#------------------------------------------------------------------------------ #$Date: 2016-02-14 16:26:36 +0200 (Sun, 14 Feb 2016) $ #$Revision: 176435 $ #$URL: file:///home/coder/svn-repositories/cod/cif/2/01/18/2011840.cif $ #------------------------------------------------------------------------------ # # This file is available in the Crystallography Open Database (COD), # http://www.crystallography.net/. The original data for this entry # were provided by IUCr Journals, http://journals.iucr.org/. # # The file may be used within the scientific community so long as # proper attribution is given to the journal article from which the # data were obtained. # data_2011840 loop_ _publ_author_name 'Ramos Silva, M.' 'Paix\~ao, J. A.' 'Matos Beja, A.' 'Alte da Veiga, L.' _publ_section_title ; N-[Tris(hydroxymethyl)methyl]glycine (tricine) ; _journal_issue 4 _journal_name_full 'Acta Crystallographica Section C' _journal_page_first 421 _journal_page_last 422 _journal_paper_doi 10.1107/S0108270100020266 _journal_volume 57 _journal_year 2001 _chemical_formula_moiety 'C6 H13 N1 O5' _chemical_formula_sum 'C6 H13 N O5' _chemical_formula_weight 179.18 _chemical_melting_point 459(2) _chemical_name_common tricine _chemical_name_systematic ; N-[tris(hydroxymethyl)methyl]glycine or N-(2-hydroxy-1,1-bis[hydroxymethyl]ethyl)glycine ; _space_group_IT_number 14 _symmetry_cell_setting monoclinic _symmetry_space_group_name_Hall '-P 2yn' _symmetry_space_group_name_H-M 'P 1 21/n 1' _audit_creation_method SHELXL97 _cell_angle_alpha 90 _cell_angle_beta 107.488(11) _cell_angle_gamma 90 _cell_formula_units_Z 4 _cell_length_a 6.2806(16) _cell_length_b 13.5616(13) _cell_length_c 9.6165(10) _cell_measurement_reflns_used 25 _cell_measurement_temperature 293(2) _cell_measurement_theta_max 14.07 _cell_measurement_theta_min 9.69 _cell_volume 781.2(2) _computing_cell_refinement 'CAD-4 Software' _computing_data_collection 'CAD-4 Software (Enraf-Nonius, 1989)' _computing_data_reduction 'HELENA (Spek, 1997)' _computing_molecular_graphics 'ORTEPII (Johnson, 1976)' _computing_publication_material SHELXL97 _computing_structure_refinement SHELXL97 _computing_structure_solution 'SHELXS97 (Sheldrick, 1990)' _diffrn_ambient_temperature 293(2) _diffrn_measured_fraction_theta_full .996 _diffrn_measured_fraction_theta_max .996 _diffrn_measurement_device_type 'Enraf-Nonius CAD-4' _diffrn_measurement_method 'profile data from \w-2\q scans' _diffrn_radiation_monochromator graphite _diffrn_radiation_source 'fine-focus sealed tube' _diffrn_radiation_type MoK\a _diffrn_radiation_wavelength .71073 _diffrn_reflns_av_R_equivalents .020 _diffrn_reflns_av_sigmaI/netI .011 _diffrn_reflns_limit_h_max 8 _diffrn_reflns_limit_h_min 0 _diffrn_reflns_limit_k_max 19 _diffrn_reflns_limit_k_min 0 _diffrn_reflns_limit_l_max 12 _diffrn_reflns_limit_l_min -13 _diffrn_reflns_number 2434 _diffrn_reflns_theta_full 29.96 _diffrn_reflns_theta_max 29.96 _diffrn_reflns_theta_min 3.00 _diffrn_standards_decay_% 1.1 _diffrn_standards_interval_time 180 _diffrn_standards_number 3 _exptl_absorpt_coefficient_mu .133 _exptl_absorpt_correction_type none _exptl_crystal_colour colourless _exptl_crystal_density_diffrn 1.523 _exptl_crystal_density_method 'not measured' _exptl_crystal_description prism _exptl_crystal_F_000 384 _exptl_crystal_size_max .49 _exptl_crystal_size_mid .20 _exptl_crystal_size_min .12 _refine_diff_density_max .39 _refine_diff_density_min -.19 _refine_ls_extinction_coef .069(6) _refine_ls_extinction_method 'SHELXL97 (Sheldrick, 1997)' _refine_ls_goodness_of_fit_ref 1.063 _refine_ls_hydrogen_treatment refxyz _refine_ls_matrix_type full _refine_ls_number_parameters 149 _refine_ls_number_reflns 2255 _refine_ls_number_restraints 0 _refine_ls_restrained_S_all 1.063 _refine_ls_R_factor_all .039 _refine_ls_R_factor_gt .030 _refine_ls_shift/su_max <0.001 _refine_ls_shift/su_mean .000 _refine_ls_structure_factor_coef Fsqd _refine_ls_weighting_details 'calc w = 1/[\s^2^(Fo^2^)+(0.0479P)^2^+0.1832P] where P=(Fo^2^+2Fc^2^)/3' _refine_ls_weighting_scheme calc _refine_ls_wR_factor_ref .089 _reflns_number_gt 1920 _reflns_number_total 2255 _reflns_threshold_expression I>2\s(I) _cod_data_source_file bj1011.cif _cod_data_source_block I _cod_original_sg_symbol_H-M 'P 21/n' _cod_original_formula_sum 'C6 H13 N1 O5' _cod_database_code 2011840 _cod_database_fobs_code 2011840 loop_ _symmetry_equiv_pos_as_xyz 'x, y, z' '-x+1/2, y+1/2, -z+1/2' '-x, -y, -z' 'x-1/2, -y-1/2, z-1/2' loop_ _atom_site_label _atom_site_fract_x _atom_site_fract_y _atom_site_fract_z _atom_site_U_iso_or_equiv _atom_site_adp_type _atom_site_calc_flag _atom_site_refinement_flags _atom_site_occupancy _atom_site_disorder_assembly _atom_site_disorder_group _atom_site_type_symbol O1 .56659(13) -.09470(6) .61101(8) .02764(18) Uani d . 1 . . O O2 .73866(14) -.11426(6) .84884(8) .02991(19) Uani d . 1 . . O O3 -.04126(12) .10578(5) .42452(7) .02200(16) Uani d . 1 . . O H3 -.012(3) .1509(12) .3772(17) .033 Uiso d . 1 . . H O4 .08633(14) .07186(6) .86253(8) .0321(2) Uani d . 1 . . O H4 .128(3) .0723(13) .955(2) .048 Uiso d . 1 . . H O5 .52284(12) .25370(5) .73708(8) .02664(18) Uani d . 1 . . O H5 .601(3) .2944(12) .7037(17) .040 Uiso d . 