#------------------------------------------------------------------------------ #$Date: 2013-08-29 18:37:19 +0300 (Thu, 29 Aug 2013) $ #$Revision: 88064 $ #$URL: file:///home/coder/svn-repositories/cod/cif/2/01/17/2011765.cif $ #------------------------------------------------------------------------------ # # This file is available in the Crystallography Open Database (COD), # http://www.crystallography.net/. The original data for this entry # were provided by IUCr Journals, http://journals.iucr.org/. # # The file may be used within the scientific community so long as # proper attribution is given to the journal article from which the # data were obtained. # data_2011765 loop_ _publ_author_name 'Low, John Nicolson' 'Marchal, Antonio' 'Nogueras, Manuel' 'Melguizo, Manuel' 'S\'anchez, Adolfo' _publ_section_title ; 4-(1-Adamantylamino)-2-amino-6-methoxy-5-nitrosopyrimidine ; _journal_issue 2 _journal_name_full 'Acta Crystallographica Section C' _journal_page_first 178 _journal_page_last 179 _journal_volume 57 _journal_year 2001 _chemical_formula_moiety 'C15 H21 N5 O2' _chemical_formula_sum 'C15 H21 N5 O2' _chemical_formula_weight 303.37 _chemical_name_systematic ; 4-(1-Adamantylamino)-2-amino-6-methoxy-5-nitrosopyrimidine ; _space_group_IT_number 62 _symmetry_cell_setting orthorhombic _symmetry_space_group_name_Hall '-P 2ac 2n' _symmetry_space_group_name_H-M 'P n m a' _cell_angle_alpha 90 _cell_angle_beta 90 _cell_angle_gamma 90 _cell_formula_units_Z 4 _cell_length_a 29.207(2) _cell_length_b 6.5860(4) _cell_length_c 7.4782(4) _cell_measurement_reflns_used 1463 _cell_measurement_temperature 150.0(10) _cell_measurement_theta_max 25.93 _cell_measurement_theta_min 1.39 _cell_volume 1438.49(15) _computing_cell_refinement 'DENZO (Otwinowski & Minor, 1997)' _computing_data_collection 'KappaCCD Server Software (Nonius, 1997)' _computing_data_reduction DENZO _computing_molecular_graphics 'PLATON (Spek, 2000)' _computing_publication_material 'SHELXL97 and PRPKAPPA (Ferguson, 1999)' _computing_structure_refinement 'SHELXL97 (Sheldrick, 1997)' _computing_structure_solution 'SHELXS97 (Sheldrick, 1997)' _diffrn_ambient_temperature 150.0(10) _diffrn_measured_fraction_theta_full .95 _diffrn_measured_fraction_theta_max .95 _diffrn_measurement_device_type KappaCCD _diffrn_measurement_method '\f scans and \w scans with \k offsets' _diffrn_radiation_monochromator graphite _diffrn_radiation_source 'fine-focus sealed X-ray tube' _diffrn_radiation_type 'Mo K\a' _diffrn_radiation_wavelength .71073 _diffrn_reflns_av_R_equivalents .055 _diffrn_reflns_av_sigmaI/netI .108 _diffrn_reflns_limit_h_max 0 _diffrn_reflns_limit_h_min -35 _diffrn_reflns_limit_k_max 8 _diffrn_reflns_limit_k_min 0 _diffrn_reflns_limit_l_max 0 _diffrn_reflns_limit_l_min -9 _diffrn_reflns_number 8692 _diffrn_reflns_theta_full 25.93 _diffrn_reflns_theta_max 25.93 _diffrn_reflns_theta_min 1.39 _diffrn_standards_decay_% negligible _exptl_absorpt_coefficient_mu .097 _exptl_absorpt_correction_T_max .990 _exptl_absorpt_correction_T_min .986 _exptl_absorpt_correction_type multi-scan _exptl_absorpt_process_details '(SORTAV; Blessing, 1995)' _exptl_crystal_colour pink _exptl_crystal_density_diffrn 1.401 _exptl_crystal_density_method 'not measured' _exptl_crystal_description block _exptl_crystal_F_000 648 _exptl_crystal_size_max .15 _exptl_crystal_size_mid .15 _exptl_crystal_size_min .10 _refine_diff_density_max .37 _refine_diff_density_min -.40 _refine_ls_extinction_method none _refine_ls_goodness_of_fit_ref .91 _refine_ls_hydrogen_treatment constr _refine_ls_matrix_type full _refine_ls_number_parameters 124 _refine_ls_number_reflns 1463 _refine_ls_number_restraints 0 _refine_ls_restrained_S_all .91 _refine_ls_R_factor_all .146 _refine_ls_R_factor_gt .060 _refine_ls_shift/su_max <0.001 _refine_ls_shift/su_mean .000 _refine_ls_structure_factor_coef Fsqd _refine_ls_weighting_details 'w = 1/[\s^2^(Fo^2^)+(0.106P)^2^] where P=(Fo^2^+2Fc^2^)/3' _refine_ls_weighting_scheme calc _refine_ls_wR_factor_ref .181 _reflns_number_gt 712 _reflns_number_total 1463 _reflns_threshold_expression I>2\s(I) _[local]_cod_data_source_file gg1029.cif _[local]_cod_data_source_block II _cod_original_cell_volume 1438.48(16) _cod_database_code 2011765 loop_ _symmetry_equiv_pos_as_xyz 'x, y, z' '-x+1/2, -y, z+1/2' 'x+1/2, -y+1/2, -z+1/2' '-x, y+1/2, -z' '-x, -y, -z' 'x+1/2, y, -z+1/2' '-x+1/2, y+1/2, z+1/2' 'x, -y+1/2, z' loop_ _atom_site_label _atom_site_fract_x _atom_site_fract_y _atom_site_fract_z _atom_site_U_iso_or_equiv _atom_site_adp_type _atom_site_calc_flag _atom_site_refinement_flags _atom_site_occupancy _atom_site_disorder_assembly _atom_site_disorder_group _atom_site_type_symbol N1 .53635(12) 0.25 .4280(5) .0301(9) Uani d S 1 . . N C2 .49034(16) 0.25 .4468(6) .0296(11) Uani d S 1 . . C N2 .47434(12) 0.25 .6120(5) .0335(10) Uani d S 1 . . N N3 .45796(11) 0.25 .3152(5) .0295(10) Uani d S 1 . . N C4 .47293(15) 0.25 .1520(6) .0300(11) Uani d S 1 . . C O4 .44369(10) 0.25 .0155(4) .0350(9) Uani d S 1 . . O C41 .39568(15) 0.25 .0603(6) .0427(13) Uani d S 1 . . C C5 .52116(14) 0.25 .1070(5) .0268(11) Uani d S 1 . . C N5 .53174(13) 0.25 -.0670(5) .0342(10) Uani d S 1 . . N O5 .57434(10) 0.25 -.1102(4) .0433(9) Uani d S 1 . . O C6 .55148(16) 0.25 .2594(6) .0310(11) Uani d S 1 . . C N6 .59647(12) 0.25 .2251(5) .0358(10) Uani d S 1 . . N C61 .63514(13) 0.25 .3512(6) .0285(11) Uani d S 1 . . C C62 .67837(13) 0.25 .2342(5) .0315(12) Uani d S 1 . . C C63 .72111(14) 0.25 .3505(6) .0334(12) Uani d S 1 . . C C64 .72130(10) 0.0613(5) .4683(4) .0391(9) Uani d . 