#------------------------------------------------------------------------------ #$Date: 2016-02-20 00:18:51 +0200 (Sat, 20 Feb 2016) $ #$Revision: 176760 $ #$URL: file:///home/coder/svn-repositories/cod/cif/2/01/44/2014416.cif $ #------------------------------------------------------------------------------ # # This file is available in the Crystallography Open Database (COD), # http://www.crystallography.net/. The original data for this entry # were provided by IUCr Journals, http://journals.iucr.org/. # # The file may be used within the scientific community so long as # proper attribution is given to the journal article from which the # data were obtained. # data_2014416 loop_ _publ_author_name 'Zhang, Xiaomei' 'Budow, Simone' 'Leonard, Peter' 'Eickmeier, Henning' 'Seela, Frank' _publ_section_title ; N^8^-(2'-O-Methylribofuranosyl)-8-aza-7-deazaadenine monohydrate ; _journal_coeditor_code TR1128 _journal_issue 2 _journal_name_full 'Acta Crystallographica Section C' _journal_page_first o79 _journal_page_last o81 _journal_paper_doi 10.1107/S0108270105041983 _journal_volume 62 _journal_year 2006 _chemical_formula_iupac 'C11 H15 N5 O4, H2 O' _chemical_formula_moiety 'C11 H15 N5 O4, H2 O' _chemical_formula_sum 'C11 H17 N5 O5' _chemical_formula_weight 299.30 _chemical_name_systematic ; 4-amino-2-(2-O-methyl-\b-D-ribofuranosyl)-2H-pyrazolo[3,4-d]pyrimidine monohydrate ; _space_group_IT_number 5 _symmetry_cell_setting monoclinic _symmetry_space_group_name_Hall 'C 2y' _symmetry_space_group_name_H-M 'C 1 2 1' _atom_sites_solution_hydrogens geom _atom_sites_solution_primary direct _atom_sites_solution_secondary difmap _audit_creation_method SHELXL-97 _cell_angle_alpha 90.00 _cell_angle_beta 93.128(8) _cell_angle_gamma 90.00 _cell_formula_units_Z 4 _cell_length_a 17.263(2) _cell_length_b 7.5673(7) _cell_length_c 10.4757(8) _cell_measurement_reflns_used 42 _cell_measurement_temperature 293(2) _cell_measurement_theta_max 12.51 _cell_measurement_theta_min 4.84 _cell_volume 1366.4(2) _computing_cell_refinement XSCANS _computing_data_collection 'XSCANS (Siemens, 1996)' _computing_data_reduction 'SHELXTL (Sheldrick, 1997)' _computing_molecular_graphics SHELXTL _computing_publication_material 'SHELXTL and PLATON (Spek, 1999)' _computing_structure_refinement SHELXTL _computing_structure_solution SHELXTL _diffrn_ambient_temperature 293(2) _diffrn_measured_fraction_theta_full 0.996 _diffrn_measured_fraction_theta_max 0.996 _diffrn_measurement_device_type 'Bruker P4' _diffrn_measurement_method 2\q/\w _diffrn_radiation_monochromator graphite _diffrn_radiation_source 'fine-focus sealed tube' _diffrn_radiation_type MoK\a _diffrn_radiation_wavelength 0.71073 _diffrn_reflns_av_R_equivalents 0.0179 _diffrn_reflns_av_sigmaI/netI 0.0223 _diffrn_reflns_limit_h_max 24 _diffrn_reflns_limit_h_min -1 _diffrn_reflns_limit_k_max 1 _diffrn_reflns_limit_k_min -10 _diffrn_reflns_limit_l_max 15 _diffrn_reflns_limit_l_min -15 _diffrn_reflns_number 2836 _diffrn_reflns_theta_full 31.00 _diffrn_reflns_theta_max 31.00 _diffrn_reflns_theta_min 1.95 _diffrn_standards_decay_% 0 _diffrn_standards_interval_count 97 _diffrn_standards_number 3 _exptl_absorpt_coefficient_mu 0.116 _exptl_absorpt_correction_type none _exptl_crystal_colour colourless _exptl_crystal_density_diffrn 1.455 _exptl_crystal_density_method 'not measured' _exptl_crystal_description block _exptl_crystal_F_000 632 _exptl_crystal_size_max 0.54 _exptl_crystal_size_mid 0.4 _exptl_crystal_size_min 0.3 _refine_diff_density_max 0.292 _refine_diff_density_min -0.162 _refine_ls_extinction_method none _refine_ls_goodness_of_fit_ref 1.004 _refine_ls_hydrogen_treatment mixed _refine_ls_matrix_type full _refine_ls_number_parameters 201 _refine_ls_number_reflns 2318 _refine_ls_number_restraints 4 _refine_ls_restrained_S_all 1.003 _refine_ls_R_factor_all 0.0371 _refine_ls_R_factor_gt 0.0359 _refine_ls_shift/su_max 0.000 _refine_ls_shift/su_mean 0.000 _refine_ls_structure_factor_coef Fsqd _refine_ls_weighting_details 'calc w=1/[\s^2^(Fo^2^)+(0.0802P)^2^+0.1324P] where P=(Fo^2^+2Fc^2^)/3' _refine_ls_weighting_scheme calc _refine_ls_wR_factor_gt 0.1064 _refine_ls_wR_factor_ref 0.1077 _reflns_number_gt 2225 _reflns_number_total 2318 _reflns_threshold_expression I>2/s(I) _cod_data_source_file tr1128.cif _cod_data_source_block I _cod_depositor_comments ; The following automatic conversions were performed: '_symmetry_cell_setting' value 'Monoclinic' changed to 'monoclinic' according to '/home/saulius/struct/CIF-dictionaries/cif_core.dic' dictionary named 'cif_core.dic' version 2.4.1 from 2010-06-29. '_geom_bond_publ_flag' value 'N' changed to 'n' according to '/home/saulius/struct/CIF-dictionaries/cif_core.dic' dictionary named 'cif_core.dic' version 2.4.1 from 2010-06-29 (35 times). '_geom_bond_publ_flag' value 'Y' changed to 'y' according to '/home/saulius/struct/CIF-dictionaries/cif_core.dic' dictionary named 'cif_core.dic' version 2.4.1 from 2010-06-29 (4 times). Automatic conversion script Id: cif_fix_enum 1527 2010-12-29 10:47:43Z saulius The following automatic conversions were performed: '_symmetry_cell_setting' value 'Monoclinic' changed to 