#------------------------------------------------------------------------------ #$Date: 2011-09-10 06:16:28 +0300 (Sat, 10 Sep 2011) $ #$Revision: 25271 $ #$URL: file:///home/coder/svn-repositories/cod/cif/2/2013760.cif $ #------------------------------------------------------------------------------ # # This file is available in the Crystallography Open Database (COD), # http://www.crystallography.net/. The original data for this entry # were provided by IUCr Journals, http://journals.iucr.org/. # # The file may be used within the scientific community so long as # proper attribution is given to the journal article from which the # data were obtained. # data_2013760 loop_ _publ_author_name 'Du, Miao' 'Zhao, Xiao-Jun' _publ_section_title ; Three-dimensional hydrogen-bonding supramolecular architecture of 2-(3-pyridinio)-5-(3-pyridyl)-1,3,4-oxadiazole perchlorate ; _journal_issue 1 _journal_name_full 'Acta Crystallographica Section C' _journal_page_first o54 _journal_page_last o56 _journal_volume 60 _journal_year 2004 _chemical_formula_iupac 'C12 H9 N4 O 1+, Cl O4 1-' _chemical_formula_moiety 'C12 H9 N4 O 1+, Cl O4 1-' _chemical_formula_sum 'C12 H9 Cl N4 O5' _chemical_formula_weight 324.68 _chemical_name_systematic ; 2-(3-Pyridinio)-5-(3-pyridyl)-1,3,4-oxadiazole perchlorate ; _space_group_IT_number 14 _symmetry_cell_setting monoclinic _symmetry_space_group_name_Hall '-P 2yn' _symmetry_space_group_name_H-M 'P 1 21/n 1' _cell_angle_alpha 90.00 _cell_angle_beta 96.382(5) _cell_angle_gamma 90.00 _cell_formula_units_Z 4 _cell_length_a 5.4356(16) _cell_length_b 13.992(4) _cell_length_c 17.955(5) _cell_measurement_reflns_used 5213 _cell_measurement_temperature 293(2) _cell_measurement_theta_max 25.01 _cell_measurement_theta_min 1.85 _cell_volume 1357.1(7) _computing_cell_refinement SMART _computing_data_collection 'SMART (Bruker, 1998)' _computing_data_reduction 'SAINT (Bruker, 1998)' _computing_molecular_graphics 'XP in SHELXTL (Bruker, 1998)' _computing_publication_material SHELXL97 _computing_structure_refinement 'SHELXL97 (Sheldrick, 1997)' _computing_structure_solution 'SHELXS97 (Sheldrick, 1997)' _diffrn_measured_fraction_theta_full 0.992 _diffrn_measured_fraction_theta_max 0.992 _diffrn_measurement_device 'BRUKER SMART 1000' _diffrn_measurement_method \w _diffrn_radiation_type MoK\a _diffrn_radiation_wavelength 0.71073 _diffrn_reflns_av_R_equivalents 0.0606 _diffrn_reflns_limit_h_max 6 _diffrn_reflns_limit_h_min -6 _diffrn_reflns_limit_k_max 16 _diffrn_reflns_limit_k_min -14 _diffrn_reflns_limit_l_max 21 _diffrn_reflns_limit_l_min -21 _diffrn_reflns_number 5507 _diffrn_reflns_theta_full 25.01 _diffrn_reflns_theta_max 25.01 _diffrn_standards_decay_% 0 _diffrn_standards_number 0 _exptl_absorpt_coefficient_mu 0.313 _exptl_absorpt_correction_T_max 0.9258 _exptl_absorpt_correction_T_min 0.8983 _exptl_absorpt_correction_type multi-scan _exptl_absorpt_process_details 'SAINT (Bruker 1998) and SADABS (Sheldrick, 1997)' _exptl_crystal_colour colorless _exptl_crystal_density_diffrn 1.589 _exptl_crystal_description block _exptl_crystal_F_000 664 _exptl_crystal_size_max 0.35 _exptl_crystal_size_mid 0.25 _exptl_crystal_size_min 0.20 _refine_diff_density_max 0.517 _refine_diff_density_min -0.362 _refine_ls_extinction_method none _refine_ls_goodness_of_fit_ref 1.140 _refine_ls_hydrogen_treatment constr _refine_ls_number_parameters 199 _refine_ls_number_reflns 2377 _refine_ls_restrained_S_all 1.143 _refine_ls_R_factor_all 0.1174 _refine_ls_R_factor_gt 0.0595 _refine_ls_shift/su_max 0.000 _refine_ls_shift/su_mean 0.000 _refine_ls_structure_factor_coef Fsqd _refine_ls_weighting_details 'calc w=1/[\s^2^(Fo^2^)+(0.0550P)^2^] where P=(Fo^2^+2Fc^2^)/3' _refine_ls_weighting_scheme calc _refine_ls_wR_factor_gt 0.1347 _refine_ls_wR_factor_ref 0.1547 _reflns_number_gt 1286 _reflns_number_total 2377 _reflns_threshold_expression I>2\s(I) _[local]_cod_data_source_file fg1713.cif _[local]_cod_data_source_block I _[local]_cod_cif_authors_sg_H-M P21/n _[local]_cod_cif_authors_sg_Hall -P_2yn _[local]_cod_chemical_formula_sum_orig ' C12 H9 Cl N4 O5 ' _cod_depositor_comments ; The following automatic conversions were performed: '_symmetry_cell_setting' value 'Monoclinic' changed to 'monoclinic' according to /home/saulius/struct/CIF-dictionaries/cif_core.dic dictionary named 'cif_core.dic' version 2.4.1 from 2010-06-29. Automatic conversion script Id: cif_fix_values 1715 2011-07-08 13:25:40Z adriana ; _cod_database_code 2013760 loop_ _symmetry_equiv_pos_as_xyz 'x, y, z' '-x+1/2, y+1/2, -z+1/2' '-x, -y, -z' 'x-1/2, -y-1/2, z-1/2' loop_ _atom_site_label _atom_site_fract_x _atom_site_fract_y _atom_site_fract_z _atom_site_U_iso_or_equiv _atom_site_adp_type _atom_site_calc_flag _atom_site_refinement_flags _atom_site_occupancy _atom_site_type_symbol O1 0.4919(5) 0.91199(19) 0.61864(14) 0.0460(7) Uani d . 1 O N1 0.7538(7) 0.9359(3) 0.5356(2) 0.0583(10) Uani d . 1 N N2 0.6183(7) 0.8513(3) 0.51552(19) 0.0582(10) Uani d . 1 N N3 0.7163(6) 1.1647(2) 0.73245(17) 0.0464(9) Uani d D 1 N H3 0.6495 1.1818 0.7716 0.056 Uiso calc RD 1 H N4 -0.0240(6) 0.6962(3) 0.63734(19) 0.0524(10) Uani d . 1 N C2 0.6732(8) 0.9672(3) 0.5950(2) 0.0446(10) Uani d . 1 C C5 0.4680(7) 0.8411(3) 0.5661(2) 0.0434(10) Uani d . 1 C C6 0.7514(7) 1.0546(3) 0.6356(2) 0.0419(10) Uani d . 1 C C7 0.6439(7) 1.0827(3) 0.6987(2) 0.0441(10) Uani d . 1 C H7 0.5233 1.0451 0.7172 0.053 Uiso calc R 1 H C8 0.8876(8) 1.2209(3) 0.7079(2) 0.0534(11) Uani d . 1 C H8 0.9286 1.2785 0.7321 0.064 Uiso calc R 1 H C9 1.0038(8) 1.1943(3) 0.6473(2) 0.0551(12) Uani d . 1 C H9 1.1283 1.2322 0.6312 0.066 Uiso calc R 1 H C10 0.9346(8) 1.1119(3) 0.6108(2) 0.0509(11) Uani d . 