1 . . C C65 .67843(11) 0.0612(5) .5853(4) .0415(10) Uani d . 1 . . C C66 .63532(10) 0.0603(5) .4699(4) .0344(9) Uani d . 1 . . C C67 .67846(15) 0.25 .7044(6) .0494(15) Uani d S 1 . . C H2A .4934 0.25 .7031 .040 Uiso calc SR 1 . . H H2B .4446 0.25 .6310 .040 Uiso calc SR 1 . . H H41A .3775 0.25 -.0498 .064 Uiso calc SPR .50 . . H H41B .3885 0.3715 .1305 .064 Uiso calc PR .25 . . H H41C .3885 0.1285 .1305 .064 Uiso calc PR .25 . . H H41D .3921 0.25 .1906 .064 Uiso calc SPR .50 . . H H41E .3811 0.1285 .0103 .064 Uiso calc PR .25 . . H H41F .3811 0.3715 .0103 .064 Uiso calc PR .25 . . H H6 .6040 0.25 .1112 .043 Uiso calc SR 1 . . H H62A .6784 0.1283 .1565 .038 Uiso calc PR .50 . . H H62B .6784 0.3717 .1565 .038 Uiso calc PR .50 . . H H63 .7489 0.25 .2726 .040 Uiso calc SR 1 . . H H64A .7490 0.0608 .5446 .047 Uiso calc R 1 . . H H64B .7218 -0.0620 .3927 .047 Uiso calc R 1 . . H H65 .6786 -0.0628 .6626 .050 Uiso calc R 1 . . H H66A .6078 0.0594 .5472 .041 Uiso calc R 1 . . H H66B .6347 -0.0632 .3945 .041 Uiso calc R 1 . . H H67A .6510 0.25 .7820 .059 Uiso calc SR 1 . . H H67B .7060 0.25 .7818 .059 Uiso calc SR 1 . . H loop_ _atom_site_aniso_label _atom_site_aniso_U_11 _atom_site_aniso_U_22 _atom_site_aniso_U_33 _atom_site_aniso_U_12 _atom_site_aniso_U_13 _atom_site_aniso_U_23 N1 .021(2) .034(2) .035(2) 0 .0013(18) 0 C2 .040(3) .023(2) .026(3) 0 .002(2) 0 N2 .026(2) .042(2) .033(2) 0 -.0030(18) 0 N3 .029(2) .035(2) .025(2) 0 -.0007(19) 0 C4 .030(3) .028(3) .032(3) 0 -.001(2) 0 O4 .026(2) .050(2) .0290(18) 0 -.0051(15) 0 C41 .019(3) .064(3) .045(3) 0 -.003(2) 0 C5 .029(3) .030(3) .021(3) 0 -.005(2) 0 N5 .028(3) .043(2) .032(2) 0 .0018(18) 0 O5 .029(2) .065(2) .036(2) 0 .0032(15) 0 C6 .029(3) .029(3) .035(3) 0 -.001(2) 0 N6 .027(2) .053(3) .027(2) 0 .0032(18) 0 C61 .022(3) .037(3) .027(3) 0 -.001(2) 0 C62 .024(3) .038(3) .033(3) 0 .000(2) 0 C63 .023(3) .041(3) .036(3) 0 .007(2) 0 C64 .025(2) .042(2) .050(2) .0046(17) -.0031(16) .0041(17) C65 .032(2) .042(2) .051(2) .0030(17) .0007(17) .0192(19) C66 .029(2) .029(2) .046(2) .0007(15) .0018(16) -.0010(16) C67 .022(3) .091(4) .035(3) 0 -.004(2) 0 loop_ _geom_bond_atom_site_label_1 _geom_bond_atom_site_label_2 _geom_bond_site_symmetry_2 _geom_bond_distance _geom_bond_publ_flag N1 C6 . 1.336(5) yes N1 C2 . 1.351(5) yes C2 N2 . 1.321(5) yes C2 N3 . 1.364(5) yes N2 H2A . .8800 no N2 H2B . .8800 no N3 C4 . 1.297(5) yes C4 O4 . 1.330(5) no C4 C5 . 