1 . . H N1 .32148(12) .05764(5) .65388(8) .01638(16) Uani d . 1 . . N H1A .362(2) .0642(9) .5727(14) .020 Uiso d . 1 . . H H1B .229(2) .0034(9) .6388(13) .020 Uiso d . 1 . . H C1 .61573(15) -.06833(7) .74002(10) .01924(18) Uani d . 1 . . C C2 .52084(16) .02846(7) .77614(10) .0230(2) Uani d . 1 . . C H2A .631(2) .0780(11) .7941(15) .028 Uiso d . 1 . . H H2B .472(2) .0191(10) .8634(15) .028 Uiso d . 1 . . H C3 .19535(14) .15021(6) .67019(9) .01603(17) Uani d . 1 . . C C4 -.04097(15) .13842(7) .56471(10) .01931(18) Uani d . 1 . . C H4A -.121(2) .2010(10) .5605(14) .023 Uiso d . 1 . . H H4B -.119(2) .0884(9) .6017(14) .023 Uiso d . 1 . . H C5 .17907(17) .15926(7) .82451(10) .02172(19) Uani d . 1 . . C H5A .083(2) .2180(10) .8285(15) .026 Uiso d . 1 . . H H5B .323(2) .1727(10) .8919(15) .026 Uiso d . 1 . . H C6 .31037(16) .24088(7) .63172(10) .02139(19) Uani d . 1 . . C H6A .212(2) .2996(10) .6324(14) .026 Uiso d . 1 . . H H6B .329(2) .2318(10) .5356(15) .026 Uiso d . 1 . . H loop_ _atom_site_aniso_label _atom_site_aniso_U_11 _atom_site_aniso_U_22 _atom_site_aniso_U_33 _atom_site_aniso_U_12 _atom_site_aniso_U_13 _atom_site_aniso_U_23 O1 .0325(4) .0312(4) .0196(3) .0082(3) .0084(3) -.0005(3) O2 .0363(4) .0299(4) .0211(3) .0148(3) .0050(3) .0046(3) O3 .0247(3) .0230(3) .0168(3) -.0050(2) .0038(2) -.0011(2) O4 .0386(4) .0375(4) .0213(4) -.0138(3) .0109(3) .0009(3) O5 .0249(4) .0259(4) .0271(4) -.0103(3) .0048(3) -.0002(3) N1 .0169(3) .0154(3) .0154(3) .0010(2) .0027(3) -.0010(2) C1 .0186(4) .0199(4) .0201(4) .0027(3) .0072(3) .0021(3) C2 .0222(4) .0223(4) .0197(4) .0058(3) -.0011(3) -.0020(3) C3 .0174(4) .0142(3) .0160(3) .0003(3) .0042(3) -.0012(3) C4 .0171(4) .0216(4) .0183(4) .0009(3) .0039(3) -.0001(3) C5 .0263(4) .0221(4) .0175(4) -.0010(3) .0077(3) -.0028(3) C6 .0245(4) .0170(4) .0211(4) -.0038(3) .0046(3) .0002(3) loop_ _atom_type_symbol _atom_type_description _atom_type_scat_dispersion_real _atom_type_scat_dispersion_imag _atom_type_scat_source C C .0033 .0016 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' H H .0000 .0000 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' N N .0061 .0033 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' O O .0106 .0060 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' loop_ _geom_angle_atom_site_label_1 _geom_angle_atom_site_label_2 _geom_angle_atom_site_label_3 _geom_angle _geom_angle_publ_flag C4 O3 H3 111.1(11) ? C5 O4 H4 104.1(12) ? C6 O5 H5 109.3(11) ? C2 N1 C3 118.62(7) yes C2 N1 H1A 108.7(8) ? C3 N1 H1A 107.6(8) ? C2 N1 H1B 104.7(8) ? C3 N1 H1B 110.5(8) ? H1A N1 H1B 