#------------------------------------------------------------------------------ #$Date: 2015-01-23 14:30:19 +0200 (Fri, 23 Jan 2015) $ #$Revision: 130086 $ #$URL: file:///home/coder/svn-repositories/cod/cif/2/01/25/2012500.cif $ #------------------------------------------------------------------------------ # # This file is available in the Crystallography Open Database (COD), # http://www.crystallography.net/. The original data for this entry # were provided by IUCr Journals, http://journals.iucr.org/. # # The file may be used within the scientific community so long as # proper attribution is given to the journal article from which the # data were obtained. # data_2012500 loop_ _publ_author_name 'Low, John Nicolson' 'Cobo, Justo' 'Insuasty, Braulio' 'Nogueras, Manuel' 'Salcedo, Angela' 'S\'anchez, Adolfo' _publ_section_title ;2-(4-Bromophenyl)-1,2-dihydropyrimido[1,2-a]benzimidazol-4(3H)-one and 4-(4-methylphenyl)-3,4-dihydropyrimido[1,2-a]benzimidazol-2(1H)-one form hydrogen-bonded base-paired dimers ; _journal_issue 2 _journal_name_full 'Acta Crystallographica Section C' _journal_page_first o125 _journal_page_last o128 _journal_paper_doi 10.1107/S0108270101021564 _journal_volume 58 _journal_year 2002 _chemical_formula_moiety 'C16 H12 Br N3 O' _chemical_formula_sum 'C16 H12 Br N3 O' _chemical_formula_weight 342.20 _chemical_melting_point 577 _chemical_name_systematic ; 2-(4-Bromophenyl)-1,2-dihydropyrimido[1,2-a]benzimidazol-4(3H)-one ; _space_group_IT_number 14 _symmetry_cell_setting monoclinic _symmetry_space_group_name_Hall '-P 2ybc' _symmetry_space_group_name_H-M 'P 1 21/c 1' _atom_sites_solution_hydrogens geom _atom_sites_solution_primary direct _atom_sites_solution_secondary difmap _cell_angle_alpha 90 _cell_angle_beta 111.280(2) _cell_angle_gamma 90 _cell_formula_units_Z 4 _cell_length_a 6.8807(2) _cell_length_b 16.2254(6) _cell_length_c 13.3379(5) _cell_measurement_reflns_used 3046 _cell_measurement_temperature 120.0(10) _cell_measurement_theta_max 27.44 _cell_measurement_theta_min 3.00 _cell_volume 1387.54(9) _computing_cell_refinement 'DENZO-SMN (Otwinowski & Minor, 1997)' _computing_data_collection 'KappaCCD Server Software (Nonius, 1997)' _computing_data_reduction DENZO-SMN _computing_molecular_graphics 'ORTEPII (Johnson, 1976) and PLATON (Spek, 2001)' _computing_publication_material 'SHELXL97 and PRPKAPPA (Ferguson, 1999)' _computing_structure_refinement 'SHELXL97 (Sheldrick, 1997)' _computing_structure_solution 'SHELXS97 (Sheldrick, 1997)' _diffrn_ambient_temperature 120.0(10) _diffrn_measured_fraction_theta_full .993 _diffrn_measured_fraction_theta_max .963 _diffrn_measurement_device_type 'Nonius