1.448(6) yes O4 C41 . 1.442(5) no C41 H41A . .9800 no C41 H41B . .9800 no C41 H41C . .9800 no C41 H41D . .9800 no C41 H41E . .9800 no C41 H41F . .9800 no C5 N5 . 1.338(5) yes C5 C6 . 1.443(6) yes N5 O5 . 1.286(4) yes C6 N6 . 1.339(5) yes N6 C61 . 1.471(5) no N6 H6 . .8800 no C61 C66 8_565 1.533(4) no C61 C66 . 1.533(4) no C61 C62 . 1.536(5) no C62 C63 . 1.522(5) no C62 H62A . .9900 no C62 H62B . .9900 no C63 C64 8_565 1.523(4) no C63 C64 . 1.523(4) no C63 H63 . 1.0000 no C64 C65 . 1.528(4) no C64 H64A . .9900 no C64 H64B . .9900 no C65 C66 . 1.526(4) no C65 C67 . 1.530(4) no C65 H65 . 1.0000 no C66 H66A . .9900 no C66 H66B . .9900 no C67 C65 8_565 1.530(4) no C67 H67A . .9900 no C67 H67B . .9900 no loop_ _atom_type_symbol _atom_type_description _atom_type_scat_dispersion_real _atom_type_scat_dispersion_imag _atom_type_scat_source C C .0033 .0016 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' H H .0000 .0000 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' N N .0061 .0033 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' O O .0106 .0060 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' loop_ _geom_angle_atom_site_label_1 _geom_angle_atom_site_label_2 _geom_angle_atom_site_label_3 _geom_angle_site_symmetry_1 _geom_angle_site_symmetry_3 _geom_angle _geom_angle_publ_flag C6 N1 C2 . . 115.3(4) no N2 C2 N1 . . 116.7(4) no N2 C2 N3 . . 115.4(4) no N1 C2 N3 . . 127.9(4) no C2 N2 H2A . . 120.0 no C2 N2 H2B . . 120.0 no H2A N2 H2B . . 120.0 no C4 N3 C2 . . 116.4(4) no N3 C4 O4 . . 120.4(4) no N3 C4 C5 . . 123.1(4) no O4 C4 C5 . . 116.5(4) no C4 O4 C41 . . 116.5(3) no O4 C41 H41A . . 109.5 no O4 C41 H41B . . 109.5 no H41A C41 H41B . . 109.5 no O4 C41 H41C . . 109.5 no H41A C41 H41C . . 109.5 no H41B C41 H41C . . 109.5 no O4 C41 H41D . . 109.5 no H41A C41 H41D . . 141.1 no H41B C41 H41D . . 56.3 no H41C C41 H41D . . 56.3 no O4 C41 H41E . . 109.5 no H41A C41 H41E . . 56.3 no H41B C41 H41E . . 141.1 no H41C C41 H41E . . 56.3 no H41D C41 H41E . . 109.5 no O4 C41 H41F . . 109.5 no H41A C41 H41F . . 56.3 no H41B C41 H41F . . 56.3 no H41C C41 H41F . . 141.1 no H41D C41 H41F . . 109.5 no H41E C41 H41F . . 109.5 no N5 C5 C6 . . 128.8(4) no N5 C5 C4 . . 116.8(4) no C6 C5 C4 . . 114.4(4) no O5 N5 C5 . . 117.9(3) yes N1 C6 N6 . . 120.4(4) no N1 C6 C5 . . 122.8(4) no N6 C6 C5 . . 116.8(4) no C6 N6 C61 . . 129.1(4) yes C6 N6 H6 . . 115.5 no C61 N6 H6 . . 115.5 no N6 C61 C66 . 8_565 111.9(2) no N6 C61 C66 . . 111.9(2) no C66 C61 C66 8_565 . 109.2(4) no N6 C61 C62 . . 105.4(3) no C66 C61 C62 8_565 . 109.1(2) no C66 C61 C62 . . 109.1(2) no C63 C62 C61 . . 110.4(3) no C63 C62 H62A . . 109.6 no C61 C62 H62A . . 