#------------------------------------------------------------------------------ #$Date: 2015-01-23 14:30:19 +0200 (Fri, 23 Jan 2015) $ #$Revision: 130086 $ #$URL: file:///home/coder/svn-repositories/cod/cif/2/01/37/2013789.cif $ #------------------------------------------------------------------------------ # # This file is available in the Crystallography Open Database (COD), # http://www.crystallography.net/. The original data for this entry # were provided by IUCr Journals, http://journals.iucr.org/. # # The file may be used within the scientific community so long as # proper attribution is given to the journal article from which the # data were obtained. # data_2013789 loop_ _publ_author_name 'Gallagher, John F.' 'Coleman, Claire M.' 'O'Shea, Donal F.' _publ_section_title ; tert-Butyl 5-methoxy-3-pentylindole-1-carboxylate ; _journal_issue 2 _journal_name_full 'Acta Crystallographica Section C' _journal_page_first o149 _journal_page_last o151 _journal_paper_doi 10.1107/S0108270103028154 _journal_volume 60 _journal_year 2004 _chemical_formula_iupac 'C19 H27 N O3' _chemical_formula_moiety 'C19 H27 N O3' _chemical_formula_sum 'C19 H27 N O3' _chemical_formula_weight 317.42 _chemical_melting_point 328 _chemical_name_systematic ; 5-Methoxy-3-pentyl-indole-1-carboxylic acid tert-butyl ester ; _space_group_IT_number 2 _symmetry_cell_setting triclinic _symmetry_space_group_name_Hall '-P 1' _symmetry_space_group_name_H-M 'P -1' _atom_sites_solution_hydrogens geom _atom_sites_solution_primary direct _atom_sites_solution_secondary difmap _cell_angle_alpha 105.001(4) _cell_angle_beta 93.265(6) _cell_angle_gamma 98.902(6) _cell_formula_units_Z 2 _cell_length_a 8.9414(6) _cell_length_b 8.9955(6) _cell_length_c 11.7433(6) _cell_measurement_reflns_used 63 _cell_measurement_temperature 294.0(10) _cell_measurement_theta_max 21.50 _cell_measurement_theta_min 5.45 _cell_volume 896.69(10) _computing_cell_refinement XSCANS _computing_data_collection 'XSCANS (Bruker, 1994)' _computing_data_reduction XSCANS _computing_molecular_graphics 'PLATON (Spek, 1998)' _computing_publication_material 'SHELXL97 and PREP8 (Ferguson, 1998)' _computing_structure_refinement 'SHELXL97 (Sheldrick, 1997)' _computing_structure_solution 'SHELXS97 (Sheldrick, 1997)' _diffrn_ambient_temperature 294.0(10) _diffrn_measured_fraction_theta_full 1.00 _diffrn_measured_fraction_theta_max 1.00 _diffrn_measurement_device 'Bruker P4' _diffrn_measurement_method \w _diffrn_radiation_monochromator graphite _diffrn_radiation_source 'X-ray tube' _diffrn_radiation_type 'Molybdenum K\a' _diffrn_radiation_wavelength 