1 C H10 1.0103 1.0937 0.5691 0.061 Uiso calc R 1 H C11 0.2864(7) 0.7668(3) 0.5709(2) 0.0422(10) Uani d . 1 C C12 0.1460(7) 0.7629(3) 0.6307(2) 0.0467(11) Uani d . 1 C H12 0.1721 0.8092 0.6679 0.056 Uiso calc R 1 H C13 -0.0656(9) 0.6323(3) 0.5824(3) 0.0656(13) Uani d . 1 C H13 -0.1881 0.5866 0.5858 0.079 Uiso calc R 1 H C14 0.0651(9) 0.6308(3) 0.5205(2) 0.0611(13) Uani d . 1 C H14 0.0306 0.5852 0.4831 0.073 Uiso calc R 1 H C15 0.2451(8) 0.6974(3) 0.5155(2) 0.0548(12) Uani d . 1 C H15 0.3396 0.6964 0.4754 0.066 Uiso calc R 1 H Cl1 0.0994(2) 0.93863(9) 0.81949(7) 0.0611(4) Uani d . 1 Cl O2 -0.0547(9) 0.8978(3) 0.7578(2) 0.1169(15) Uani d . 1 O O3 0.3500(8) 0.9254(3) 0.8112(4) 0.160(2) Uani d . 1 O O4 0.0551(9) 1.0349(3) 0.8232(3) 0.163(2) Uani d . 1 O O5 0.0576(11) 0.8928(6) 0.8830(3) 0.205(3) Uani d . 1 O loop_ _atom_site_aniso_label _atom_site_aniso_U_11 _atom_site_aniso_U_22 _atom_site_aniso_U_33 _atom_site_aniso_U_12 _atom_site_aniso_U_13 _atom_site_aniso_U_23 O1 0.0528(18) 0.0492(17) 0.0389(15) -0.0080(14) 0.0179(13) -0.0053(14) N1 0.074(3) 0.053(2) 0.053(2) -0.0155(19) 0.030(2) -0.0132(19) N2 0.073(3) 0.052(2) 0.054(2) -0.011(2) 0.028(2) -0.0094(19) N3 0.050(2) 0.045(2) 0.046(2) 0.0103(17) 0.0111(17) -0.0024(18) N4 0.058(2) 0.049(2) 0.052(2) -0.0076(18) 0.0133(19) 0.005(2) C2 0.056(3) 0.042(2) 0.038(2) -0.002(2) 0.012(2) 0.001(2) C5 0.051(3) 0.040(2) 0.040(2) -0.0042(19) 0.010(2) -0.001(2) C6 0.048(2) 0.040(2) 0.039(2) 0.0002(19) 0.0103(19) -0.001(2) C7 0.042(2) 0.045(3) 0.047(2) 0.0052(19) 0.0114(19) 0.004(2) C8 0.057(3) 0.047(3) 0.056(3) -0.001(2) 0.002(2) -0.005(2) C9 0.060(3) 0.053(3) 0.054(3) -0.011(2) 0.012(2) 0.000(2) C10 0.059(3) 0.054(3) 0.042(2) -0.005(2) 0.018(2) 0.004(2) C11 0.049(3) 0.040(2) 0.038(2) -0.0010(19) 0.0095(19) 0.002(2) C12 0.052(3) 0.043(3) 0.047(3) -0.001(2) 0.014(2) -0.002(2) C13 0.074(3) 0.054(3) 0.070(3) -0.015(3) 0.011(3) 0.015(3) C14 0.093(4) 0.037(3) 0.053(3) -0.019(2) 0.006(3) -0.008(2) C15 0.076(3) 0.045(3) 0.046(3) -0.005(2) 0.016(2) -0.003(2) Cl1 0.0646(8) 0.0576(8) 0.0634(8) 0.0135(6) 0.0177(6) 0.0052(7) O2 0.152(4) 0.092(3) 0.106(3) -0.020(3) 0.006(3) -0.022(3) O3 0.096(3) 0.119(4) 0.280(7) 0.024(3) 0.086(4) 0.009(4) O4 0.171(5) 0.087(3) 0.208(5) 0.053(3) -0.083(4) -0.061(4) O5 0.182(5) 0.321(9) 0.119(4) -0.040(5) 0.041(4) 0.110(5) loop_ _atom_type_symbol _atom_type_description _atom_type_scat_dispersion_real _atom_type_scat_dispersion_imag _atom_type_scat_source C C 0.0033 0.0016 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' H H 0.0000 0.0000 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' N N 0.0061 0.0033 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' O O 0.0106 0.0060 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' Cl Cl 0.1484 0.1585 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' loop_ _geom_angle_atom_site_label_1 _geom_angle_atom_site_label_2 _geom_angle_atom_site_label_3 _geom_angle C2 O1 C5 102.4(3) C8 N3 C7 122.6(4) C8 N3 H3 118.7 C7 N3 H3 118.7 C2 N1 N2 106.4(3) C5 N2 N1 105.3(3) C12 N4 C13 117.9(4) N3 C8 C9 120.3(4) N3 C8 H8 119.9 C9 C8 H8 119.9 C10 C9 C8 119.1(4) C10 C9 H9 120.5 C8 C9 H9 120.5 C9 C10 C6 120.4(4) C9 C10 H10 119.8 C6 C10 H10 119.8 C7 C6 C10 118.6(4) C7 C6 C2 121.2(4) C10 C6 C2 120.1(4) N3 C7 C6 118.9(4) N3 C7 H7 120.5 C6 C7 H7 120.5 N1 C2 O1 113.2(4) N1 C2 C6 126.7(4) O1 C2 C6 120.1(3) N2 C5 O1 112.7(3) N2 C5 C11 127.7(4) O1 C5 C11 119.7(3) C12 C11 C15 117.9(4) C12 C11 C5 120.9(4) C15 C11 C5 121.2(4) C14 C15 C11 119.4(4) C14 C15 H15 120.3 C11 C15 H15 120.3 C15 C14 C13 118.7(4) C15 C14 H14 120.7 C13 C14 H14 120.7 N4 C13 C14 123.0(4) N4 C13 H13 118.5 C14 C13 H13 118.5 N4 C12 C11 123.1(4) N4 C12 H12 118.5 C11 C12 H12 118.5 O5 Cl1 O4 112.2(4) O5 Cl1 O3 106.5(4) O4 Cl1 O3 108.3(3) O5 Cl1 O2 109.0(4) O4 Cl1 O2 109.8(3) O3 Cl1 O2 111.0(3) loop_ _geom_bond_atom_site_label_1 _geom_bond_atom_site_label_2 _geom_bond_distance O1 C2 1.357(4) O1 C5 1.366(4) N3 C8 1.331(5) N3 C7 1.336(5) N3 H3 0.8600 N1 C2 1.275(5) N1 N2 1.419(5) N2 C5 1.295(4) N4 C12 1.329(5) N4 C13 1.331(5) C8 C9 1.370(6) C8 H8 0.9300 C9 C10 1.358(5) C9 H9 0.9300 C10 C6 1.390(5) C10 H10 0.9300 C6 C7 1.389(5) C6 C2 1.462(5) C7 H7 0.9300 C5 C11 1.443(5) C11 C12 1.385(5) C11 C15 1.390(5) C15 C14 1.361(6) C15 H15 0.9300 C14 C13 1.384(6) C14 H14 0.9300 C13 H13 0.9300 C12 H12 0.9300 Cl1 O5 1.350(5) Cl1 O4 1.371(4) Cl1 O3 1.399(4) Cl1 O2 1.431(4) loop_ _geom_hbond_atom_site_label_D _geom_hbond_atom_site_label_H _geom_hbond_atom_site_label_A _geom_hbond_site_symmetry_A _geom_hbond_distance_DH _geom_hbond_distance_HA _geom_hbond_distance_DA _geom_hbond_angle_DHA _geom_hbond_publ_flag N3 H3 N4 2_556 0.86 1.85 2.701(5) 169 yes C10 H10 N1 3_776 0.93 2.43 3.350(5) 172 yes C8 H8 O3 2_656 0.93 2.55 3.232(6) 131 yes C15 H15 O5 4_675 0.93 2.48 3.322(7) 151 yes C12 H12 O2 1_555 0.93 2.47 3.243(6) 141 yes loop_ _geom_torsion_atom_site_label_1 _geom_torsion_atom_site_label_2 _geom_torsion_atom_site_label_3 _geom_torsion_atom_site_label_4 _geom_torsion C2 N1 N2 C5 0.1(5) C7 N3 C8 C9 -2.2(6) N3 C8 C9 C10 2.6(6) C8 C9 C10 C6 -1.1(6) C9 C10 C6 C7 -0.9(6) C9 C10 C6 C2 178.4(4) C8 N3 C7 C6 0.1(6) C10 C6 C7 N3 1.4(6) C2 C6 C7 N3 -177.9(3) N2 N1 C2 O1 0.0(5) N2 N1 C2 C6 -178.0(4) C5 O1 C2 N1 0.0(5) C5 O1 C2 C6 178.1(4) C7 C6 C2 N1 178.0(4) C10 C6 C2 N1 -1.2(7) C7 C6 C2 O1 0.2(6) C10 C6 C2 O1 -179.1(4) N1 N2 C5 O1 -0.1(5) N1 N2 C5 C11 179.0(4) C2 O1 C5 N2 0.1(4) C2 O1 C5 C11 -179.1(4) N2 C5 C11 C12 176.9(4) O1 C5 C11 C12 -4.0(6) N2 C5 C11 C15 -3.6(7) O1 C5 C11 C15 175.4(3) C12 C11 C15 C14 2.2(6) C5 C11 C15 C14 -177.3(4) C11 C15 C14 C13 -2.4(7) C12 N4 C13 C14 2.1(7) C15 C14 C13 N4 0.2(7) C13 N4 C12 C11 -2.3(6) C15 C11 C12 N4 0.2(6) C5 C11 C12 N4 179.7(4)