109.6 no C63 C62 H62B . . 109.6 no C61 C62 H62B . . 109.6 no H62A C62 H62B . . 108.1 no C62 C63 C64 . 8_565 109.5(2) no C62 C63 C64 . . 109.5(2) no C64 C63 C64 8_565 . 109.4(4) no C62 C63 H63 . . 109.5 no C64 C63 H63 8_565 . 109.5 no C64 C63 H63 . . 109.5 no C63 C64 C65 . . 109.2(3) no C63 C64 H64A . . 109.8 no C65 C64 H64A . . 109.8 no C63 C64 H64B . . 109.8 no C65 C64 H64B . . 109.8 no H64A C64 H64B . . 108.3 no C66 C65 C64 . . 110.6(3) no C66 C65 C67 . . 109.4(3) no C64 C65 C67 . . 109.4(3) no C66 C65 H65 . . 109.1 no C64 C65 H65 . . 109.1 no C67 C65 H65 . . 109.1 no C65 C66 C61 . . 109.1(3) no C65 C66 H66A . . 109.9 no C61 C66 H66A . . 109.9 no C65 C66 H66B . . 109.9 no C61 C66 H66B . . 109.9 no H66A C66 H66B . . 108.3 no C65 C67 C65 8_565 . 108.8(4) no C65 C67 H67A 8_565 . 109.9 no C65 C67 H67A . . 109.9 no C65 C67 H67B 8_565 . 109.9 no C65 C67 H67B . . 109.9 no H67A C67 H67B . . 108.3 no loop_ _geom_hbond_atom_site_label_D _geom_hbond_atom_site_label_H _geom_hbond_atom_site_label_A _geom_hbond_site_symmetry_A _geom_hbond_distance_DH _geom_hbond_distance_HA _geom_hbond_distance_DA _geom_hbond_angle_DHA _geom_hbond_publ_flag N6 H6 O5 1_555 .88 1.87 2.589(5) 138 y N2 H2A N5 1_556 .88 2.05 2.928(5) 174 y C67 H67A O5 1_556 .99 2.38 3.342(5) 164 y loop_ _geom_torsion_atom_site_label_1 _geom_torsion_atom_site_label_2 _geom_torsion_atom_site_label_3 _geom_torsion_atom_site_label_4 _geom_torsion_site_symmetry_1 _geom_torsion_site_symmetry_4 _geom_torsion _geom_torsion_publ_flag C6 N1 C2 N2 . . 180.0 no C6 N1 C2 N3 . . .0 no N2 C2 N3 C4 . . 180.0 no N1 C2 N3 C4 . . .0 no C2 N3 C4 O4 . . 180.0 no C2 N3 C4 C5 . . .0 no N3 C4 O4 C41 . . .0 no C5 C4 O4 C41 . . 180.0 no N3 C4 C5 N5 . . 180.0 no O4 C4 C5 N5 . . .0 no N3 C4 C5 C6 . . .0 no O4 C4 C5 C6 . . 180.0 no C6 C5 N5 O5 . . .0 no C4 C5 N5 O5 . . 180.0 no C2 N1 C6 N6 . . 180.0 no C2 N1 C6 C5 . . .0 no N5 C5 C6 N1 . . 180.0 no C4 C5 C6 N1 . . .0 no N5 C5 C6 N6 . . .0 no C4 C5 C6 N6 . . 180.0 no N1 C6 N6 C61 . . .0 no C5 C6 N6 C61 . . 180.0 no C6 N6 C61 C66 . 8_565 -61.5(2) no C6 N6 C61 C66 . . 61.5(2) no C6 N6 C61 C62 . . 180.0 no N6 C61 C62 C63 . . 180.0 no C66 C61 C62 C63 8_565 . 59.6(2) no C66 C61 C62 C63 . . -59.6(2) no C61 C62 C63 C64 . 8_565 -59.9(2) no C61 C62 C63 C64 . . 59.9(2) no C62 C63 C64 C65 . . -59.3(4) no C64 C63 C64 C65 8_565 . 60.7(4) no C63 C64 C65 C66 . . 60.0(3) no C63 C64 C65 C67 . . -60.7(4) no C64 C65 C66 C61 . . -59.8(3) no C67 C65 C66 C61 . . 60.8(3) no N6 C61 C66 C65 . . 175.1(3) no C66 C61 C66 C65 8_565 . -60.4(4) no C62 C61 C66 C65 . . 58.8(4) no C66 C65 C67 C65 . 8_565 -60.9(4) no C64 C65 C67 C65 . 8_565 60.4(4) no _cod_database_fobs_code 2011765