0.71073 _diffrn_reflns_av_R_equivalents 0.044 _diffrn_reflns_av_sigmaI/netI 0.026 _diffrn_reflns_limit_h_max 1 _diffrn_reflns_limit_h_min -11 _diffrn_reflns_limit_k_max 11 _diffrn_reflns_limit_k_min -11 _diffrn_reflns_limit_l_max 15 _diffrn_reflns_limit_l_min -15 _diffrn_reflns_number 4895 _diffrn_reflns_theta_full 27.0 _diffrn_reflns_theta_max 27.5 _diffrn_reflns_theta_min 2.3 _diffrn_standards_decay_% 1 _diffrn_standards_interval_count 296 _diffrn_standards_number 4 _exptl_absorpt_coefficient_mu 0.079 _exptl_absorpt_correction_T_max 1.00 _exptl_absorpt_correction_T_min 1.00 _exptl_absorpt_correction_type none _exptl_crystal_colour colourless _exptl_crystal_density_diffrn 1.176 _exptl_crystal_density_meas ? _exptl_crystal_description block _exptl_crystal_F_000 344 _exptl_crystal_size_max 0.52 _exptl_crystal_size_mid 0.20 _exptl_crystal_size_min 0.15 _refine_diff_density_max 0.38 _refine_diff_density_min -0.19 _refine_ls_extinction_method none _refine_ls_goodness_of_fit_ref 1.030 _refine_ls_hydrogen_treatment constr _refine_ls_matrix_type full _refine_ls_number_parameters 213 _refine_ls_number_reflns 4071 _refine_ls_number_restraints 0 _refine_ls_restrained_S_all 1.030 _refine_ls_R_factor_all 0.0665 _refine_ls_R_factor_gt 0.0475 _refine_ls_shift/su_max 0.001 _refine_ls_shift/su_mean 0.000 _refine_ls_structure_factor_coef Fsqd _refine_ls_weighting_details 'w=1/[\s^2^(Fo^2^)+(0.0687P)^2^+0.12P] where P=(Fo^2^+2Fc^2^)/3' _refine_ls_weighting_scheme calc _refine_ls_wR_factor_gt 0.1195 _refine_ls_wR_factor_ref 0.133 _reflns_number_gt 3004 _reflns_number_total 4071 _reflns_threshold_expression I>2\s(I) _[local]_cod_data_source_file gd1287.cif _[local]_cod_data_source_block I _cod_depositor_comments ; The following automatic conversions were performed: '_symmetry_cell_setting' value 'Triclinic' changed to 'triclinic' according to '/home/saulius/struct/CIF-dictionaries/cif_core.dic' dictionary named 'cif_core.dic' version 2.4.1 from 2010-06-29. Automatic conversion script Id: cif_fix_enum 1527 2010-12-29 10:47:43Z saulius The following automatic conversions were performed: '_symmetry_cell_setting' value 'Triclinic' changed to 'triclinic' according to /home/saulius/struct/CIF-dictionaries/cif_core.dic dictionary named 'cif_core.dic' version 2.4.1 from 2010-06-29. Automatic conversion script Id: cif_fix_values 1715 2011-07-08 13:25:40Z adriana The following automatic conversions were performed: '_exptl_crystal_density_meas' value 'not measured' was changed to '?' - the value is perceived as not measured. Automatic conversion script Id: cif_fix_values 3008 