#------------------------------------------------------------------------------ #$Date: 2014-08-22 04:33:33 +0300 (Fri, 22 Aug 2014) $ #$Revision: 122339 $ #$URL: file:///home/coder/svn-repositories/cod/cif/1/51/74/1517414.cif $ #------------------------------------------------------------------------------ # # This file is available in the Crystallography Open Database (COD), # http://www.crystallography.net/ # # All data on this site have been placed in the public domain by the # contributors. # data_1517414 loop_ _publ_author_name 'Wu, Qiong' 'He, Jiangtu' 'Mei, Wenjie' 'Zhang, Zhao' 'Wu, Xiaohui' 'Sun, Fenyong' _publ_section_title ; Arene ruthenium(ii) complex, a potent inhibitor against proliferation, migration and invasion of breast cancer cells, reduces stress fibers, focal adhesions and invadopodia ; _journal_name_full Metallomics _journal_paper_doi 10.1039/C4MT00158C _journal_year 2014 _chemical_formula_sum 'C27 H18 Cl N5 O2.25 Ru' _chemical_formula_weight 584.98 _chemical_name_systematic ; ? ; _space_group_IT_number 114 _symmetry_space_group_name_Hall 'P -4 2n' _symmetry_space_group_name_H-M 'P -4 21 c' _atom_sites_solution_hydrogens geom _atom_sites_solution_primary direct _atom_sites_solution_secondary difmap _audit_creation_method SHELXL-97 _cell_angle_alpha 90.00 _cell_angle_beta 90.00 _cell_angle_gamma 90.00 _cell_formula_units_Z 8 _cell_length_a 27.1414(5) _cell_length_b 27.1414(5) _cell_length_c 7.5825(4) _cell_measurement_temperature 293(2) _cell_volume 5585.7(3) _computing_structure_refinement 'SHELXL-97 (Sheldrick, 1997)' _computing_structure_solution 'SHELXS-97 (Sheldrick, 1990)' _diffrn_ambient_temperature 293(2) _diffrn_measured_fraction_theta_full 0.997 _diffrn_measured_fraction_theta_max 0.997 _diffrn_radiation_monochromator graphite _diffrn_radiation_source 'fine-focus sealed tube' _diffrn_radiation_type MoK\a _diffrn_radiation_wavelength 0.71073 _diffrn_reflns_av_R_equivalents 0.0650 _diffrn_reflns_av_sigmaI/netI 0.0935 _diffrn_reflns_limit_h_max 31 _diffrn_reflns_limit_h_min -32 _diffrn_reflns_limit_k_max 19 _diffrn_reflns_limit_k_min -32 _diffrn_reflns_limit_l_max 9 _diffrn_reflns_limit_l_min -9 _diffrn_reflns_number 14890 _diffrn_reflns_theta_full 25.00 _diffrn_reflns_theta_max 25.00 _diffrn_reflns_theta_min 3.00 _exptl_absorpt_coefficient_mu 0.689 _exptl_crystal_density_diffrn 1.391 _exptl_crystal_density_method 'not