#------------------------------------------------------------------------------ #$Date: 2011-09-28 17:24:46 +0300 (Wed, 28 Sep 2011) $ #$Revision: 26848 $ #$URL: file:///home/coder/svn-repositories/cod/cif/2/01/25/2012579.cif $ #------------------------------------------------------------------------------ # # This file is available in the Crystallography Open Database (COD), # http://www.crystallography.net/ # # All data on this site have been placed in the public domain by the # contributors. # data_2012579 loop_ _publ_author_name 'Seela, Frank' 'Rosemeyer, Helmut' 'Melenewski, Alexander' 'Heithoff, Eva-Maria' 'Eickmeier, Henning' 'Reuter, Hans' _publ_section_title ; The \a-D anomer of 5-aza-7-deaza-2'-deoxyguanosine ; _journal_name_full 'Acta Crystallographica, Section C' _journal_page_first o142 _journal_page_last o144 _journal_volume 58 _journal_year 2002 _chemical_formula_iupac 'C10 H13 N5 O4, H2 O' _chemical_formula_moiety 'C10 H13 N5 O4, H2 O' _chemical_formula_sum 'C10 H15 N5 O5' _chemical_formula_weight 285.27 _chemical_name_common 9-(2-deoxy-\a-D-ribofuranosyl)-5-aza-7-deazaguanine _space_group_IT_number 4 _symmetry_cell_setting monoclinic _symmetry_space_group_name_Hall 'P 2yb' _symmetry_space_group_name_H-M 'P 1 21 1' _cell_angle_alpha 90.00 _cell_angle_beta 107.460(13) _cell_angle_gamma 90.00 _cell_formula_units_Z 2 _cell_length_a 8.5397(14) _cell_length_b 7.1025(14) _cell_length_c 10.7187(16) _cell_measurement_temperature 293(2) _cell_volume 620.17(18) _diffrn_ambient_temperature 293(2) _exptl_crystal_density_diffrn 1.528 _[local]_cod_cif_authors_sg_H-M 'P 21' _cod_depositor_comments ; The following automatic conversions were performed: '_symmetry_cell_setting' value 'Monoclinic' changed to 'monoclinic' according to '/home/saulius/struct/CIF-dictionaries/cif_core.dic' dictionary named 'cif_core.dic' version 2.4.1 from 2010-06-29. Automatic conversion script Id: cif_fix_enum 1527 2010-12-29 10:47:43Z saulius ; _cod_database_code 2012579 loop_ _symmetry_equiv_pos_as_xyz 'x, y, z' '-x, y+1/2, -z' loop_ _atom_site_label _atom_site_fract_x _atom_site_fract_y _atom_site_fract_z _atom_site_U_iso_or_equiv _atom_site_adp_type _atom_site_calc_flag _atom_site_refinement_flags _atom_site_occupancy _atom_site_disorder_assembly _atom_site_disorder_group _atom_site_type_symbol N1 .1546(3) .1286(4) -.0719(2) .0425(6) Uani d U 1 . . N C2 .2080(3) .3054(4) -.0367(2) .0344(6) Uani d U 1 . . C N2 .1206(3) .4459(3) -.1047(2) .0444(6) Uani d DU 1 . . N H21 .020(3) .431(6) -.166(2) .056(2) Uiso d D 1 . . H H22 .153(4) .566(3) -.078(3) .056(2) Uiso d D 1 . . H N3 .3440(2) .3536(3) .06279(18) .0347(5) Uani d U 1 . . N C4 .4222(3) .2059(4) .1264(2) .0325(5) Uani d U 1 . . C N5 .3758(3) .0247(4) .0987(2) .0378(5) Uani d U 1 . . N C6 .2350(4) -.0188(4) -.0050(3) .0449(7) Uani d U 1 . . C O6 .1970(4) -.1842(4) -.0267(3) .0720(8) Uani d U 1 . . O C7 .4833(3) -.0936(5) .1890(3) .0475(7) Uani d U 1 . . C H7 .4781 -.2242 .1924 .056(2) Uiso calc R 1 . . H C8 .5944(4) .0170(5) .2691(3) .0443(7) Uani d U 1 . . C H8 .6815 -.0234 .3392 .056(2) Uiso calc R 1 . . H N9 .5586(3) .2050(4) .2305(2) .0363(5) Uani d U 1 . . N C1' .6423(3) .3777(4) .2885(2) .0380(6) Uani d U 1 . . C H1' .6271 .4721 .2192 .056(2) Uiso calc R 1 . . H C2' .8259(3) .3554(5) .3562(2) .0413(6) Uani