2015-01-20 13:52:24Z robertas ; _cod_database_code 2013789 _cod_database_fobs_code 2013789 loop_ _symmetry_equiv_pos_as_xyz 'x, y, z' '-x, -y, -z' loop_ _atom_site_label _atom_site_fract_x _atom_site_fract_y _atom_site_fract_z _atom_site_U_iso_or_equiv _atom_site_adp_type _atom_site_calc_flag _atom_site_refinement_flags _atom_site_occupancy _atom_site_disorder_assembly _atom_site_disorder_group _atom_site_type_symbol O1 0.18351(13) 0.57366(14) 0.70809(10) 0.0684(3) Uani d . 1 . . O O2 0.38764(12) 0.57975(12) 0.83449(9) 0.0532(3) Uani d . 1 . . O O3 0.25088(13) 0.14710(15) 0.16841(10) 0.0673(3) Uani d . 1 . . O N1 0.37007(13) 0.43482(13) 0.64714(10) 0.0455(3) Uani d . 1 . . N C1 0.67422(16) 0.20729(17) 0.54329(13) 0.0497(3) Uani d . 1 . . C C2 0.78016(17) 0.22680(18) 0.65333(13) 0.0518(4) Uani d . 1 . . C C3 0.91578(16) 0.14424(17) 0.62986(13) 0.0490(3) Uani d . 1 . . C C4 1.02222(19) 0.1643(2) 0.73931(14) 0.0601(4) Uani d . 1 . . C C5 1.1590(2) 0.0842(2) 0.71528(17) 0.0708(5) Uani d . 1 . . C C6 0.30237(17) 0.53506(16) 0.73022(13) 0.0487(3) Uani d . 1 . . C C7 0.33847(18) 0.68863(17) 0.93773(13) 0.0538(4) Uani d . 1 . . C C8 0.4711(2) 0.7175(2) 1.03145(15) 0.0727(5) Uani d . 1 . . C C9 0.3223(2) 0.8400(2) 0.90901(16) 0.0707(5) Uani d . 1 . . C C10 0.1937(2) 0.6085(2) 0.97243(18) 0.0834(6) Uani d . 1 . . C C11 0.31383(15) 0.37091(15) 0.52707(12) 0.0430(3) Uani d . 1 . . C C12 0.41810(15) 0.27905(15) 0.47337(12) 0.0422(3) Uani d . 1 . . C C13 0.39325(16) 0.20448(16) 0.35256(12) 0.0479(3) Uani d . 1 . . C C14 0.26678(16) 0.22288(17) 0.28829(13) 0.0498(3) Uani d . 1 . . C C15 0.16288(16) 0.31148(17) 0.34293(14) 0.0521(4) Uani d . 1 . . C C16 0.18555(16) 0.38630(17) 0.46320(13) 0.0496(3) Uani d . 1 . . C C1A 0.50678(15) 0.38203(16) 0.66506(12) 0.0461(3) Uani d . 1 . . C C2A 0.53905(15) 0.28740(16) 0.56361(12) 0.0442(3) Uani d . 1 . . C C31 0.1372(2) 0.1832(3) 0.09702(16) 0.0829(6) Uani d . 1 . . C H1A 0.7318 0.2473 0.4867 0.060 Uiso calc R 1 . . H H1B 0.6381 0.0965 0.5078 0.060 Uiso calc R 1 . . H H2A 0.7231 0.1866 0.7100 0.062 Uiso calc R 1 . . H H2B 0.8170 0.3374 0.6889 0.062 Uiso calc R 1 . . H H3A 0.8788 0.0336 0.5947 0.059 Uiso calc R 1 . . H H3B 0.9724 0.1840 0.5727 0.059 Uiso calc R 1 . . H H4A 0.9661 0.1227 0.7959 0.072 Uiso calc R 1 . . H H4B 1.0577 0.2750 0.7753 0.072 Uiso calc R 1 . . H H5A 1.1251 -0.0262 0.6825 0.106 Uiso calc R 1 . . H H5B 1.2224 0.1026 0.7881 0.106 Uiso calc R 1 . . H H5C 1.2160 0.1254 0.6601 0.106 Uiso calc R 1 . . H H8A 0.4819 0.6210 1.0491 0.109 Uiso calc R 1 . . H H8B 0.4529 0.7917 1.1020 0.109 Uiso calc R 1 . . H H8C 0.5628 