measured' _exptl_crystal_F_000 2352 _refine_diff_density_max 1.482 _refine_diff_density_min -0.497 _refine_diff_density_rms 0.131 _refine_ls_abs_structure_details 'Flack H D (1983), Acta Cryst. A39, 876-881' _refine_ls_abs_structure_Flack -0.13(9) _refine_ls_extinction_method none _refine_ls_goodness_of_fit_ref 1.123 _refine_ls_hydrogen_treatment mixed _refine_ls_matrix_type full _refine_ls_number_parameters 327 _refine_ls_number_reflns 4856 _refine_ls_number_restraints 9 _refine_ls_restrained_S_all 1.122 _refine_ls_R_factor_all 0.0856 _refine_ls_R_factor_gt 0.0650 _refine_ls_shift/su_max 0.001 _refine_ls_shift/su_mean 0.000 _refine_ls_structure_factor_coef Fsqd _refine_ls_weighting_details 'calc w=1/[\s^2^(Fo^2^)+(0.0999P)^2^+8.6727P] where P=(Fo^2^+2Fc^2^)/3' _refine_ls_weighting_scheme calc _refine_ls_wR_factor_gt 0.1963 _refine_ls_wR_factor_ref 0.2121 _reflns_number_gt 3856 _reflns_number_total 4856 _reflns_threshold_expression >2sigma(I) _[local]_cod_data_source_file c4mt00158c3.cif _[local]_cod_data_source_block 1 _cod_database_code 1517414 loop_ _symmetry_equiv_pos_as_xyz 'x, y, z' '-x, -y, z' 'y, -x, -z' '-y, x, -z' '-x+1/2, y+1/2, -z+1/2' 'x+1/2, -y+1/2, -z+1/2' '-y+1/2, -x+1/2, z+1/2' 'y+1/2, x+1/2, z+1/2' loop_ _atom_site_label _atom_site_type_symbol _atom_site_fract_x _atom_site_fract_y _atom_site_fract_z _atom_site_U_iso_or_equiv _atom_site_adp_type _atom_site_occupancy _atom_site_symmetry_multiplicity _atom_site_calc_flag _atom_site_refinement_flags Ru1 Ru 0.54642(3) 0.25509(3) 0.22262(12) 0.0340(3) Uani 1 1 d . Cl1 Cl 0.53095(11) 0.22282(12) -0.0660(4) 0.0510(8) Uani 1 1 d . N1 N 0.6059(3) 0.2061(3) 0.2242(13) 0.0341(18) Uani 1 1 d . N5 N 0.9220(3) 0.2453(4) -0.2773(14) 0.053(2) Uani 1 1 d . H16A H 0.9430 0.2610 -0.3409 0.064 Uiso 1 1 calc R C3 C 0.6899(4) 0.1476(3) 0.2106(15) 0.038(2) Uani 1 1 d . H3A H 0.7176 0.1275 0.2053 0.045 Uiso 1 1 calc R C1 C 0.6051(3) 0.1592(3) 0.2845(15) 0.036(2) Uani 1 1 d . H1A H 0.5757 0.1466 0.3290 0.044 Uiso 1 1 calc R N4 N 0.7776(3) 0.2757(3) -0.0670(11) 0.037(2) Uani 1 1 d . H4A H 0.7872 0.3026 -0.1162 0.044 Uiso 1 1 calc R C11 C 0.7309(4) 0.2670(4) 0.0013(14) 0.035(2) Uani 1 1 d . C2 C 0.6457(3) 0.1295(4) 0.2823(16) 0.042(2) Uani 1 1 d . H2A H 0.6442 0.0978 0.3279 0.050 Uiso 1 1 calc R N2 N 0.6016(3) 0.2959(3) 0.1002(11) 0.035(2) Uani 1 1 d . C4 C 0.6920(3) 0.1965(3) 0.1464(12) 0.030(2) Uani 1 1 d . C9 C 0.6812(4) 