d U 1 . . C H2'1 .8690 .2465 .3228 .056(2) Uiso calc R 1 . . H H2'2 .8855 .4665 .3437 .056(2) Uiso calc R 1 . . H C3' .8386(3) .3295(5) .4995(2) .0417(6) Uani d U 1 . . C H3'1 .9418 .3820 .5557 .056(2) Uiso calc R 1 . . H O3' .8285(3) .1340(4) .52308(19) .0593(6) Uani d DU 1 . . O H3'2 .818(3) .130(6) .598(2) .056(2) Uiso d D 1 . . H C4' .6928(3) .4404(5) .5133(2) .0383(6) Uani d U 1 . . C H4' .6442 .3742 .5729 .056(2) Uiso calc R 1 . . H O4' .57465(19) .4487(4) .38377(17) .0487(6) Uani d U 1 . . O C5' .7331(3) .6406(5) .5601(2) .0442(6) Uani d U 1 . . C H5'2 .7961 .7017 .5098 .056(2) Uiso calc R 1 . . H H5'3 .6329 .7118 .5494 .056(2) Uiso calc R 1 . . H O5' .8264(3) .6324(3) .69483(19) .0497(5) Uani d DU 1 . . O H5'1 .834(4) .744(3) .720(3) .056(2) Uiso d D 1 . . H O1 .8449(2) .0247(4) .76920(17) .0511(6) Uani d D 1 . . O H11 .930(2) .048(6) .824(2) .056(2) Uiso d D 1 . . H H12 .777(2) .034(6) .807(2) .056(2) Uiso d D 1 . . H loop_ _atom_site_aniso_label _atom_site_aniso_U_11 _atom_site_aniso_U_22 _atom_site_aniso_U_33 _atom_site_aniso_U_12 _atom_site_aniso_U_13 _atom_site_aniso_U_23 N1 .0456(12) .0329(12) .0430(11) -.0037(11) .0040(9) -.0101(11) C2 .0389(12) .0313(14) .0315(12) -.0056(12) .0085(10) -.0060(11) N2 .0435(11) .0362(13) .0409(11) -.0014(12) -.0064(9) -.0021(11) N3 .0388(10) .0282(11) .0325(9) -.0033(9) .0040(8) -.0011(9) C4 .0351(11) .0297(13) .0322(11) -.0028(11) .0091(9) -.0024(11) N5 .0439(11) .0289(12) .0402(10) -.0001(10) .0118(8) -.0021(10) C6 .0508(15) .0313(15) .0520(15) -.0050(13) .0145(12) -.0106(13) O6 .0814(16) .0278(12) .0904(18) -.0108(12) .0010(14) -.0160(12) C7 .0563(15) .0311(15) .0557(15) .0080(14) .0174(13) .0049(13) C8 .0474(14) .0379(16) .0434(14) .0090(14) .0073(11) .0082(13) N9 .0385(11) .0329(12) .0345(10) .0033(11) .0065(8) .0036(9) C1' .0357(11) .0354(15) .0390(12) -.0015(11) .0051(9) .0024(11) C2' .0326(11) .0525(17) .0373(11) .0014(13) .0082(9) .0018(13) C3' .0376(11) .0460(16) .0360(12) .0083(14) .0028(9) .0005(13) O3' .0909(16) .0474(13) .0354(10) .0232(14) .0128(9) .0070(11) C4' .0356(11) .0410(15) .0374(11) -.0018(13) .0093(9) -.0025(12) O4' .0309(8) .0581(15) .0493(10) .0079(10) .0001(7) -.0145(11) C5' .0389(12) .0419(15) .0459(13) .0022(13) .0039(10) -.0027(14) O5' .0559(11) .0421(11) .0431(10) -.0024(11) .0026(8) -.0084(10) O1 .0489(10) .0640(15) .0369(9) -.0104(12) .0075(7) -.0031(11) loop_ _geom_bond_atom_site_label_1 _geom_bond_atom_site_label_2 _geom_bond_site_symmetry_2 _geom_bond_distance _geom_bond_publ_flag N1 C6 . 1.337(4) yes N1 C2 . 1.350(4) yes C2 N2 . 1.326(4) yes C2 N3 . 1.364(3) yes N2 H21 . .914(18) no N2 H22 . .914(18) no N3 C4 . 1.318(4) yes C4 N9 . 1.349(3) yes C4 N5 . 1.354(4) yes N5 C7 . 1.397(4) yes N5 C6 . 1.406(3) yes C6 O6 . 1.222(4) yes C7 C8 . 1.329(5) yes C7 H7 . .9300 no C8 N9 . 1.404(4) yes C8 H8 . .9300 no N9 C1' . 1.461(4) yes C1' O4' . 1.408(3) yes C1' C2' . 1.525(3) yes C1' H1' . .9800 no C2' C3' . 1.518(3) yes C2' H2'1 . .9700 no C2' H2'2 . .9700 no C3' O3' . 1.419(4) yes C3' C4' . 1.518(4) yes C3' H3'1 . .9800 no O3' H3'2 . .83(2) no C4' O4' . 1.452(3) yes C4' C5' . 1.513(4) yes C4' H4' . .9800 no C5' O5' . 1.426(3) yes C5' H5'2 . .9700 no C5' H5'3 . .9700 no O5' H5'1 . .83(2) no O1 H11 . .802(14) no O1 H12 . .802(14) no