KappaCCD area-detector' _diffrn_measurement_method '\f scans, and \w scans with \k offsets' _diffrn_radiation_monochromator graphite _diffrn_radiation_source 'fine-focus sealed X-ray tube' _diffrn_radiation_type 'Mo K\a' _diffrn_radiation_wavelength .71073 _diffrn_reflns_av_R_equivalents .078 _diffrn_reflns_av_sigmaI/netI .066 _diffrn_reflns_limit_h_max 8 _diffrn_reflns_limit_h_min -8 _diffrn_reflns_limit_k_max 21 _diffrn_reflns_limit_k_min -21 _diffrn_reflns_limit_l_max 13 _diffrn_reflns_limit_l_min -17 _diffrn_reflns_number 8697 _diffrn_reflns_theta_full 25.00 _diffrn_reflns_theta_max 27.44 _diffrn_reflns_theta_min 3.00 _diffrn_standards_decay_% negligible _exptl_absorpt_coefficient_mu 2.964 _exptl_absorpt_correction_T_max .943 _exptl_absorpt_correction_T_min .589 _exptl_absorpt_correction_type multi-scan _exptl_absorpt_process_details '(DENZO-SMN; Otwinowski & Minor, 1997)' _exptl_crystal_colour colourless _exptl_crystal_density_diffrn 1.638 _exptl_crystal_density_meas ? _exptl_crystal_density_method 'not measured' _exptl_crystal_description lath _exptl_crystal_F_000 688 _exptl_crystal_size_max .20 _exptl_crystal_size_mid .06 _exptl_crystal_size_min .02 _refine_diff_density_max .71 _refine_diff_density_min -1.55 _refine_ls_extinction_method none _refine_ls_goodness_of_fit_ref 1.010 _refine_ls_hydrogen_treatment constr _refine_ls_matrix_type full _refine_ls_number_parameters 190 _refine_ls_number_reflns 3046 _refine_ls_number_restraints 0 _refine_ls_restrained_S_all 1.010 _refine_ls_R_factor_all .060 _refine_ls_R_factor_gt .043 _refine_ls_shift/su_max .001 _refine_ls_shift/su_mean .000 _refine_ls_structure_factor_coef Fsqd _refine_ls_weighting_details 'w = 1/[\s^2^(Fo^2^)+(0.0658P)^2^] where P=(Fo^2^+2Fc^2^)/3' _refine_ls_weighting_scheme calc _refine_ls_wR_factor_gt .104 _refine_ls_wR_factor_ref .114 _reflns_number_gt 2401 _reflns_number_total 3046 _reflns_threshold_expression I>2\s(I) _[local]_cod_data_source_file gg1087.cif _[local]_cod_data_source_block IVa _[local]_cod_cif_authors_sg_H-M 'P 21/c' _cod_depositor_comments ; The following automatic conversions were performed: '_exptl_crystal_density_meas' value 'not measured' was changed to '?' - the value is perceived as not measured. Automatic conversion script Id: cif_fix_values 3008 2015-01-20 13:52:24Z robertas ; _cod_original_cell_volume 1387.54(8) _cod_database_code 2012500 _cod_database_fobs_code 2012500 loop_ _symmetry_equiv_pos_as_xyz 'x, y, z' '-x, y+1/2, -z+1/2' '-x, -y, -z' 'x, -y+1/2, z+1/2' loop_ _atom_site_label _atom_site_fract_x _atom_site_fract_y _atom_site_fract_z _atom_site_U_iso_or_equiv _atom_site_adp_type _atom_site_calc_flag _atom_site_refinement_flags _atom_site_occupancy _atom_site_disorder_assembly _atom_site_disorder_group _atom_site_type_symbol N1 .8909(4) .40997(15) .06599(19) .0202(5) Uani d . 