0.3437(4) -0.0627(16) 0.042(3) Uani 1 1 d . H9A H 0.7074 0.3593 -0.1181 0.050 Uiso 1 1 calc R N3 N 0.7799(3) 0.1990(3) 0.0367(12) 0.037(2) Uani 1 1 d . C12 C 0.7340(3) 0.2177(4) 0.0684(14) 0.035(2) Uani 1 1 d . C8 C 0.6378(5) 0.3660(4) -0.0496(16) 0.050(3) Uani 1 1 d . H8A H 0.6340 0.3975 -0.0962 0.060 Uiso 1 1 calc R C17 C 0.9271(3) 0.1976(4) -0.2166(16) 0.042(2) Uani 1 1 d . C6 C 0.6467(3) 0.2732(4) 0.0876(13) 0.032(2) Uani 1 1 d . C18 C 0.8855(3) 0.1874(4) -0.1091(15) 0.039(3) Uani 1 1 d . C5 C 0.6492(3) 0.2239(3) 0.1553(12) 0.026(2) Uani 1 1 d . C16 C 0.8769(4) 0.2636(4) -0.2177(16) 0.050(3) Uani 1 1 d . H16B H 0.8643 0.2945 -0.2447 0.060 Uiso 1 1 calc R C7 C 0.5969(4) 0.3426(4) 0.0350(15) 0.043(3) Uani 1 1 d . H7A H 0.5671 0.3592 0.0456 0.052 Uiso 1 1 calc R C10 C 0.6872(4) 0.2955(4) 0.0087(15) 0.038(3) Uani 1 1 d . C13 C 0.8051(4) 0.2354(4) -0.0437(14) 0.038(2) Uani 1 1 d . C14 C 0.8544(3) 0.2302(4) -0.1162(14) 0.033(2) Uani 1 1 d . C22 C 0.9639(4) 0.1643(4) -0.2490(18) 0.054(3) Uani 1 1 d . H22A H 0.9900 0.1721 -0.3233 0.065 Uiso 1 1 calc R C19 C 0.8838(4) 0.1421(4) -0.0278(17) 0.047(3) Uani 1 1 d . H19A H 0.8573 0.1343 0.0447 0.056 Uiso 1 1 calc R C21 C 0.9613(4) 0.1193(5) -0.1695(18) 0.059(4) Uani 1 1 d . H21A H 0.9855 0.0959 -0.1908 0.071 Uiso 1 1 calc R C20 C 0.9210(5) 0.1080(5) -0.052(2) 0.065(4) Uani 1 1 d . H20A H 0.9200 0.0779 0.0064 0.078 Uiso 1 1 calc R C28 C 0.4685(4) 0.2624(4) 0.2710(18) 0.064(4) Uani 1 1 d D H28A H 0.4422 0.2566 0.1950 0.077 Uiso 1 1 calc R C23 C 0.4876(4) 0.3095(4) 0.2755(16) 0.059(3) Uani 1 1 d D H23A H 0.4751 0.3350 0.2071 0.071 Uiso 1 1 calc R C25 C 0.5461(5) 0.2792(4) 0.4965(13) 0.052(3) Uani 1 1 d D H25A H 0.5723 0.2852 0.5723 0.062 Uiso 1 1 calc R C27 C 0.4855(4) 0.2229(5) 0.3720(17) 0.063(4) Uani 1 1 d D H27A H 0.4716 0.1917 0.3638 0.075 Uiso 1 1 calc R C24 C 0.5271(4) 0.3158(4) 0.3906(14) 0.063(4) Uani 1 1 d D H24A H 0.5417 0.3468 0.3962 0.075 Uiso 1 1 calc R C26 C 0.5244(4) 0.2330(5) 0.4856(15) 0.066(4) Uani 1 1 d D H26A H 0.5364 0.2079 0.5569 0.079 Uiso 1 1 calc R O1 O 0.0000 0.0000 0.0000 0.052(5) Uani 1 4 d S O2 O 0.8172(4) 0.3758(3) 0.8283(19) 0.111(5) Uani 1 1 d . O3 O 0.9914(4) 0.0672(4) 0.3694(15) 0.095(3) Uani 1 1 d . loop_ _atom_site_aniso_label _atom_site_aniso_U_11 _atom_site_aniso_U_22 _atom_site_aniso_U_33 _atom_site_aniso_U_23 _atom_site_aniso_U_13 _atom_site_aniso_U_12 Ru1 0.0271(4) 0.0405(5) 