#------------------------------------------------------------------------------ #$Date: 2015-01-23 14:30:19 +0200 (Fri, 23 Jan 2015) $ #$Revision: 130086 $ #$URL: file:///home/coder/svn-repositories/cod/cif/2/01/17/2011707.cif $ #------------------------------------------------------------------------------ # # This file is available in the Crystallography Open Database (COD), # http://www.crystallography.net/. The original data for this entry # were provided by IUCr Journals, http://journals.iucr.org/. # # The file may be used within the scientific community so long as # proper attribution is given to the journal article from which the # data were obtained. # data_2011707 loop_ _publ_author_name 'Xia, Jiang' 'Sun, Wei-Yin' 'Xu, Yan' 'Yu, Kai-Bei' 'Tang, Wen-xia' _publ_section_title ; Hydrogen bonds in the framework of bis{2-[bis(2-aminoethyl)amino]ethanol}nickel(II) diperchlorate ; _journal_issue 1 _journal_name_full 'Acta Crystallographica Section C' _journal_page_first 38 _journal_page_last 39 _journal_paper_doi 10.1107/S0108270100014682 _journal_volume 57 _journal_year 2001 _chemical_formula_iupac '[Ni(C6 H17 N3 O)2 ](ClO4 )2 ' _chemical_formula_moiety 'C12 H34 N6 Ni 2+ . 2Cl O4 - ' _chemical_formula_sum 'C12 H34 Cl2 N6 Ni O10' _chemical_formula_weight 552.06 _chemical_name_systematic ; Bis{2-[bis(2-aminoethyl)amino]ethanol}-nickel(II) perchlorate ; _space_group_IT_number 14 _symmetry_cell_setting monoclinic _symmetry_space_group_name_Hall '-P 2yn' _symmetry_space_group_name_H-M 'P 1 21/n 1' _audit_creation_method SHELXL-97 _cell_angle_alpha 90.00 _cell_angle_beta 113.900(10) _cell_angle_gamma 90.00 _cell_formula_units_Z 2 _cell_length_a 9.0260(10) _cell_length_b 12.623(2) _cell_length_c 10.6830(10) _cell_measurement_reflns_used 25 _cell_measurement_temperature 298(2) _cell_measurement_theta_max 16.23 _cell_measurement_theta_min 2.95 _cell_volume 1112.8(3) _computing_cell_refinement XSCANS _computing_data_collection 'XSCANS (Siemens, 1994)' _computing_data_reduction 'SHELXTL (Sheldrick, 1990)' _computing_molecular_graphics SHELXTL _computing_publication_material SHELXTL _computing_structure_refinement 'SHELXL97 (Sheldrick, 1997)' _computing_structure_solution 'SHELXS97 (Sheldrick, 1990)' _diffrn_ambient_temperature 298(2) _diffrn_measured_fraction_theta_full 1.000 _diffrn_measured_fraction_theta_max 1.000 _diffrn_measurement_device_type 'Siemens P4' _diffrn_measurement_method '\w scans' _diffrn_radiation_monochromator graphite _diffrn_radiation_source 'normal-focus sealed tube' _diffrn_radiation_type MoK\a _diffrn_radiation_wavelength .71073 _diffrn_reflns_av_R_equivalents .0156 _diffrn_reflns_av_sigmaI/netI .0237 _diffrn_reflns_limit_h_max 10 _diffrn_reflns_limit_h_min 0 _diffrn_reflns_limit_k_max 15 _diffrn_reflns_limit_k_min 0 _diffrn_reflns_limit_l_max 11 _diffrn_reflns_limit_l_min -12 _diffrn_reflns_number 2397 _diffrn_reflns_theta_full 25.50 _diffrn_reflns_theta_max 25.50 _diffrn_reflns_theta_min 2.50 _diffrn_standards_decay_% 2.25 _diffrn_standards_interval_count 97 _diffrn_standards_number 3 _exptl_absorpt_coefficient_mu 1.173 _exptl_absorpt_correction_T_max .687 _exptl_absorpt_correction_T_min .598 _exptl_absorpt_correction_type empirical _exptl_absorpt_process_details '(North et al., 1968)' _exptl_crystal_colour purple _exptl_crystal_density_diffrn 1.648 _exptl_crystal_density_meas ? _exptl_crystal_density_method 'not measured' _exptl_crystal_description prism _exptl_crystal_F_000 580 _exptl_crystal_size_max .50 _exptl_crystal_size_mid .44 _exptl_crystal_size_min .32 _refine_diff_density_max .585 _refine_diff_density_min -.389 _refine_ls_extinction_coef .0079(18) _refine_ls_extinction_method 'SHELXL97 (Sheldrick, 1997)' _refine_ls_goodness_of_fit_ref 1.064 _refine_ls_hydrogen_treatment mixed _refine_ls_matrix_type full _refine_ls_number_parameters 192 _refine_ls_number_reflns 2061 _refine_ls_number_restraints 10 _refine_ls_restrained_S_all 1.077 _refine_ls_R_factor_all .0454 _refine_ls_R_factor_gt .0367 _refine_ls_shift/su_max .001 _refine_ls_shift/su_mean .000 _refine_ls_structure_factor_coef Fsqd _refine_ls_weighting_details 'calc w = 1/[\s^2^(Fo^2^)+(0.0669P)^2^+0.1837P] where P=(Fo^2^+2Fc^2^)/3' _refine_ls_weighting_scheme calc _refine_ls_wR_factor_ref .1052 _reflns_number_gt 1700 _reflns_number_total 2061 _reflns_threshold_expression I>2\s(I) _[local]_cod_data_source_file de1158.cif _[local]_cod_data_source_block I _[local]_cod_cif_authors_sg_H-M 'P 21/n' _cod_depositor_comments ; The following automatic conversions were performed: '_symmetry_cell_setting' value 'Monoclinic' changed to 'monoclinic' according to '/home/saulius/struct/CIF-dictionaries/cif_core.dic' dictionary named 'cif_core.dic' version 2.4.1 from 2010-06-29. Automatic conversion script Id: cif_fix_enum 1527 2010-12-29 10:47:43Z saulius The following automatic conversions were performed: '_symmetry_cell_setting' value 'Monoclinic' changed to 'monoclinic' according to /home/saulius/struct/CIF-dictionaries/cif_core.dic dictionary named 'cif_core.dic' version 2.4.1 from 2010-06-29. '_geom_hbond_publ_flag' value 'YES' changed to 'yes' according to /home/saulius/struct/CIF-dictionaries/cif_core.dic dictionary named 'cif_core.dic' version 2.4.1 from 2010-06-29 (4 times). Automatic conversion script Id: cif_fix_values 1715 2011-07-08 13:25:40Z adriana The following automatic conversions were performed: '_exptl_crystal_density_meas' value 'not measured' was changed to '?' - the value is perceived as not measured. Automatic conversion script Id: cif_fix_values 3008 2015-01-20 13:52:24Z robertas ; _cod_original_cell_volume 1112.8(2) _cod_database_code 2011707 _cod_database_fobs_code 2011707 loop_ _symmetry_equiv_pos_as_xyz 'x, y, z' '-x+1/2, y+1/2, -z+1/2' '-x, -y, -z' 'x-1/2, -y-1/2, z-1/2' loop_ _atom_site_label _atom_site_fract_x _atom_site_fract_y _atom_site_fract_z _atom_site_U_iso_or_equiv _atom_site_adp_type _atom_site_calc_flag _atom_site_refinement_flags _atom_site_occupancy _atom_site_disorder_assembly _atom_site_disorder_group _atom_site_type_symbol Ni .0000 .0000 .0000 .03322(19) Uani d S 1 . . Ni O1 .3478(3) .3406(2) .0922(3) .0696(7) Uani d D 1 . . O N1 .1795(3) .11752(18) .0019(2) .0399(5) Uani d . 1 . . N N2 .0635(3) -.07110(19) -.1514(3) .0475(6) Uani d . 1 . . N H2A .0853 -.1402 -.1320 .057 Uiso calc R 1 . . H H2B -.0203 -.0661 -.2338 .057 Uiso calc R 1 . . H N3 .2068(3) -.06743(19) .1594(2) .0450(6) Uani d . 1 . . N H3A .1894 -.0718 .2364 .054 Uiso calc R 1 . . H H3B .2231 -.1334 .1355 .054 Uiso calc R 1 . . H C1 .2132(5) .0962(3) -.1195(4) .0661(10) Uani d . 1 . . C H1A .3202 .1229 -.1030 .079 Uiso calc R 1 . . H H1B .1355 .1347 -.1968 .079 Uiso calc R 1 . . H C2 .2054(6) -.0183(3) -.1560(5) .0717(11) Uani d . 1 . . C H2C .2026 -.0251 -.2474 .086 Uiso calc R 1 . . H H2D .3027 -.0534 -.0930 .086 Uiso calc R 1 . . H C3 .3212(4) .1045(3) .1340(4) .0633(9) Uani d . 1 . . C H3C .4166 .1305 .1234 .076 Uiso calc R 1 . . H H3D .3052 .1486 .2019 .076 Uiso calc R 1 . . H C4 .3522(5) -.0024(3) .1854(5) .0775(13) Uani d . 1 . . C H4A .4158 .0004 .2835 .093 Uiso calc R 1 . . H H4B .4174 -.0376 .1446 .093 Uiso calc R 1 . . H C5 .1144(4) .2271(3) -.0080(4) .0623(9) Uani d . 1 . . C H5A .0976 .2407 .0747 .075 Uiso calc R 1 . . H H5B .0086 .2285 -.0837 .075 Uiso calc R 1 . . H C6 .2115(5) .3185(3) -.0272(4) .0701(10) Uani d D 1 . . C H6A .2455 .3015 -.1001 .084 Uiso calc R 1 . . H H6B .1433 .3810 -.0545 .084 Uiso calc R 1 . . H Cl -.2791(7) .3491(5) .0071(5) .0512(11) Uani d PD .50 A 1 Cl O2 -.3952(13) .4190(7) .0207(17) .068(3) Uani d PD .50 A 1 O O3 -.1755(11) .3094(7) .1357(6) .079(3) Uani d PD .50 A 1 O O4 -.3545(12) .2592(6) -.0712(11) .117(4) Uani d PD .50 A 1 O O5 -.1852(10) .4025(6) -.0511(10) .111(3) Uani d PD .50 A 1 O Cl' -.2914(8) .3279(5) .0128(6) .0567(14) Uani d PD .50 B 2 Cl O2' -.4037(18) .4124(10) -.0151(19) .111(6) Uani d PD .50 B 2 O O3' -.3515(17) .2410(8) .0609(19) .205(6) Uani d PD .50 B 2 O O4' -.2909(14) .2925(11) -.1112(8) .122(4) Uani d PD .50 B 2 O O5' -.1399(12) .3495(13) .1173(15) .201(9) Uani d PD .50 B 2 O H1 .417(3) .372(4) .075(2) .110(18) Uiso d D 1 . . H loop_ _atom_site_aniso_label _atom_site_aniso_U_11 _atom_site_aniso_U_22 _atom_site_aniso_U_33 _atom_site_aniso_U_12 _atom_site_aniso_U_13 _atom_site_aniso_U_23 Ni .0295(3) .0379(3) .0331(3) .00180(19) .01355(19) -.00067(19) O1 .0707(16) .0752(17) .0666(16) -.0282(14) .0316(14) -.0081(13) N1 .0337(12) .0455(13) .0412(13) -.0011(10) .0160(10) .0023(10) N2 .0505(15) .0484(14) .0488(14) .0003(11) .0254(12) -.0096(11) N3 .0412(13) .0450(14) .0458(13) .0047(11) .0146(11) .0041(11) C1 .078(2) .077(2) .062(2) -.019(2) .0470(19) -.0085(18) C2 .091(3) .068(2) .087(3) -.009(2) .068(3) -.0165(19) C3 .0449(17) .074(2) .056(2) -.0156(17) .0050(15) .0099(17) C4 .050(2) .068(2) .082(3) -.0069(18) -.0062(19) .020(2) C5 .0443(17) .0475(18) .092(3) -.0049(14) .0243(17) -.0018(17) C6 .065(2) .053(2) .084(3) -.0085(18) .021(2) .0076(19) Cl .063(2) .0437(17) .0414(17) .0168(12) .0157(13) -.0030(12) O2 .078(5) .041(4) .115(8) .010(3) .071(5) .002(4) O3 .100(7) .084(5) .037(3) .031(4) .011(3) .008(3) O4 .113(7) .064(5) .129(8) .007(4) .002(5) -.066(6) O5 .127(6) .118(6) .142(6) .040(5) .112(6) .043(5) Cl' .062(2) .055(3) .063(2) .0285(16) .0362(17) .0077(15) O2' .144(9) .093(7) .111(9) .081(7) .068(6) .016(5) O3' .251(15) .126(8) .324(15) .055(9) .205(14) .116(10) O4' .130(8) .178(11) .066(4) .080(7) .048(5) .005(5) O5' .057(5) .239(17) .260(18) -.032(8) .016(8) -.146(13) loop_ _atom_type_symbol _atom_type_description _atom_type_scat_dispersion_real _atom_type_scat_dispersion_imag _atom_type_scat_source C C .0033 .0016 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' H H .0000 .0000 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' N N .0061 .0033 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' O O .0106 .0060 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' Cl Cl .1484 .1585 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' Ni Ni .3393 1.1124 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' loop_ _geom_angle_atom_site_label_1 _geom_angle_atom_site_label_2 _geom_angle_atom_site_label_3 _geom_angle_site_symmetry_1 _geom_angle_site_symmetry_3 _geom_angle _geom_angle_publ_flag N2 Ni N2 . 3 180.00(16) yes N2 Ni N3 . . 91.17(10) yes N2 Ni N3 3 . 88.83(10) yes N2 Ni N3 . 3 88.83(10) ? N2 Ni N3 3 3 91.17(10) ? N3 Ni N3 . 3 180.00(16) yes N2 Ni N1 . 3 97.68(9) yes N2 Ni N1 3 3 82.32(9) yes N3 Ni N1 . 3 98.18(9) yes N3 Ni N1 3 3 81.82(9) yes N2 Ni N1 . . 82.32(9) ? N2 Ni N1 3 . 97.68(9) ? N3 Ni N1 . . 81.82(9) ? N3 Ni N1 3 . 98.18(9) ? N1 Ni N1 3 . 180.00(12) yes C1 N1 C3 . . 114.3(3) ? C1 N1 C5 . . 108.9(3) ? C3 N1 C5 . . 109.5(3) ? C1 N1 Ni . . 106.50(19) ? C3 N1 Ni . . 106.47(18) ? C5 N1 Ni . . 111.06(17) ? C2 N2 Ni . . 