'monoclinic' according to /home/saulius/struct/CIF-dictionaries/cif_core.dic dictionary named 'cif_core.dic' version 2.4.1 from 2010-06-29. '_geom_bond_publ_flag' value 'N' changed to 'n' according to /home/saulius/struct/CIF-dictionaries/cif_core.dic dictionary named 'cif_core.dic' version 2.4.1 from 2010-06-29 (35 times). '_geom_bond_publ_flag' value 'Y' changed to 'y' according to /home/saulius/struct/CIF-dictionaries/cif_core.dic dictionary named 'cif_core.dic' version 2.4.1 from 2010-06-29 (4 times). '_geom_angle_publ_flag' value 'N' changed to 'n' according to /home/saulius/struct/CIF-dictionaries/cif_core.dic dictionary named 'cif_core.dic' version 2.4.1 from 2010-06-29 (59 times). '_geom_angle_publ_flag' value 'Y' changed to 'y' according to /home/saulius/struct/CIF-dictionaries/cif_core.dic dictionary named 'cif_core.dic' version 2.4.1 from 2010-06-29 (6 times). '_geom_torsion_publ_flag' value 'N' changed to 'n' according to /home/saulius/struct/CIF-dictionaries/cif_core.dic dictionary named 'cif_core.dic' version 2.4.1 from 2010-06-29 (37 times). '_geom_torsion_publ_flag' value 'Y' changed to 'y' according to /home/saulius/struct/CIF-dictionaries/cif_core.dic dictionary named 'cif_core.dic' version 2.4.1 from 2010-06-29 (9 times). Automatic conversion script Id: cif_fix_values 1715 2011-07-08 13:25:40Z adriana ; _cod_original_sg_symbol_H-M 'C 2' _cod_database_code 2014416 _cod_database_fobs_code 2014416 loop_ _symmetry_equiv_pos_as_xyz 'x, y, z' '-x, y, -z' 'x+1/2, y+1/2, z' '-x+1/2, y+1/2, -z' loop_ _atom_site_label _atom_site_fract_x _atom_site_fract_y _atom_site_fract_z _atom_site_U_iso_or_equiv _atom_site_adp_type _atom_site_calc_flag _atom_site_refinement_flags _atom_site_occupancy _atom_site_disorder_assembly _atom_site_disorder_group _atom_site_type_symbol N1 0.39800(7) 0.6512(2) 0.44054(12) 0.0372(3) Uani d . 1 . . N C2 0.33762(9) 0.6695(2) 0.35419(13) 0.0375(3) Uani d . 1 . . C H2 0.3503 0.6630 0.2692 0.045 Uiso calc R 1 . . H N3 0.26362(8) 0.6953(2) 0.37155(11) 0.0385(3) Uani d . 1 . . N C4 0.24802(9) 0.6997(2) 0.49826(13) 0.0325(3) Uani d . 1 . . C C5 0.30550(7) 0.6797(2) 0.59851(12) 0.0310(3) Uani d . 1 . . C C6 0.38344(8) 0.6554(2) 0.56538(13) 0.0343(3) Uani d . 1 . . C N6 0.44266(8) 0.6404(3) 0.65129(14) 0.0481(4) Uani d . 1 . . N H6A 0.4891 0.6283 0.6266 0.058 Uiso calc R 1 . . H H6B 0.4346 0.6427 0.7315 0.058 Uiso calc R 1 . . H C7 0.26568(8) 0.6964(2) 0.70996(12) 0.0343(3) Uani d . 1 . . C H7A 0.2863 0.6906 0.7938 0.041 Uiso calc R 1 . . H N8 0.19129(6) 0.7226(2) 0.67070(11) 0.0325(2) Uani d . 