.52(13) C19 C11 C12 C1 -54.26(17) C20 C11 C12 C1 69.62(15) C10 C11 C12 C1 -172.31(11)