110.11(19) ? C4 N3 Ni . . 110.69(18) ? N1 C1 C2 . . 113.8(3) ? N2 C2 C1 . . 112.4(3) ? C4 C3 N1 . . 115.3(3) ? C3 C4 N3 . . 115.4(3) ? N1 C5 C6 . . 119.0(3) ? O1 C6 C5 . . 111.9(3) ? O3 Cl O5 . . 108.7(6) ? O3 Cl O4 . . 105.3(7) ? O5 Cl O4 . . 110.8(7) ? O3 Cl O2 . . 110.3(8) ? O5 Cl O2 . . 110.4(6) ? O4 Cl O2 . . 111.2(8) ? O5' Cl' O4' . . 116.1(10) ? O5' Cl' O3' . . 104.9(9) ? O4' Cl' O3' . . 104.2(8) ? O5' Cl' O2' . . 114.0(11) ? O4' Cl' O2' . . 108.5(9) ? O3' Cl' O2' . . 108.3(9) ? loop_ _geom_bond_atom_site_label_1 _geom_bond_atom_site_label_2 _geom_bond_site_symmetry_2 _geom_bond_distance _geom_bond_publ_flag Ni N2 . 2.122(2) yes Ni N2 3 2.122(2) yes Ni N3 . 2.129(2) yes Ni N3 3 2.129(2) yes Ni N1 3 2.191(2) yes Ni N1 . 2.191(2) yes O1 C6 . 1.395(5) ? N1 C1 . 1.472(4) ? N1 C3 . 1.480(4) ? N1 C5 . 1.490(4) ? N2 C2 . 1.462(4) ? N3 C4 . 1.475(4) ? C1 C2 . 1.492(5) ? C3 C4 . 1.441(5) ? C5 C6 . 1.512(5) ? Cl O3 . 1.404(4) ? Cl O5 . 1.409(5) ? Cl O4 . 1.410(4) ? Cl O2 . 1.422(5) ? Cl' O5' . 1.398(5) ? Cl' O4' . 1.400(5) ? Cl' O3' . 1.410(5) ? Cl' O2' . 1.417(5) ? loop_ _geom_hbond_atom_site_label_D _geom_hbond_atom_site_label_H _geom_hbond_atom_site_label_A _geom_hbond_site_symmetry_A _geom_hbond_distance_DH _geom_hbond_distance_HA _geom_hbond_distance_DA _geom_hbond_angle_DHA _geom_hbond_publ_flag O1 H1 O2 1_655 .82(3) 2.09(3) 2.895(14) 168(5) yes O1 H1 O2' 1_655 .82(3) 2.25(3) 3.041(18) 162(4) yes N2 H2A O3 3_555 .8997 2.2918 3.156(9) 161.02 yes N3 H3A O1 2_545 .8995 2.2774 3.113(4) 154.47 yes N3 H3B O4 3_555 .9004 2.2495 3.089(10) 155.01 yes N3 H3B O4' 3_555 .9004 2.1457 3.038(14) 170.87 yes loop_ _geom_torsion_atom_site_label_1 _geom_torsion_atom_site_label_2 _geom_torsion_atom_site_label_3 _geom_torsion_atom_site_label_4 _geom_torsion_site_symmetry_1 _geom_torsion N2 Ni N1 C1 . 12.6(2) N2 Ni N1 C1 3 -167.4(2) N3 Ni N1 C1 . 104.9(2) N3 Ni N1 C1 3 -75.1(2) N1 Ni N1 C1 3 -10E1(2) N2 Ni N1 C3 . -109.8(2) N2 Ni N1 C3 3 70.2(2) N3 Ni N1 C3 . -17.5(2) N3 Ni N1 C3 3 162.5(2) N1 Ni N1 C3 3 13E1(2) N2 Ni N1 C5 . 131.0(2) N2 Ni N1 C5 3 -49.0(2) N3 Ni N1 C5 . -136.6(2) N3 Ni N1 C5 3 43.4(2) N1 Ni N1 C5 3 2E1(2) N2 Ni N2 C2 3 10E1(10) N3 Ni N2 C2 . -71.7(3) N3 Ni N2 C2 3 108.3(3) N1 Ni N2 C2 3 -170.1(2) N1 Ni N2 C2 . 9.9(2) N2 Ni N3 C4 . 82.5(3) N2 Ni N3 C4 3 -97.5(3) N3 Ni N3 C4 3 9E1(10) N1 Ni N3 C4 3 -179.6(3) N1 Ni N3 C4 . .4(3) C3 N1 C1 C2 . 83.5(4) C5 N1 C1 C2 . -153.6(3) Ni N1 C1 C2 . -33.8(4) Ni N2 C2 C1 . -31.3(4) N1 C1 C2 N2 . 45.1(5) C1 N1 C3 C4 . -83.8(4) C5 N1 C3 C4 . 153.7(4) Ni N1 C3 C4 . 33.5(4) N1 C3 C4 N3 . -36.1(5) Ni N3 C4 C3 . 18.3(5) C1 N1 C5 C6 . -55.0(4) C3 N1 C5 C6 . 70.7(4) Ni N1 C5 C6 . -172.0(3) N1 C5 C6 O1 . -73.1(5)