1 . . N C2 .8971(5) .36859(17) .1653(2) .0202(6) Uani d . 1 . . C C21 .7504(5) .41219(17) .2108(2) .0203(6) Uani d . 1 . . C C22 .5453(5) .43433(17) .1448(3) .0234(7) Uani d . 1 . . C C23 .4160(5) .47768(19) .1863(2) .0227(6) Uani d . 1 . . C C24 .4927(4) .49813(17) .2952(2) .0200(6) Uani d . 1 . . C Br24 .31283(5) .557959(18) .34998(2) .02561(14) Uani d . 1 . . Br C25 .6932(5) .47610(18) .3619(2) .0226(6) Uani d . 1 . . C C26 .8204(5) .43347(17) .3187(3) .0232(7) Uani d . 1 . . C C3 .8401(5) .27790(18) .1389(2) .0227(6) Uani d . 1 . . C C4 .9671(4) .23567(17) .0811(2) .0206(6) Uani d . 1 . . C O4 .9921(4) .16254(12) .07701(17) .0271(5) Uani d . 1 . . O N5 1.0538(4) .29104(14) .02729(18) .0174(5) Uani d . 1 . . N C5A 1.1695(5) .27315(18) -.0394(2) .0196(6) Uani d . 1 . . C C6 1.2800(5) .20374(17) -.0502(2) .0224(6) Uani d . 1 . . C C7 1.3886(5) .21007(19) -.1201(3) .0256(7) Uani d . 1 . . C C8 1.3865(5) .2825(2) -.1770(3) .0276(7) Uani d . 1 . . C C9 1.2770(5) .35229(19) -.1643(2) .0239(7) Uani d . 1 . . C C9A 1.1727(4) .34733(17) -.0929(2) .0197(6) Uani d . 1 . . C N10 1.0655(4) .40985(15) -.05954(19) .0190(5) Uani d . 1 . . N C10A .9990(5) .37510(17) .0111(2) .0181(6) Uani d . 1 . . C H1 .8194 .4557 .0435 .024 Uiso calc R 1 . . H H2 1.0425 .3718 .2195 .024 Uiso calc R 1 . . H H22 .4943 .4195 .0709 .028 Uiso calc R 1 . . H H23 .2787 .4929 .1413 .027 Uiso calc R 1 . . H H25 .7430 .4900 .4361 .027 Uiso calc R 1 . . H H26 .9578 .4187 .3641 .028 Uiso calc R 1 . . H H3A .8608 .2479 .2067 .027 Uiso calc R 1 . . H H3B .6904 .2742 .0933 .027 Uiso calc R 1 . . H H6 1.2812 .1544 -.0117 .027 Uiso calc R 1 . . H H7 1.4658 .1640 -.1293 .031 Uiso calc R 1 . . H H8 1.4601 .2845 -.2250 .033 Uiso calc R 1 . . H H9 1.2744 .4014 -.2035 .029 Uiso calc R 1 . . H loop_ _atom_site_aniso_label _atom_site_aniso_U_11 _atom_site_aniso_U_22 _atom_site_aniso_U_33 _atom_site_aniso_U_12 _atom_site_aniso_U_13 _atom_site_aniso_U_23 N1 .0244(14) .0171(12) .0212(13) .0060(11) .0107(11) -.0011(10) C2 .0209(15) .0196(14) .0209(15) -.0006(12) .0082(12) .0019(12) C21 .0211(16) .0143(13) .0278(16) -.0008(12) .0116(13) .0019(12) C22 .0274(17) .0238(16) .0206(15) -.0036(13) .0105(13) -.0053(12) C23 .0203(15) .0230(15) .0238(15) -.0003(13) .0070(12) -.0019(13) C24 .0235(15) .0162(13) .0244(15) -.0013(12) .0135(12) -.0012(12) Br24 .0305(2) .0222(2) .0303(2) .00089(12) .01833(16) -.00318(12) C25 .0265(16) .0233(15) .0189(14) -.0017(14) .0095(12) .0022(12) C26 .0237(17) .0204(15) .0260(16) .0013(12) .0096(13) .0052(12) C3 .0267(16) .0170(14) .0271(16) -.0035(13) .0132(13) -.0002(13) C4 .0235(16) .0162(14) .0212(15) .0006(12) .0072(12) .0002(11) O4 .0394(13) .0145(10) .0329(12) .0012(9) .0197(10) .0022(9) N5 .0200(13) .0127(11) .0203(12) .0014(10) .0084(10) .0013(10) C5A .0224(15) .0192(14) .0177(14) -.0013(12) .0080(12) -.0012(12) C6 .0234(16) .0146(13) .0263(15) -.0015(12) .0056(13) -.0039(12) C7 .0239(16) .0213(15) .0338(17) .0026(14) .0128(14) -.0088(14) C8 .0307(18) .0271(16) .0294(17) -.0038(14) .0164(14) -.0084(14) C9 .0327(17) .0187(15) .0240(16) -.0036(13) .0149(13) -.0012(12) C9A .0217(15) .0169(14) .0197(14) .0005(12) .0065(12) -.0040(11) N10 .0246(13) .0144(11) .0209(12) .0021(10) .0120(11) -.0003(10) C10A .0200(14) .0148(13) .0192(14) .0004(12) .0066(11) .0023(11) loop_ _atom_type_symbol _atom_type_description _atom_type_scat_dispersion_real _atom_type_scat_dispersion_imag _atom_type_scat_source C C .0033 .0016 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' H H .0000 .0000 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' Br Br -.2901 2.4595 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' N N .0061 .0033 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' O O .0106 .0060 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' loop_ _geom_angle_atom_site_label_1 _geom_angle_atom_site_label_2 _geom_angle_atom_site_label_3 _geom_angle _geom_angle_publ_flag C10A N1 C2 117.2(2) no C10A N1 H1 121.4 no C2 N1 H1 121.4 no N1 C2 C21 109.8(2) no N1 C2 C3 108.1(2) no C21 C2 C3 112.7(2) no N1 C2 H2 108.7 no C21 C2 H2 108.7 no C3 C2 H2 108.7 no C26 C21 C22 118.4(3) no C26 C21 C2 119.8(3) no C22 C21 C2 121.7(3) no C23 C22 C21 121.1(3) no C23 C22 H22 119.4 no C21 C22 H22 119.4 no C24 C23 C22 118.6(3) no C24 C23 H23 120.7 no C22 C23 H23 120.7 no C25 C24 C23 121.2(3) no C25 C24 Br24 121.0(2) no C23 C24 Br24 117.8(2) no C24 C25 C26 119.3(3) no C24 C25 H25 120.3 no C26 C25 H25 120.3 no C21 C26 C25 121.3(3) no C21 C26 H26 119.4 no C25 C26 H26 119.4 no C4 C3 C2 113.8(2) no C4 C3 H3A 108.8 no C2 C3 H3A 108.8 no C4 C3 H3B 108.8 no C2 C3 H3B 108.8 no H3A C3 H3B 107.7 no O4 C4 N5 120.7(3) no O4 C4 C3 125.8(3) no N5 C4 C3 113.4(2) no C4 N5 C10A 123.7(2) no C4 N5 C5A 128.6(2) no C10A N5 C5A 106.3(2) no C6 C5A C9A 122.0(3) no C6 C5A N5 132.8(3) no C9A C5A N5 105.0(2) no C7 C6 C5A 117.0(3) no C7 C6 H6 121.5 no C5A C6 H6 121.5 no C6 C7 C8 121.5(3) no C6 C7 H7 119.2 no C8 C7 H7 119.2 no C7 C8 C9 120.9(3) no C7 C8 H8 119.5 no C9 C8 H8 119.5 no C9A C9 C8 118.0(3) no C9A C9 H9 121.0 no C8 C9 H9 121.0 no C9 C9A C5A 120.4(3) no C9 C9A N10 129.2(3) no C5A C9A N10 110.4(3) no C10A N10 C9A 105.9(2) no N10 C10A N1 128.0(3) no N10 C10A N5 112.4(2) no N1 C10A N5 119.6(3) no loop_ _geom_bond_atom_site_label_1 _geom_bond_atom_site_label_2 _geom_bond_site_symmetry_2 _geom_bond_distance _geom_bond_publ_flag N1 C10A . 