0.0346(4) -0.0005(4) 0.0003(4) 0.0039(3) Cl1 0.0438(16) 0.0683(19) 0.0409(15) -0.0122(14) -0.0095(13) 0.0121(14) N1 0.027(4) 0.042(5) 0.033(4) 0.003(4) -0.004(4) 0.001(3) N5 0.032(4) 0.073(6) 0.054(5) 0.003(6) 0.011(5) -0.003(5) C3 0.040(5) 0.038(5) 0.035(5) -0.009(5) -0.004(5) 0.014(5) C1 0.035(5) 0.035(5) 0.040(5) 0.007(5) -0.005(5) -0.009(4) N4 0.026(4) 0.035(5) 0.049(6) 0.003(4) 0.002(4) -0.003(4) C11 0.034(6) 0.033(6) 0.038(5) -0.003(4) 0.000(4) 0.005(5) C2 0.037(5) 0.034(5) 0.056(6) 0.004(6) 0.004(6) 0.001(5) N2 0.041(5) 0.031(5) 0.033(5) 0.003(4) -0.001(4) 0.000(4) C4 0.035(5) 0.025(5) 0.030(5) -0.001(4) -0.005(4) -0.001(4) C9 0.035(6) 0.037(6) 0.054(7) -0.003(5) 0.011(5) -0.002(5) N3 0.027(4) 0.040(5) 0.044(5) 0.000(4) 0.002(4) 0.007(4) C12 0.018(5) 0.044(6) 0.043(6) -0.004(5) 0.003(4) 0.004(4) C8 0.059(8) 0.037(6) 0.054(8) 0.004(6) 0.004(6) -0.007(6) C17 0.027(5) 0.056(7) 0.042(6) -0.009(6) -0.005(5) 0.001(5) C6 0.029(5) 0.036(5) 0.031(5) -0.008(4) -0.003(4) 0.011(4) C18 0.023(5) 0.051(6) 0.042(6) -0.003(5) -0.003(5) -0.009(5) C5 0.022(5) 0.028(5) 0.026(5) -0.001(4) -0.004(4) 0.001(4) C16 0.049(6) 0.049(6) 0.052(6) -0.007(6) -0.016(6) 0.008(5) C7 0.033(6) 0.048(7) 0.049(7) -0.001(6) -0.014(5) 0.008(5) C10 0.041(6) 0.035(6) 0.038(6) 0.000(5) -0.008(5) -0.002(5) C13 0.038(6) 0.038(6) 0.038(6) -0.010(5) -0.007(5) 0.012(5) C14 0.020(5) 0.036(5) 0.043(6) -0.005(5) 0.002(4) -0.007(4) C22 0.033(6) 0.066(8) 0.064(9) -0.015(7) 0.002(6) -0.007(5) C19 0.034(6) 0.048(7) 0.059(8) -0.008(6) 0.001(5) -0.009(5) C21 0.026(6) 0.077(9) 0.075(9) -0.031(8) -0.001(6) 0.004(6) C20 0.054(8) 0.044(7) 0.097(11) -0.011(7) -0.041(8) 0.005(6) C28 0.027(5) 0.104(10) 0.062(8) -0.034(10) 0.011(6) 0.002(6) C23 0.044(6) 0.069(8) 0.063(8) -0.004(8) 0.020(7) 0.025(6) C25 0.069(8) 0.057(7) 0.030(6) -0.012(5) -0.009(6) -0.005(7) C27 0.056(8) 0.060(8) 0.072(10) 0.009(8) 0.024(8) -0.005(7) C24 0.081(10) 0.053(8) 0.053(8) -0.028(7) 0.014(7) -0.012(7) C26 0.057(8) 0.104(12) 0.036(7) 0.007(7) 0.012(6) 0.029(9) O1 0.016(4) 0.016(4) 0.125(16) 0.000 0.000 0.000 O2 0.094(7) 0.037(5) 0.203(14) 0.057(7) 0.101(9) 0.044(5) O3 0.103(8) 0.091(8) 0.092(8) 0.018(7) 0.017(7) 0.005(7) loop_ _atom_type_symbol _atom_type_description _atom_type_scat_dispersion_real _atom_type_scat_dispersion_imag _atom_type_scat_source C C 0.0033 0.0016 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' H H 0.0000 0.0000 