#------------------------------------------------------------------------------ #$Date: 2017-10-13 03:48:21 +0300 (Fri, 13 Oct 2017) $ #$Revision: 201957 $ #$URL: file:///home/coder/svn-repositories/cod/cif/2/01/06/2010613.cif $ #------------------------------------------------------------------------------ # # This file is available in the Crystallography Open Database (COD), # http://www.crystallography.net/. The original data for this entry # were provided by IUCr Journals, http://journals.iucr.org/. # # The file may be used within the scientific community so long as # proper attribution is given to the journal article from which the # data were obtained. # data_2010613 loop_ _publ_author_name 'Parvez, Masood' Atta-ur-Rahman 'Choudhary, M. Iqbal' 'Parveen, Shehnaz' 'Ayatollahi, Syed Abdul Majid' _publ_section_title ; Cyclomicrobuxine monohydrate ; _journal_issue 2 _journal_name_full 'Acta Crystallographica Section C' _journal_page_first 233 _journal_page_last 234 _journal_paper_doi 10.1107/S0108270199014420 _journal_volume 56 _journal_year 2000 _chemical_formula_iupac 'C25 H39 N O2 , H2O' _chemical_formula_moiety 'C25 H39 N O2 , H2O' _chemical_formula_sum 'C25 H41 N O3' _chemical_formula_weight 403.59 _chemical_name_common ' Cyclomicrobuxine ' _chemical_name_systematic ; 3\b-(Dimethylamino)-16\a-hydroxy-14-methyl-4-methylene-9,19-cyclo-5\a- pregnan-20-one monohydrate ; _space_group_IT_number 4 _symmetry_cell_setting monoclinic _symmetry_space_group_name_Hall 'P 2yb' _symmetry_space_group_name_H-M 'P 1 21 1' _cell_angle_alpha 90.00 _cell_angle_beta 108.496(8) _cell_angle_gamma 90.00 _cell_formula_units_Z 2 _cell_length_a 6.1333(8) _cell_length_b 24.365(3) _cell_length_c 8.0681(6) _cell_measurement_reflns_used 25 _cell_measurement_temperature 293.0(10) _cell_measurement_theta_max 25.0 _cell_measurement_theta_min 10.0 _cell_volume 1143.4(2) _computing_cell_refinement 'MSC/AFC Diffractometer Control Software' _computing_data_collection ;MSC/AFC Diffractometer Control Software (Molecular Structure Corporation, 1988) ; _computing_data_reduction 'TEXSAN (Molecular Structure Corporation, 1994)' _computing_molecular_graphics 'ORTEPII (Johnson, 1976)' _computing_publication_material 'SHELXL97 (Sheldrick, 1997)' _computing_structure_refinement 'SHELXL97 (Sheldrick, 1997)' _computing_structure_solution 'SAPI91 (Fan, 1991)' _diffrn_ambient_temperature 293.0(10) _diffrn_measurement_device_type 'Rigaku AFC-6S' _diffrn_measurement_method '\w--2\q ' _diffrn_radiation_monochromator graphite _diffrn_radiation_source 'fine-focus sealed tube' _diffrn_radiation_type MoK\a _diffrn_radiation_wavelength .71069 _diffrn_reflns_av_R_equivalents .0379 _diffrn_reflns_av_sigmaI/netI .0764 _diffrn_reflns_limit_h_max 7 _diffrn_reflns_limit_h_min 0 _diffrn_reflns_limit_k_max 31 _diffrn_reflns_limit_k_min -31 _diffrn_reflns_limit_l_max 9 _diffrn_reflns_limit_l_min -10 _diffrn_reflns_number 5848 _diffrn_reflns_theta_max 27.55 _diffrn_reflns_theta_min 2.66 _diffrn_standards_decay_% .12 _diffrn_standards_interval_count 200 _diffrn_standards_number 3 _exptl_absorpt_coefficient_mu .075 _exptl_absorpt_correction_T_max .9814 _exptl_absorpt_correction_T_min .9720 _exptl_absorpt_correction_type psi-scan _exptl_absorpt_process_details ; (North, Phillips & Mathews, 1968) ; _exptl_crystal_colour ' colourless ' _exptl_crystal_density_diffrn 1.172 _exptl_crystal_density_meas ? _exptl_crystal_density_method 'not measured' _exptl_crystal_description ' prismatic ' _exptl_crystal_F_000 444 _exptl_crystal_size_max .38 _exptl_crystal_size_mid .29 _exptl_crystal_size_min .25 _refine_diff_density_max .223 _refine_diff_density_min -.240 _refine_ls_abs_structure_details 'Flack (1983)' _refine_ls_abs_structure_Flack -1(3) _refine_ls_extinction_coef .009(4) _refine_ls_extinction_method 'SHELXL97 (Sheldrick, 1997)' _refine_ls_goodness_of_fit_ref 1.071 _refine_ls_hydrogen_treatment 'H atoms not refined' _refine_ls_matrix_type full _refine_ls_number_parameters 270 _refine_ls_number_reflns 5257 _refine_ls_number_restraints 1 _refine_ls_restrained_S_all 1.071 _refine_ls_R_factor_all .1373 _refine_ls_R_factor_gt .0585 _refine_ls_shift/su_max .002 _refine_ls_shift/su_mean .000 _refine_ls_structure_factor_coef Fsqd _refine_ls_weighting_details 'w=1/[\s^2^(Fo^2^)+(0.1023P)^2^+1.323P] where P=(Fo^2^+2Fc^2^)/3' _refine_ls_weighting_scheme calc _refine_ls_wR_factor_ref .2554 _reflns_number_gt 2901 _reflns_number_total 5257 _reflns_threshold_expression I>2\s(I) _cod_data_source_file da1099.cif _cod_data_source_block I _cod_depositor_comments ; The following automatic conversions were performed: '_exptl_crystal_density_meas' value 'not measured ' was changed to '?' - the value is perceived as not measured. Automatic conversion script Id: cif_fix_values 3008 2015-01-20 13:52:24Z robertas ; _cod_original_sg_symbol_H-M 'P 21' _cod_database_code 2010613 _cod_database_fobs_code 2010613 loop_ _symmetry_equiv_pos_as_xyz 'x, y, z' '-x, y+1/2, -z' loop_ _atom_site_label _atom_site_fract_x _atom_site_fract_y _atom_site_fract_z _atom_site_U_iso_or_equiv _atom_site_adp_type _atom_site_calc_flag _atom_site_refinement_flags _atom_site_occupancy _atom_site_disorder_assembly _atom_site_disorder_group _atom_site_type_symbol O1 .9274(8) -.08845(19) .9604(6) .0750(15) Uani d . 