0.7581 1.0027 0.109 Uiso calc R 1 . . H H9A 0.4152 0.8815 0.8823 0.106 Uiso calc R 1 . . H H9B 0.3011 0.9139 0.9787 0.106 Uiso calc R 1 . . H H9C 0.2403 0.8209 0.8478 0.106 Uiso calc R 1 . . H H10A 0.1134 0.5891 0.9098 0.125 Uiso calc R 1 . . H H10B 0.1661 0.6745 1.0435 0.125 Uiso calc R 1 . . H H10C 0.2095 0.5111 0.9860 0.125 Uiso calc R 1 . . H H13 0.4608 0.1432 0.3158 0.058 Uiso calc R 1 . . H H15 0.0773 0.3205 0.2981 0.063 Uiso calc R 1 . . H H16 0.1162 0.4452 0.4998 0.060 Uiso calc R 1 . . H H1A1 0.5669 0.4086 0.7371 0.055 Uiso calc R 1 . . H H31A 0.0389 0.1477 0.1188 0.124 Uiso calc R 1 . . H H31B 0.1436 0.1322 0.0153 0.124 Uiso calc R 1 . . H H31C 0.1517 0.2942 0.1083 0.124 Uiso calc R 1 . . H loop_ _atom_site_aniso_label _atom_site_aniso_U_11 _atom_site_aniso_U_22 _atom_site_aniso_U_33 _atom_site_aniso_U_12 _atom_site_aniso_U_13 _atom_site_aniso_U_23 O1 0.0610(7) 0.0837(8) 0.0620(7) 0.0416(6) 0.0078(5) 0.0050(6) O2 0.0623(6) 0.0568(6) 0.0441(6) 0.0302(5) 0.0112(5) 0.0074(4) O3 0.0660(7) 0.0849(8) 0.0471(6) 0.0251(6) -0.0019(5) 0.0055(5) N1 0.0458(6) 0.0501(6) 0.0436(6) 0.0199(5) 0.0085(5) 0.0105(5) C1 0.0482(8) 0.0571(8) 0.0477(8) 0.0238(6) 0.0096(6) 0.0117(6) C2 0.0517(8) 0.0563(8) 0.0503(8) 0.0230(7) 0.0076(6) 0.0112(6) C3 0.0461(7) 0.0553(8) 0.0498(8) 0.0188(6) 0.0075(6) 0.0151(6) C4 0.0589(9) 0.0654(10) 0.0558(9) 0.0215(8) 0.0004(7) 0.0111(7) C5 0.0579(10) 0.0847(12) 0.0751(12) 0.0270(9) -0.0025(8) 0.0247(10) C6 0.0517(8) 0.0485(7) 0.0497(8) 0.0200(6) 0.0118(6) 0.0121(6) C7 0.0653(9) 0.0509(8) 0.0485(8) 0.0256(7) 0.0179(7) 0.0076(6) C8 0.0936(13) 0.0735(11) 0.0513(9) 0.0357(10) 0.0048(9) 0.0059(8) C9 0.0901(13) 0.0541(9) 0.0706(11) 0.0311(9) 0.0104(9) 0.0106(8) C10 0.0931(14) 0.0822(13) 0.0733(12) 0.0135(11) 0.0406(11) 0.0124(10) C11 0.0431(7) 0.0436(7) 0.0457(7) 0.0125(6) 0.0103(6) 0.0138(6) C12 0.0402(7) 0.0444(7) 0.0460(7) 0.0126(5) 0.0096(6) 0.0150(6) C13 0.0468(7) 0.0511(8) 0.0480(8) 0.0159(6) 0.0108(6) 0.0116(6) C14 0.0486(8) 0.0531(8) 0.0464(8) 0.0089(6) 0.0043(6) 0.0116(6) C15 0.0433(7) 0.0580(9) 0.0561(9) 0.0125(6) 0.0001(6) 0.0164(7) C16 0.0438(7) 0.0523(8) 0.0564(9) 0.0170(6) 0.0103(6) 0.0148(7) C1A 0.0462(7) 0.0516(8) 0.0450(7) 0.0194(6) 0.0078(6) 0.0143(6) C2A 0.0445(7) 0.0471(7) 0.0453(7) 0.0160(6) 0.0096(6) 0.0144(6) C31 0.0771(12) 0.1139(16) 0.0556(11) 0.0325(11) -0.0078(9) 0.0129(10) loop_ _atom_type_symbol _atom_type_description _atom_type_scat_dispersion_real _atom_type_scat_dispersion_imag _atom_type_scat_source C C 0.0033 0.0016 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' H H 0.0000 0.0000 