1 . . N N9 0.17754(7) 0.7260(2) 0.54209(11) 0.0369(3) Uani d . 1 . . N C1' 0.12367(8) 0.7428(2) 0.74915(12) 0.0317(3) Uani d . 1 . . C H1' 0.0893 0.8349 0.7125 0.038 Uiso calc R 1 . . H C2' 0.07852(8) 0.5693(2) 0.75991(14) 0.0347(3) Uani d . 1 . . C H2' 0.0842 0.4917 0.6861 0.042 Uiso calc R 1 . . H O2' 0.00028(6) 0.6043(2) 0.78236(12) 0.0446(3) Uani d . 1 . . O C2'O -0.04690(10) 0.6348(4) 0.66917(19) 0.0540(5) Uani d . 1 . . C H2'1 -0.0260 0.7314 0.6226 0.081 Uiso calc R 1 . . H H2'2 -0.0987 0.6633 0.6914 0.081 Uiso calc R 1 . . H H2'3 -0.0480 0.5304 0.6171 0.081 Uiso calc R 1 . . H C3' 0.11598(9) 0.4924(2) 0.88289(15) 0.0370(3) Uani d . 1 . . C H3'1 0.1663 0.4410 0.8648 0.044 Uiso calc R 1 . . H O3' 0.07012(10) 0.3626(2) 0.93787(19) 0.0600(4) Uani d D 1 . . O H3' 0.0978(18) 0.352(7) 1.002(2) 0.090 Uiso d D 1 . . H C4' 0.12912(8) 0.6576(2) 0.96354(13) 0.0338(3) Uani d . 1 . . C H4' 0.0804 0.6913 1.0006 0.041 Uiso calc R 1 . . H O4' 0.15030(7) 0.79132(17) 0.87390(10) 0.0365(2) Uani d . 1 . . O C5' 0.19197(10) 0.6434(3) 1.06849(16) 0.0455(4) Uani d . 1 . . C H5'1 0.1810 0.5452 1.1242 0.055 Uiso calc R 1 . . H H5'2 0.2414 0.6215 1.0318 0.055 Uiso calc R 1 . . H O5' 0.19587(8) 0.8025(2) 1.14011(12) 0.0493(3) Uani d . 1 . . O H5' 0.2174 0.7836 1.2105 0.074 Uiso calc R 1 . . H O10 0.07920(16) 0.0607(3) 1.07967(19) 0.0786(6) Uani d D 1 . . O H10A 0.068(3) 0.070(9) 0.9897(13) 0.118 Uiso d D 1 . . H H10B 0.116(2) -0.028(5) 1.110(4) 0.118 Uiso d D 1 . . H loop_ _atom_site_aniso_label _atom_site_aniso_U_11 _atom_site_aniso_U_22 _atom_site_aniso_U_33 _atom_site_aniso_U_12 _atom_site_aniso_U_13 _atom_site_aniso_U_23 N1 0.0281(5) 0.0511(7) 0.0328(5) 0.0004(5) 0.0066(4) 0.0034(5) C2 0.0355(7) 0.0487(8) 0.0287(5) 0.0006(6) 0.0064(5) 0.0015(6) N3 0.0322(5) 0.0578(8) 0.0257(5) 0.0021(6) 0.0019(4) 0.0020(5) C4 0.0270(5) 0.0438(7) 0.0267(5) -0.0005(5) 0.0014(4) 0.0009(5) C5 0.0225(5) 0.0438(7) 0.0268(5) 0.0000(5) 0.0021(4) 0.0021(5) C6 0.0251(5) 0.0456(8) 0.0322(6) -0.0007(5) 0.0035(4) 0.0039(6) N6 0.0249(5) 0.0845(12) 0.0348(6) 0.0026(7) 0.0022(4) 0.0034(7) C7 0.0247(5) 0.0508(8) 0.0274(5) 0.0007(5) 0.0012(4) 0.0033(6) N8 0.0232(5) 0.0478(7) 0.0266(5) 0.0014(5) 0.0024(4) 0.0025(5) N9 0.0258(5) 0.0579(8) 0.0269(5) 0.0028(5) 0.0001(4) 0.0017(5) C1' 0.0259(5) 0.0419(7) 0.0276(5) 0.0031(5) 0.0041(4) 0.0004(5) C2' 0.0244(5) 0.0452(8) 0.0348(6) 0.0004(5) 0.0038(4) -0.0037(6) O2' 0.0221(4) 0.0719(9) 0.0400(5) 0.0015(5) 0.0035(4) 0.0039(6) C2'O 0.0306(7) 0.0834(15) 0.0472(9) 0.0015(9) -0.0044(6) 0.0038(10) C3' 0.0306(6) 0.0393(7) 0.0414(7) 0.0022(5) 0.0055(5) 0.0038(6) O3' 