1 . . O H1 1.0012 -.0607 .9569 .113 Uiso calc R 1 . . H O2 .5150(9) .02603(19) .7301(7) .0743(13) Uani d . 1 . . O N1 -.0547(9) -.39785(19) -.0391(6) .0494(12) Uani d . 1 . . N C1 .3067(10) -.2637(2) .0788(7) .0483(13) Uani d . 1 . . C H1A .3051 -.2303 .0131 .058 Uiso calc R 1 . . H H1B .4592 -.2797 .1084 .058 Uiso calc R 1 . . H C2 .1301(12) -.3039(2) -.0320(7) .0553(15) Uani d . 1 . . C H2A .1726 -.3137 -.1342 .066 Uiso calc R 1 . . H H2B -.0186 -.2860 -.0720 .066 Uiso calc R 1 . . H C3 .1091(10) -.3568(2) .0671(7) .0428(12) Uani d . 1 . . C H3 .2610 -.3742 .1016 .051 Uiso calc R 1 . . H C4 .0631(9) -.3416(2) .2352(6) .0386(11) Uani d . 1 . . C C5 .2451(8) -.30313(19) .3467(6) .0344(10) Uani d . 1 . . C H5 .3923 -.3214 .3609 .041 Uiso calc R 1 . . H C6 .2396(10) -.2928(2) .5323(6) .0419(12) Uani d . 1 . . C H6A .0919 -.2775 .5281 .050 Uiso calc R 1 . . H H6B .2608 -.3271 .5965 .050 Uiso calc R 1 . . H C7 .4298(9) -.2530(2) .6234(6) .0423(12) Uani d . 1 . . C H7A .5744 -.2662 .6134 .051 Uiso calc R 1 . . H H7B .4445 -.2512 .7465 .051 Uiso calc R 1 . . H C8 .3798(8) -.19572(19) .5433(6) .0328(10) Uani d . 1 . . C H8 .2389 -.1832 .5642 .039 Uiso calc R 1 . . H C9 .3270(8) -.1963(2) .3415(6) .0349(10) Uani d . 1 . . C C10 .2510(8) -.2504(2) .2454(6) .0362(10) Uani d . 1 . . C C11 .4589(9) -.1557(2) .2610(6) .0434(12) Uani d . 1 . . C H11A .5897 -.1752 .2466 .052 Uiso calc R 1 . . H H11B .3589 -.1464 .1449 .052 Uiso calc R 1 . . H C12 .5485(9) -.1018(2) .3571(6) .0438(12) Uani d . 1 . . C H12A .7119 -.0988 .3744 .053 Uiso calc R 1 . . H H12B .4726 -.0713 .2844 .053 Uiso calc R 1 . . H C13 .5086(8) -.09750(18) .5351(6) .0334(10) Uani d . 1 . . C C14 .5673(8) -.15371(18) .6329(6) .0326(10) Uani d . 1 . . C C15 .5748(10) -.1375(2) .8192(6) .0426(12) Uani d . 1 . . C H15A .4206 -.1350 .8272 .051 Uiso calc R 1 . . H H15B .6612 -.1643 .9036 .051 Uiso calc R 1 . . H C16 .6941(9) -.0812(2) .8527(7) .0470(12) Uani d . 1 . . C H16 .6139 -.0568 .9107 .056 Uiso calc R 1 . . H C17 .6778(9) -.0581(2) .6702(7) .0412(12) Uani d . 1 . . C H17 .8296 -.0624 .6558 .049 Uiso calc R 1 . . H C18 .2601(9) -.0792(2) .5063(7) .0491(13) Uani d . 1 . . C H18A .2367 -.0434 .4542 .074 Uiso calc R 1 . . H H18B .2316 -.0780 .6166 .074 Uiso calc R 1 . . H H18C .1564 -.1048 .4303 .074 Uiso calc R 1 . . H C19 .0762(8) -.2070(2) .2362(6) .0398(11) Uani d . 1 . . C H19A -.0312 -.2131 .3004 .048 Uiso calc R 1 . . H H19B .0130 -.1876 .1265 .048 Uiso calc R 1 . . H C20 .6165(10) .0024(2) .6466(7) .0489(13) Uani d . 1 . . C C21 .6887(14) .0311(3) .5068(9) .075(2) Uani d . 1 . . C H21A .6477 .0692 .5034 .113 Uiso calc R 1 . . H H21B .6123 .0145 .3955 .113 Uiso calc R 1 . . H H21C .8520 .0278 .5326 .113 Uiso calc R 1 . . H C22 -.1114(10) -.3597(2) .2815(8) .0513(13) Uani d . 