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' N N 0.0061 0.0033 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' O O 0.0106 0.0060 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' loop_ _diffrn_standard_refln_index_h _diffrn_standard_refln_index_k _diffrn_standard_refln_index_l 2 4 2 0 0 -5 -1 -2 7 -5 -1 4 loop_ _geom_angle_atom_site_label_1 _geom_angle_atom_site_label_2 _geom_angle_atom_site_label_3 _geom_angle _geom_angle_publ_flag C6 O2 C7 120.16(11) yes C14 O3 C31 116.97(13) yes C6 N1 C1A 127.03(12) yes C6 N1 C11 125.12(11) yes C1A N1 C11 107.83(11) yes C2 C1 C2A 114.98(12) ? C1 C2 C3 113.71(12) ? C2 C3 C4 113.86(12) ? C3 C4 C5 113.75(14) ? O1 C6 O2 126.73(13) yes O1 C6 N1 123.03(14) yes O2 C6 N1 110.24(12) yes O2 C7 C8 102.60(12) no O2 C7 C9 109.89(12) no O2 C7 C10 108.92(13) no C9 C7 C10 113.28(15) no C9 C7 C8 109.58(14) no C8 C7 C10 112.03(15) no N1 C11 C12 106.87(11) yes N1 C11 C16 131.59(12) yes C12 C11 C16 121.54(13) no C11 C12 C2A 107.87(12) yes C13 C12 C2A 132.65(12) yes O3 C14 C13 115.60(13) yes O3 C14 C15 123.34(13) yes C11 C12 C13 119.46(13) ? C12 C13 C14 118.92(13) ? C13 C14 C15 121.05(14) ? C14 C15 C16 120.83(14) ? C11 C16 C15 118.17(13) ? C2A C1A N1 110.69(12) yes C1A C2A C12 106.73(11) yes C1A C2A C1 128.14(13) yes C12 C2A C1 125.11(12) yes C2A C1 H1A 108.5 ? C2 C1 H1A 108.5 ? C2A C1 H1B 108.5 ? C2 C1 H1B 108.5 ? H1A C1 H1B 107.5 ? C1 C2 H2A 108.8 ? C3 C2 H2A 108.8 ? C1 C2 H2B 108.8 ? C3 C2 H2B 108.8 ? H2A C2 H2B 107.7 ? C4 C3 H3A 108.8 ? C2 C3 H3A 108.8 ? C4 C3 H3B 108.8 ? C2 C3 H3B 108.8 ? H3A C3 H3B 107.7 ? C3 C4 H4A 108.8 ? C5 C4 H4A 108.8 ? C3 C4 H4B 108.8 ? C5 C4 H4B 108.8 ? H4A C4 H4B 107.7 ? C4 C5 H5A 109.5 ? C4 C5 H5B 109.5 ? H5A C5 H5B 109.5 ? C4 C5 H5C 109.5 ? H5A C5 H5C 109.5 ? H5B C5 H5C 109.5 ? C7 C8 H8A 109.5 ? C7 C8 H8B 109.5 ? H8A C8 H8B 109.5 ? C7 C8 H8C 109.5 ? H8A C8 H8C 109.5 ? H8B C8 H8C 109.5 ? C7 C9 H9A 109.5 ? C7 C9 H9B 109.5 ? H9A C9 H9B 109.5 ? C7 C9 H9C 109.5 ? H9A C9 H9C 109.5 ? H9B C9 H9C 109.5 ? C7 C10 H10A 109.5 ? C7 C10 H10B 109.5 ? H10A C10 H10B 109.5 ? C7 C10 H10C 109.5 ? H10A C10 H10C 109.5 ? H10B C10 H10C 109.5 ? C14 C13 H13 120.5 ? C12 C13 H13 120.5 ? C16 C15 H15 119.6 ? C14 C15 H15 119.6 ? C11 C16 H16 120.9 ? C15 C16 H16 120.9 ? C2A C1A H1A1 124.7 ? N1 C1A H1A1 124.7 ? O3 C31 H31A 109.5 ? O3 C31 H31B 109.5 ? H31A C31 H31B 109.5 ? H31A C31 H31C 109.5 ? H31B C31 H31C 109.5 ? O3 C31 H31C 109.5 ? loop_ _geom_bond_atom_site_label_1 _geom_bond_atom_site_label_2 _geom_bond_site_symmetry_2 _geom_bond_distance _geom_bond_publ_flag O1 C6 . 1.2029(17) yes O2 C6 . 1.3365(18) yes O2 C7 . 1.4838(16) yes O3 C14 . 