1.343(4) no N1 C2 . 1.472(4) no N1 H1 . .8800 no C2 C21 . 1.527(4) no C2 C3 . 1.531(4) no C2 H2 . 1.0000 no C21 C26 . 1.385(4) no C21 C22 . 1.412(4) no C22 C23 . 1.396(4) no C22 H22 . .9500 no C23 C24 . 1.393(4) no C23 H23 . .9500 no C24 C25 . 1.389(4) no C24 Br24 . 1.914(3) no C25 C26 . 1.394(4) no C25 H25 . .9500 no C26 H26 . .9500 no C3 C4 . 1.522(4) no C3 H3A . .9900 no C3 H3B . .9900 no C4 O4 . 1.203(3) no C4 N5 . 1.411(4) no N5 C10A . 1.411(3) no N5 C5A . 1.422(4) no C5A C6 . 1.395(4) no C5A C9A . 1.404(4) no C6 C7 . 1.394(4) no C6 H6 . .9500 no C7 C8 . 1.395(5) no C7 H7 . .9500 no C8 C9 . 1.404(4) no C8 H8 . .9500 no C9 C9A . 1.388(4) no C9 H9 . .9500 no C9A N10 . 1.417(4) no N10 C10A . 1.314(4) no loop_ _geom_hbond_atom_site_label_D _geom_hbond_atom_site_label_H _geom_hbond_atom_site_label_A _geom_hbond_site_symmetry_A _geom_hbond_distance_DH _geom_hbond_distance_HA _geom_hbond_distance_DA _geom_hbond_angle_DHA _geom_hbond_publ_flag N1 H1 N10 3_765 .88 2.30 2.943(3) 129 y C9 H9 CgX 3_765 .95 2.59 3.501(3) 158 y loop_ _geom_torsion_atom_site_label_1 _geom_torsion_atom_site_label_2 _geom_torsion_atom_site_label_3 _geom_torsion_atom_site_label_4 _geom_torsion _geom_torsion_publ_flag C10A N1 C2 C21 -174.8(2) no C10A N1 C2 C3 -51.5(3) no N1 C2 C21 C26 -131.3(3) no C3 C2 C21 C26 108.2(3) no N1 C2 C21 C22 46.5(4) no C3 C2 C21 C22 -74.0(3) no C26 C21 C22 C23 .9(4) no C2 C21 C22 C23 -176.9(3) no C21 C22 C23 C24 -.7(4) no C22 C23 C24 C25 -.1(4) no C22 C23 C24 Br24 179.7(2) no C23 C24 C25 C26 .6(4) no Br24 C24 C25 C26 -179.2(2) no C22 C21 C26 C25 -.3(4) no C2 C21 C26 C25 177.5(3) no C24 C25 C26 C21 -.4(4) no N1 C2 C3 C4 51.5(3) no C21 C2 C3 C4 173.0(2) no C2 C3 C4 O4 159.2(3) no C2 C3 C4 N5 -22.4(4) no O4 C4 N5 C10A 167.4(3) no C3 C4 N5 C10A -11.1(4) no O4 C4 N5 C5A 2.5(5) no C3 C4 N5 C5A -175.9(3) no C4 N5 C5A C6 -20.1(5) no C10A N5 C5A C6 173.0(3) no C4 N5 C5A C9A 165.7(3) no C10A N5 C5A C9A -1.2(3) no C9A C5A C6 C7 -2.3(4) no N5 C5A C6 C7 -175.7(3) no C5A C6 C7 C8 -.2(4) no C6 C7 C8 C9 1.1(5) no C7 C8 C9 C9A .6(5) no C8 C9 C9A C5A -3.0(4) no C8 C9 C9A N10 174.7(3) no C6 C5A C9A C9 4.0(4) no N5 C5A C9A C9 179.0(3) no C6 C5A C9A N10 -174.1(3) no N5 C5A C9A N10 .9(3) no C9 C9A N10 C10A -178.2(3) no C5A C9A N10 C10A -.2(3) no C9A N10 C10A N1 179.3(3) no C9A N10 C10A N5 -.6(3) no C2 N1 C10A N10 -159.2(3) no C2 N1 C10A N5 20.6(4) no C4 N5 C10A N10 -166.6(2) no C5A N5 C10A N10 1.1(3) no C4 N5 C10A N1 13.6(4) no C5A N5 C10A N1 -178.7(2) no