1 . . C H22A -.1276 -.3490 .3876 .062 Uiso calc R 1 . . H H22B -.2185 -.3833 .2081 .062 Uiso calc R 1 . . H C23 .8070(9) -.1740(2) .6385(7) .0450(12) Uani d . 1 . . C H23A .8514 -.2043 .7181 .067 Uiso calc R 1 . . H H23B .9162 -.1447 .6772 .067 Uiso calc R 1 . . H H23C .8029 -.1856 .5238 .067 Uiso calc R 1 . . H C24 -.2753(12) -.3756(3) -.1430(9) .073(2) Uani d . 1 . . C H24A -.3226 -.3478 -.0771 .109 Uiso calc R 1 . . H H24B -.3877 -.4044 -.1725 .109 Uiso calc R 1 . . H H24C -.2615 -.3597 -.2481 .109 Uiso calc R 1 . . H C25 .0499(14) -.4287(3) -.1517(9) .0691(19) Uani d . 1 . . C H25A -.0604 -.4541 -.2225 .104 Uiso calc R 1 . . H H25B .1815 -.4485 -.0802 .104 Uiso calc R 1 . . H H25C .0966 -.4036 -.2257 .104 Uiso calc R 1 . . H O3 .1742(9) .00264(19) .9091(8) .0832(16) Uani d . 1 . . O H31 .2863 .0024 .8749 .094 Uiso d . 1 . . H H32 .1539 .0350 .9280 .094 Uiso d . 1 . . H loop_ _atom_site_aniso_label _atom_site_aniso_U_11 _atom_site_aniso_U_22 _atom_site_aniso_U_33 _atom_site_aniso_U_12 _atom_site_aniso_U_13 _atom_site_aniso_U_23 O1 .072(3) .057(3) .068(3) -.021(2) -.018(2) .018(2) O2 .087(3) .045(2) .097(4) .009(2) .039(3) -.007(2) N1 .061(3) .045(3) .040(2) -.001(2) .013(2) -.0032(19) C1 .068(4) .044(3) .040(3) -.008(3) .028(3) -.003(2) C2 .082(4) .053(4) .033(3) -.010(3) .020(3) -.001(2) C3 .054(3) .038(3) .038(3) .002(2) .016(2) -.002(2) C4 .043(3) .036(3) .038(3) .001(2) .014(2) .002(2) C5 .040(3) .035(2) .032(2) .006(2) .016(2) .000(2) C6 .056(3) .041(3) .033(2) -.003(2) .020(2) .005(2) C7 .056(3) .044(3) .027(2) -.002(2) .014(2) .006(2) C8 .035(2) .036(2) .032(2) .004(2) .0157(19) .0036(18) C9 .036(2) .039(3) .031(2) .005(2) .0120(19) .006(2) C10 .042(3) .040(3) .028(2) .001(2) .0140(19) .0023(19) C11 .050(3) .049(3) .034(2) .005(2) .018(2) .009(2) C12 .050(3) .043(3) .040(3) -.007(2) .016(2) .006(2) C13 .034(2) .031(2) .038(2) .002(2) .014(2) .004(2) C14 .036(3) .029(2) .035(2) .002(2) .0137(19) .0070(18) C15 .050(3) .043(3) .036(2) .006(2) .014(2) .001(2) C16 .054(3) .041(3) .042(3) .004(2) .009(2) .005(2) C17 .043(3) .038(3) .042(3) -.002(2) .012(2) .004(2) C18 .040(3) .044(3) .060(3) .006(2) .012(2) .005(3) C19 .041(3) .035(3) .040(3) .003(2) .007(2) .005(2) C20 .054(3) .032(3) .053(3) .003(2) .007(3) .000(2) C21 .109(6) .046(4) .065(4) -.014(4) .019(4) .011(3) C22 .058(3) .049(3) .052(3) -.009(3) .024(3) -.006(3) C23 .040(3) .042(3) .053(3) .008(2) .015(2) .006(2) C24 .072(5) .071(5) .058(4) .002(4) -.004(3) -.003(3) C25 .100(6) .051(4) .062(4) -.006(4) .033(4) -.011(3) O3 .094(4) .045(3) .129(4) -.007(2) .061(3) -.013(3) loop_ _atom_type_symbol _atom_type_description _atom_type_scat_dispersion_real _atom_type_scat_dispersion_imag _atom_type_scat_source C C .0033 .0016 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' H H .0000 .0000 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' N N .0061 .0033 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' O O .0106 .0060 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' loop_ _geom_angle_atom_site_label_1 _geom_angle_atom_site_label_2 _geom_angle_atom_site_label_3 _geom_angle _geom_angle_publ_flag C24 N1 C25 110.0(5) y C24 N1 C3 114.7(5) y C25 N1 C3 110.6(5) y C2 C1 C10 109.8(5) n C1 C2 C3 113.2(4) n N1 C3 C4 113.4(4) n N1 C3 C2 114.6(4) n C4 C3 C2 109.2(4) n C22 C4 C5 123.4(5) n C22 C4 C3 124.7(5) n C5 C4 C3 111.8(4) n C4 C5 C6 116.3(4) n C4 C5 C10 109.9(4) n C6 C5 C10 113.3(4) n C7 C6 C5 109.2(4) n C6 C7 C8 111.0(4) n C7 C8 C14 112.9(4) n C7 C8 C9 112.4(4) n C14 C8 C9 112.0(4) n C10 C9 C19 58.5(3) y C10 C9 C11 117.1(4) n C19 C9 C11 116.5(4) n C10 C9 C8 117.9(4) n C19 C9 C8 115.0(4) n C11 C9 C8 118.1(4) n C19 C10 C1 117.8(4) n C19 C10 C9 60.8(3) y C1 C10 C9 121.0(4) n C19 C10 C5 118.9(4) n C1 C10 C5 110.0(4) n C9 C10 C5 120.6(4) n C12 C11 C9 119.1(4) n C13 C12 C11 113.1(4) n C18 C13 C12 108.9(4) n C18 C13 C14 112.9(4) n C12 C13 C14 109.4(4) n C18 C13 C17 109.5(4) n C12 C13 C17 115.1(4) n C14 C13 C17 100.9(4) n C8 C14 C23 111.4(4) n C8 C14 C15 114.6(4) n C23 C14 C15 108.7(4) n C8 C14 C13 109.1(4) n C23 C14 C13 111.2(4) n C15 C14 C13 101.5(4) n C16 C15 C14 105.4(4) n O1 C16 C15 108.9(4) n O1 C16 C17 111.9(5) n C15 C16 C17 105.9(4) n C20 C17 C16 114.2(5) n C20 C17 C13 115.1(4) n C16 C17 C13 105.5(4) n C10 C19 C9 60.8(3) y O2 C20 C21 121.7(6) n O2 C20 C17 123.2(5) n C21 C20 C17 115.1(5) n loop_ _geom_bond_atom_site_label_1 _geom_bond_atom_site_label_2 _geom_bond_site_symmetry_2 _geom_bond_distance _geom_bond_publ_flag O1 C16 . 1.430(6) y O2 C20 . 1.200(7) y N1 C24 . 1.452(8) y N1 C25 . 1.473(8) y N1 C3 . 1.482(7) y C1 C2 . 1.522(8) n C1 C10 . 1.523(7) n C2 C3 . 1.543(7) n C3 C4 . 1.517(7) n C4 C22 . 1.317(7) y C4 C5 . 1.515(7) n C5 C6 . 1.529(6) n C5 C10 . 1.530(6) n C6 C7 . 1.514(7) n C7 C8 . 1.528(7) n C8 C14 . 1.538(7) n C8 C9 . 1.556(6) n C9 C10 . 1.525(7) y C9 C19 . 1.526(7) y C9 C11 . 1.545(7) n C10 C19 . 1.490(7) y C11 C12 . 1.536(7) n C12 C13 . 1.535(6) n C13 C18 . 1.533(7) n C13 C14 . 1.565(6) n C13 C17 . 1.572(7) n C14 C23 . 1.538(7) n C14 C15 . 1.541(7) n C15 C16 . 1.539(8) n C16 C17 . 1.550(7) n C17 C20 . 1.517(7) n C20 C21 . 