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' N N 0.0061 0.0033 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' Cl Cl 0.1484 0.1585 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' O O 0.0106 0.0060 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' Ru Ru -1.2594 0.8363 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' loop_ _geom_angle_atom_site_label_1 _geom_angle_atom_site_label_2 _geom_angle_atom_site_label_3 _geom_angle N2 Ru1 N1 77.6(3) N2 Ru1 Cl1 85.0(2) N1 Ru1 Cl1 84.7(3) C1 N1 C5 118.2(8) C1 N1 Ru1 126.1(6) C5 N1 Ru1 115.8(6) C17 N5 C16 108.2(9) C2 C3 C4 119.7(9) N1 C1 C2 122.5(9) C13 N4 C11 108.7(9) N4 C11 C10 133.2(10) N4 C11 C12 103.9(8) C10 C11 C12 122.9(9) C1 C2 C3 119.3(9) C7 N2 C6 118.3(9) C7 N2 Ru1 125.9(7) C6 N2 Ru1 115.8(6) C5 C4 C12 118.7(8) C5 C4 C3 117.1(9) C12 C4 C3 124.1(9) C8 C9 C10 119.5(10) C13 N3 C12 105.8(8) N3 C12 C4 131.4(9) N3 C12 C11 109.6(9) C4 C12 C11 119.0(8) C9 C8 C7 121.2(11) C22 C17 N5 129.2(11) C22 C17 C18 123.7(11) N5 C17 C18 107.1(9) N2 C6 C10 122.7(9) N2 C6 C5 115.8(9) C10 C6 C5 121.5(9) C19 C18 C17 117.1(10) C19 C18 C14 136.1(10) C17 C18 C14 106.8(9) N1 C5 C4 123.2(8) N1 C5 C6 115.1(8) C4 C5 C6 121.7(8) C14 C16 N5 110.2(9) N2 C7 C8 120.0(10) C6 C10 C11 116.2(10) C6 C10 C9 118.2(10) C11 C10 C9 125.6(10) N4 C13 N3 112.0(9) N4 C13 C14 122.9(10) N3 C13 C14 124.6(9) C16 C14 C18 107.6(9) C16 C14 C13 124.9(10) C18 C14 C13 127.2(9) C21 C22 C17 118.3(11) C18 C19 C20 121.0(12) C22 C21 C20 120.2(11) C19 C20 C21 119.6(12) C23 C28 C27 125.0(11) C28 C23 C24 114.8(11) C24 C25 C26 117.3(11) C26 C27 C28 116.0(11) C25 C24 C23 124.3(11) C25 C26 C27 122.5(11) loop_ _geom_bond_atom_site_label_1 _geom_bond_atom_site_label_2 _geom_bond_distance Ru1 N2 2.081(8) Ru1 N1 2.090(7) Ru1 Cl1 2.395(3) N1 C1 1.355(11) N1 C5 1.375(11) N5 C17 1.382(14) N5 C16 1.395(14) C3 C2 1.404(14) C3 C4 1.414(13) C1 C2 1.365(13) N4 C13 1.338(14) N4 C11 1.389(13) C11 C10 1.418(14) C11 C12 1.433(14) N2 C7 1.369(13) N2 C6 1.372(12) C4 C5 1.382(13) C4 C12 1.407(13) C9 C8 1.328(15) C9 C10 1.424(15) N3 C13 1.347(13) N3 C12 1.367(12) C8 C7 1.431(16) C17 C22 1.369(15) C17 C18 1.419(14) C6 C10 1.389(15) C6 C5 1.434(13) C18 C19 1.377(16) C18 C14 1.435(14) C16 C14 1.337(15) C13 C14 1.453(14) C22 C21 1.362(17) C19 C20 1.380(17) C21 C20 1.442(19) C28 C23 1.379(9) C28 C27 1.396(9) C23 C24 1.393(9) C25 C24 1.377(9) C25 C26 1.386(9) C27 C26 1.391(9)