1.3846(18) yes O3 C31 . 1.410(2) yes N1 C6 . 1.3829(17) yes N1 C11 . 1.4076(18) yes N1 C1A . 1.4022(16) yes C1 C2A . 1.5001(18) yes C1A C2A . 1.3481(19) yes C1 C2 . 1.513(2) no C2 C3 . 1.5195(19) no C3 C4 . 1.509(2) no C4 C5 . 1.517(2) no C7 C8 . 1.515(2) no C7 C9 . 1.511(2) no C7 C10 . 1.512(2) no C11 C12 . 1.4090(18) yes C11 C16 . 1.3792(19) no C12 C2A . 1.4496(19) yes C12 C13 . 1.392(2) no C13 C14 . 1.379(2) no C14 C15 . 1.394(2) no C15 C16 . 1.386(2) no C1 H1A . 0.9700 ? C1 H1B . 0.9700 ? C2 H2A . 0.9700 ? C2 H2B . 0.9700 ? C3 H3A . 0.9700 ? C3 H3B . 0.9700 ? C4 H4A . 0.9700 ? C4 H4B . 0.9700 ? C5 H5A . 0.9600 ? C5 H5B . 0.9600 ? C5 H5C . 0.9600 ? C8 H8A . 0.9600 ? C8 H8B . 0.9600 ? C8 H8C . 0.9600 ? C9 H9A . 0.9600 ? C9 H9B . 0.9600 ? C9 H9C . 0.9600 ? C10 H10A . 0.9600 ? C10 H10B . 0.9600 ? C10 H10C . 0.9600 ? C13 H13 . 0.9300 ? C15 H15 . 0.9300 ? C16 H16 . 0.9300 ? C1A H1A1 . 0.9300 ? C31 H31A . 0.9600 ? C31 H31B . 0.9600 ? C31 H31C . 0.9600 ? loop_ _geom_hbond_atom_site_label_D _geom_hbond_atom_site_label_H _geom_hbond_atom_site_label_A _geom_hbond_site_symmetry_A _geom_hbond_distance_DH _geom_hbond_distance_HA _geom_hbond_distance_DA _geom_hbond_angle_DHA _geom_hbond_publ_flag C9 H9C O1 1_555 0.96 2.36 2.944(2) 119 yes C10 H10A O1 1_555 0.96 2.46 3.033(2) 118 yes C16 H16 O1 1_555 0.93 2.42 2.9356(19) 115 yes loop_ _geom_torsion_atom_site_label_1 _geom_torsion_atom_site_label_2 _geom_torsion_atom_site_label_3 _geom_torsion_atom_site_label_4 _geom_torsion _geom_torsion_publ_flag C7 O2 C6 O1 -0.3(2) yes C31 O3 C14 C15 10.4(2) yes C11 N1 C6 O1 2.7(2) yes C2 C1 C2A C1A 5.0(2) yes C2A C1 C2 C3 179.95(13) ? C1 C2 C3 C4 179.65(13) ? C2 C3 C4 C5 -178.95(15) ? C7 O2 C6 N1 179.68(12) ? C1A N1 C6 O1 -179.17(14) ? C1A N1 C6 O2 0.9(2) ? C11 N1 C6 O2 -177.26(12) ? C6 O2 C7 C9 -59.04(18) ? C6 O2 C7 C10 65.59(18) ? C6 O2 C7 C8 -175.53(13) ? C6 N1 C11 C16 -0.9(2) ? C1A N1 C11 C16 -179.34(14) ? C6 N1 C11 C12 178.56(13) ? C1A N1 C11 C12 0.12(15) ? C16 C11 C12 C13 1.4(2) ? N1 C11 C12 C13 -178.17(12) ? C16 C11 C12 C2A 179.90(12) ? N1 C11 C12 C2A 0.37(15) ? C11 C12 C13 C14 0.1(2) ? C2A C12 C13 C14 -177.98(14) ? C12 C13 C14 O3 179.09(12) ? C12 C13 C14 C15 -1.5(2) ? C31 O3 C14 C13 -170.20(15) ? C13 C14 C15 C16 1.3(2) ? O3 C14 C15 C16 -179.26(14) ? N1 C11 C16 C15 177.91(14) ? C12 C11 C16 C15 -1.5(2) ? C14 C15 C16 C11 0.2(2) ? C6 N1 C1A C2A -179.01(13) ? C11 N1 C1A C2A -0.62(16) ? N1 C1A C2A C12 0.84(16) ? N1 C1A C2A C1 179.41(13) ? C13 C12 C2A C1A 177.53(15) ? C11 C12 C2A C1A -0.75(15) ? C13 C12 C2A C1 -1.1(2) ? C11 C12 C2A C1 -179.38(13) ? C2 C1 C2A C12 -176.70(13) ?