1.507(9) n loop_ _geom_hbond_atom_site_label_D _geom_hbond_atom_site_label_H _geom_hbond_atom_site_label_A _geom_hbond_site_symmetry_A _geom_hbond_distance_DH _geom_hbond_distance_HA _geom_hbond_distance_DA _geom_hbond_angle_DHA O3 H31 O2 . .82 2.17 2.949(7) 159.4 O3 H32 N1 2_556 .82 2.05 2.829(7) 158.9 O1 H1 O3 1_655 .82 1.98 2.790(6) 170.6 loop_ _geom_torsion_atom_site_label_1 _geom_torsion_atom_site_label_2 _geom_torsion_atom_site_label_3 _geom_torsion_atom_site_label_4 _geom_torsion _geom_torsion_publ_flag C10 C1 C2 C3 -55.4(7) n C24 N1 C3 C4 80.0(6) n C25 N1 C3 C4 -154.8(5) n C24 N1 C3 C2 -46.4(7) n C25 N1 C3 C2 78.8(6) n C1 C2 C3 N1 -177.7(5) n C1 C2 C3 C4 53.8(7) n N1 C3 C4 C22 -3.8(8) n C2 C3 C4 C22 125.4(6) n N1 C3 C4 C5 175.4(4) n C2 C3 C4 C5 -55.4(6) n C22 C4 C5 C6 9.3(7) n C3 C4 C5 C6 -170.0(4) n C22 C4 C5 C10 -121.1(5) n C3 C4 C5 C10 59.6(5) n C4 C5 C6 C7 -179.2(4) n C10 C5 C6 C7 -50.4(6) n C5 C6 C7 C8 69.0(5) n C6 C7 C8 C14 179.4(4) n C6 C7 C8 C9 -52.7(5) n C7 C8 C9 C10 20.5(6) n C14 C8 C9 C10 148.8(4) n C7 C8 C9 C19 86.5(5) n C14 C8 C9 C19 -145.1(4) n C7 C8 C9 C11 -129.7(4) n C14 C8 C9 C11 -1.3(6) n C2 C1 C10 C19 -83.2(6) n C2 C1 C10 C9 -154.2(5) n C2 C1 C10 C5 57.4(6) n C11 C9 C10 C19 -105.9(5) n C8 C9 C10 C19 103.6(4) n C19 C9 C10 C1 106.7(5) n C11 C9 C10 C1 .8(7) n C8 C9 C10 C1 -149.6(4) n C19 C9 C10 C5 -108.2(5) n C11 C9 C10 C5 145.9(4) n C8 C9 C10 C5 -4.5(6) n C4 C5 C10 C19 80.3(5) n C6 C5 C10 C19 -51.7(6) n C4 C5 C10 C1 -59.9(5) n C6 C5 C10 C1 168.1(4) n C4 C5 C10 C9 151.6(4) n C6 C5 C10 C9 19.6(6) n C10 C9 C11 C12 -177.3(4) n C19 C9 C11 C12 116.4(5) n C8 C9 C11 C12 -26.9(6) n C9 C11 C12 C13 4.6(7) n C11 C12 C13 C18 -81.1(5) n C11 C12 C13 C14 42.7(5) n C11 C12 C13 C17 155.6(4) n C7 C8 C14 C23 53.5(5) n C9 C8 C14 C23 -74.6(5) n C7 C8 C14 C15 -70.5(5) n C9 C8 C14 C15 161.4(4) n C7 C8 C14 C13 176.6(4) n C9 C8 C14 C13 48.5(5) n C18 C13 C14 C8 49.6(5) n C12 C13 C14 C8 -71.9(5) n C17 C13 C14 C8 166.3(4) n C18 C13 C14 C23 172.9(4) n C12 C13 C14 C23 51.4(5) n C17 C13 C14 C23 -70.4(5) n C18 C13 C14 C15 -71.7(5) n C12 C13 C14 C15 166.8(4) n C17 C13 C14 C15 45.0(4) n C8 C14 C15 C16 -157.3(4) n C23 C14 C15 C16 77.3(5) n C13 C14 C15 C16 -39.9(5) n C14 C15 C16 O1 -102.0(5) n C14 C15 C16 C17 18.5(5) n O1 C16 C17 C20 -103.9(5) n C15 C16 C17 C20 137.5(5) n O1 C16 C17 C13 128.7(5) n C15 C16 C17 C13 10.2(5) n C18 C13 C17 C20 -41.8(6) n C12 C13 C17 C20 81.3(6) n C14 C13 C17 C20 -161.0(4) n C18 C13 C17 C16 85.1(5) n C12 C13 C17 C16 -151.9(4) n C14 C13 C17 C16 -34.2(5) n C1 C10 C19 C9 -111.9(5) n C5 C10 C19 C9 111.0(4) n C11 C9 C19 C10 106.9(4) n C8 C9 C19 C10 -108.7(4) n C16 C17 C20 O2 -24.3(8) n C13 C17 C20 O2 97.9(6) n C16 C17 C20 C21 156.8(5) n C13 C17 C20 C21 -80.9(6) n loop_ _cod_related_entry_id _cod_related_entry_database _cod_related_entry_code 1 ChemSpider 21182639