0.0558(8) 0.0524(8) 0.0724(10) -0.0076(7) 0.0096(7) 0.0214(8) C4' 0.0284(5) 0.0448(7) 0.0285(5) 0.0048(5) 0.0046(4) 0.0021(5) O4' 0.0402(5) 0.0412(5) 0.0284(4) -0.0040(5) 0.0041(4) -0.0022(4) C5' 0.0396(7) 0.0615(11) 0.0349(6) 0.0105(8) -0.0032(5) 0.0019(7) O5' 0.0515(7) 0.0621(8) 0.0332(5) 0.0013(7) -0.0080(4) 0.0023(6) O10 0.1197(18) 0.0606(10) 0.0554(9) 0.0317(12) 0.0059(10) 0.0026(8) loop_ _atom_type_symbol _atom_type_description _atom_type_scat_dispersion_real _atom_type_scat_dispersion_imag _atom_type_scat_source C C 0.0033 0.0000 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' H H 0.0000 0.0000 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' N N 0.0061 0.0000 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' O O 0.0106 0.0000 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' loop_ _geom_angle_atom_site_label_1 _geom_angle_atom_site_label_2 _geom_angle_atom_site_label_3 _geom_angle _geom_angle_publ_flag C6 N1 C2 118.08(12) n N3 C2 N1 130.04(13) n N3 C2 H2 115.0 n N1 C2 H2 115.0 n C2 N3 C4 112.44(13) n N9 C4 N3 124.51(13) n N9 C4 C5 112.06(12) n N3 C4 C5 123.42(13) n C7 C5 C4 104.75(12) n C7 C5 C6 137.27(12) n C4 C5 C6 117.94(12) n N6 C6 N1 118.58(13) y N6 C6 C5 123.34(13) y N1 C6 C5 118.07(12) n C6 N6 H6A 120.0 n C6 N6 H6B 120.0 n H6A N6 H6B 120.0 n N8 C7 C5 105.34(12) n N8 C7 H7A 127.3 n C5 C7 H7A 127.3 n C7 N8 N9 114.85(11) y C7 N8 C1' 128.26(12) y N9 N8 C1' 116.86(11) y C4 N9 N8 103.00(11) n O4' C1' N8 108.43(11) n O4' C1' C2' 107.21(11) n N8 C1' C2' 111.94(12) n O4' C1' H1' 109.7 n N8 C1' H1' 109.7 n C2' C1' H1' 109.7 n O2' C2' C3' 107.26(12) n O2' C2' C1' 110.31(14) n C3' C2' C1' 101.25(12) n O2' C2' H2' 112.5 n C3' C2' H2' 112.5 n C1' C2' H2' 112.5 n C2' O2' C2'O 113.74(13) y O2' C2'O H2'1 109.5 n O2' C2'O H2'2 109.5 n H2'1 C2'O H2'2 109.5 n O2' C2'O H2'3 109.5 n H2'1 C2'O H2'3 109.5 n H2'2 C2'O H2'3 109.5 n O3' C3' C4' 114.71(15) n O3' C3' C2' 113.02(14) n C4' C3' C2' 101.50(13) n O3' C3' H3'1 109.1 n C4' C3' H3'1 109.1 n C2' C3' H3'1 109.1 n C3' O3' H3' 95(3) n O4' C4' C5' 109.11(14) n O4' C4' C3' 104.53(11) n C5' C4' C3' 115.30(14) n O4' C4' H4' 109.2 n C5' C4' H4' 109.2 n C3' C4' H4' 109.2 n C1' O4' C4' 109.86(12) n O5' C5' C4' 109.71(15) n O5' C5' H5'1 109.7 n C4' C5' H5'1 109.7 n O5' C5' H5'2 109.7 n C4' C5' H5'2 109.7 n H5'1 C5' H5'2 108.2 n C5' O5' H5' 109.5 n H10A O10 H10B 118(4) n loop_ _geom_bond_atom_site_label_1 _geom_bond_atom_site_label_2 _geom_bond_site_symmetry_2 _geom_bond_distance _geom_bond_publ_flag N1 C6 . 1.3455(18) n N1 C2 . 1.349(2) n C2 N3 . 1.315(2) n C2 H2 . 0.9300 n N3 C4 . 