106.0(11) ? O1 C1 O2 126.47(9) ? O1 C1 C2 118.71(8) ? O2 C1 C2 114.82(8) ? N1 C2 C1 110.01(7) ? N1 C2 H2A 110.6(9) ? C1 C2 H2A 109.8(9) ? N1 C2 H2B 107.6(8) ? C1 C2 H2B 109.0(8) ? H2A C2 H2B 109.7(12) ? N1 C3 C5 110.94(7) ? N1 C3 C6 109.97(7) ? C5 C3 C6 110.27(7) ? N1 C3 C4 106.07(7) ? C5 C3 C4 108.53(7) ? C6 C3 C4 110.98(7) ? O3 C4 C3 112.69(7) ? O3 C4 H4A 112.1(8) ? C3 C4 H4A 108.6(8) ? O3 C4 H4B 106.0(8) ? C3 C4 H4B 109.1(8) ? H4A C4 H4B 108.2(11) ? O4 C5 C3 109.72(7) ? O4 C5 H5A 110.9(8) ? C3 C5 H5A 108.5(8) ? O4 C5 H5B 111.3(8) ? C3 C5 H5B 110.3(8) ? H5A C5 H5B 106.1(11) ? O5 C6 C3 109.67(7) ? O5 C6 H6A 110.1(8) ? C3 C6 H6A 107.4(8) ? O5 C6 H6B 109.7(8) ? C3 C6 H6B 109.2(8) ? H6A C6 H6B 110.8(11) ? loop_ _geom_bond_atom_site_label_1 _geom_bond_atom_site_label_2 _geom_bond_site_symmetry_2 _geom_bond_distance _geom_bond_publ_flag O1 C1 . 1.2379(11) yes O2 C1 . 1.2623(11) yes O3 C4 . 1.4184(11) ? O3 H3 . .816(16) ? O4 C5 . 1.4163(12) ? O4 H4 . .851(19) ? O5 C6 . 1.4230(12) ? O5 H5 . .862(17) ? N1 C2 . 1.4906(11) yes N1 C3 . 1.5175(11) yes N1 H1A . .896(13) ? N1 H1B . .923(13) ? C1 C2 . 1.5241(13) ? C2 H2A . .944(15) ? C2 H2B . .985(14) ? C3 C5 . 1.5229(12) ? C3 C6 . 1.5268(12) ? C3 C4 . 1.5338(12) ? C4 H4A . .981(13) ? C4 H4B . .966(13) ? C5 H5A . 1.005(14) ? C5 H5B . .960(14) ? C6 H6A . 1.009(14) ? C6 H6B . .974(13) ? loop_ _geom_hbond_atom_site_label_D _geom_hbond_atom_site_label_H _geom_hbond_atom_site_label_A _geom_hbond_site_symmetry_A _geom_hbond_distance_DH _geom_hbond_distance_HA _geom_hbond_distance_DA _geom_hbond_angle_DHA N1 H1A O1 3_656 .896(13) 1.991(13) 2.8830(11) 173.0(12) N1 H1B O3 3_556 .923(13) 1.876(13) 2.7894(11) 170.3(11) O3 H3 O5 4_565 .816(16) 1.928(16) 2.7347(11) 170.2(15) O4 H4 O2 3_657 .851(19) 1.904(19) 2.7220(11) 160.9(17) O5 H5 O2 2_656 .862(17) 1.764(17) 2.6224(11) 174.0(16) C2 H2A O5 . .944(15) 2.494(14) 3.0781(13) 120.2(10) C2 H2B O4 . .985(14) 2.523(14) 3.1380(15) 120.4(10) C4 H4B O4 . .966(13) 2.462(13) 2.8775(12) 105.7(9) C5 H5B O5 . .960(14) 2.473(13) 2.8460(13) 103.0(9) loop_ _geom_torsion_atom_site_label_1 _geom_torsion_atom_site_label_2 _geom_torsion_atom_site_label_3 _geom_torsion_atom_site_label_4 _geom_torsion _geom_torsion_publ_flag C3 N1 C2 C1 177.57(7) yes O1 C1 C2 N1 19.76(12) yes O2 C1 C2 N1 -159.87(9) yes C2 N1 C3 C5 -39.57(11) yes C2 N1 C3 C6 82.69(10) yes C2 N1 C3 C4 -157.24(8) yes N1 C3 C4 O3 -46.39(9) yes C5 C3 C4 O3 -165.66(7) ? C6 C3 C4 O3 73.02(9) ? N1 C3 C5 O4 -53.88(10) yes C6 C3 C5 O4 -175.96(8) ? C4 C3 C5 O4 62.28(10) ? N1 C3 C6 O5 -66.90(9) yes C5 C3 C6 O5 55.75(10) ? C4 C3 C6 O5 176.05(7) ?