1.3691(18) n C4 N9 . 1.3386(19) n C4 C5 . 1.4130(19) n C5 C7 . 1.3925(17) n C5 C6 . 1.4196(17) n C6 N6 . 1.3295(19) n N6 H6A . 0.8600 n N6 H6B . 0.8600 n C7 N8 . 1.3416(17) n C7 H7A . 0.9300 n N8 N9 . 1.3555(15) y N8 C1' . 1.4718(17) y C1' O4' . 1.4101(17) n C1' C2' . 1.534(2) n C1' H1' . 0.9800 n C2' O2' . 1.4086(17) y C2' C3' . 1.525(2) n C2' H2' . 0.9800 n O2' C2'O . 1.420(2) y C2'O H2'1 . 0.9600 n C2'O H2'2 . 0.9600 n C2'O H2'3 . 0.9600 n C3' O3' . 1.405(2) n C3' C4' . 1.519(2) n C3' H3'1 . 0.9800 n O3' H3' . 0.806(10) n C4' O4' . 1.4412(19) n C4' C5' . 1.506(2) n C4' H4' . 0.9800 n C5' O5' . 1.418(3) n C5' H5'1 . 0.9700 n C5' H5'2 . 0.9700 n O5' H5' . 0.8200 n O10 H10A . 0.954(10) n O10 H10B . 0.97(4) n loop_ _geom_hbond_atom_site_label_D _geom_hbond_atom_site_label_H _geom_hbond_atom_site_label_A _geom_hbond_site_symmetry_A _geom_hbond_distance_DH _geom_hbond_distance_HA _geom_hbond_distance_DA _geom_hbond_angle_DHA N6 H6A N1 2_656 0.86 2.12 2.964(2) 169 N6 H6B O10 4_557 0.86 2.10 2.927(2) 161 O3' H3' O10 . 0.810(10) 2.38(5) 2.724(3) 107(4) O5' H5' N3 1_556 0.82 1.95 2.756(2) 170 O10 H10A O10 2_557 0.960(10) 2.61(4) 3.125(5) 115(3) O10 H10B O5' 1_545 0.97(4) 1.90(4) 2.852(3) 169(4) loop_ _geom_torsion_atom_site_label_1 _geom_torsion_atom_site_label_2 _geom_torsion_atom_site_label_3 _geom_torsion_atom_site_label_4 _geom_torsion _geom_torsion_publ_flag C6 N1 C2 N3 1.5(3) n N1 C2 N3 C4 -1.5(3) n C2 N3 C4 N9 179.22(18) n C2 N3 C4 C5 0.3(2) n N9 C4 C5 C7 -0.3(2) n N3 C4 C5 C7 178.70(17) n N9 C4 C5 C6 -178.41(16) n N3 C4 C5 C6 0.6(2) n C2 N1 C6 N6 -178.91(18) y C2 N1 C6 C5 -0.3(2) n C7 C5 C6 N6 0.6(3) y C4 C5 C6 N6 177.96(18) n C7 C5 C6 N1 -177.92(19) n C4 C5 C6 N1 -0.6(2) n C4 C5 C7 N8 0.35(18) n C6 C5 C7 N8 177.9(2) n C5 C7 N8 N9 -0.3(2) n C5 C7 N8 C1' 177.80(15) n N3 C4 N9 N8 -178.88(17) n C5 C4 N9 N8 0.11(19) n C7 N8 N9 C4 0.1(2) n C1' N8 N9 C4 -178.21(14) n C7 N8 C1' O4' 20.1(2) y N9 N8 C1' O4' -161.81(14) y C7 N8 C1' C2' -97.96(19) y N9 N8 C1' C2' 80.13(17) y O4' C1' C2' O2' 87.49(14) n N8 C1' C2' O2' -153.72(12) n O4' C1' C2' C3' -25.86(14) n N8 C1' C2' C3' 92.93(13) n C3' C2' O2' C2'O -165.21(18) n C1' C2' O2' C2'O 85.3(2) y O2' C2' C3' O3' 45.1(2) n C1' C2' C3' O3' 160.77(15) n O2' C2' C3' C4' -78.21(15) n C1' C2' C3' C4' 37.41(13) n O3' C3' C4' O4' -159.20(13) n C2' C3' C4' O4' -37.00(14) n O3' C3' C4' C5' 81.03(18) n C2' C3' C4' C5' -156.78(13) n N8 C1' O4' C4' -118.13(13) n C2' C1' O4' C4' 2.90(15) n C5' C4' O4' C1' 145.51(13) n C3' C4' O4' C1' 21.66(15) n O4' C4' C5' O5' 65.55(16) y C3' C4' C5' O5' -177.23(13) y