#------------------------------------------------------------------------------ #$Date: 2012-02-03 19:16:24 +0200 (Fri, 03 Feb 2012) $ #$Revision: 32112 $ #$URL: file:///home/coder/svn-repositories/cod/cif/2/01/53/2015381.cif $ #------------------------------------------------------------------------------ # # This file is available in the Crystallography Open Database (COD), # http://www.crystallography.net/. The original data for this entry # were provided by IUCr Journals, http://journals.iucr.org/. # # The file may be used within the scientific community so long as # proper attribution is given to the journal article from which the # data were obtained. # data_2015381 loop_ _publ_author_name 'Youngme, Sujittra' 'Phatchimkun, Jaturong' 'Chaichit, Narongsak' _publ_section_title ; Aqua(di-2-pyridylamine)oxalatocopper(II) monohydrate ; _journal_coeditor_code SF3005 _journal_issue 6 _journal_name_full 'Acta Crystallographica Section C' _journal_page_first m267 _journal_page_last m268 _journal_volume 62 _journal_year 2006 _chemical_formula_iupac '[Cu (C2 O4) (C10 H9 N3) (H2 O)], H2 O' _chemical_formula_moiety 'C12 H11 Cu N3 O5, H2 O' _chemical_formula_sum 'C12 H13 Cu N3 O6' _chemical_formula_weight 358.79 _chemical_name_systematic ; Aqua(di-2-pyridylamine)oxalatocopper(II) monohydrate ; _space_group_IT_number 14 _symmetry_cell_setting monoclinic _symmetry_space_group_name_Hall '-P 2yn' _symmetry_space_group_name_H-M 'P 1 21/n 1' _atom_sites_solution_hydrogens geom _atom_sites_solution_primary direct _atom_sites_solution_secondary difmap _audit_creation_method SHELXL-97 _cell_angle_alpha 90.00 _cell_angle_beta 103.4870(10) _cell_angle_gamma 90.00 _cell_formula_units_Z 4 _cell_length_a 9.38140(10) _cell_length_b 9.74270(10) _cell_length_c 15.5100(10) _cell_measurement_reflns_used 3924 _cell_measurement_temperature 293(2) _cell_measurement_theta_max 30.52 _cell_measurement_theta_min 2.32 _cell_volume 1378.52(9) _computing_cell_refinement 'SAINT (Bruker, 2000)' _computing_data_collection 'SMART (Bruker, 2000)' _computing_data_reduction SAINT _computing_molecular_graphics SHELXTL _computing_publication_material 'SHELXTL and PLATON (Spek, 2001)' _computing_structure_refinement SHELXTL _computing_structure_solution 'SHELXTL (Sheldrick, 2000b)' _diffrn_ambient_temperature 273(2) _diffrn_measured_fraction_theta_full 0.999 _diffrn_measured_fraction_theta_max 0.999 _diffrn_measurement_device_type 'Siemens SMART CCD area-detector' _diffrn_measurement_method \w _diffrn_radiation_monochromator graphite _diffrn_radiation_source 'fine-focus sealed tube' _diffrn_radiation_type MoK\a _diffrn_radiation_wavelength 0.71073 _diffrn_reflns_av_R_equivalents 0.0138 _diffrn_reflns_av_sigmaI/netI 0.0183 _diffrn_reflns_limit_h_max 12 _diffrn_reflns_limit_h_min -12 _diffrn_reflns_limit_k_max 13 _diffrn_reflns_limit_k_min -13 _diffrn_reflns_limit_l_max 21 _diffrn_reflns_limit_l_min -17 _diffrn_reflns_number 9853 _diffrn_reflns_theta_full 30.52 _diffrn_reflns_theta_max 30.52 _diffrn_reflns_theta_min 2.32 _diffrn_standards_decay_% 0 _diffrn_standards_interval_count 0 _diffrn_standards_interval_time 0 _diffrn_standards_number 0 _exptl_absorpt_coefficient_mu 1.619 _exptl_absorpt_correction_T_max 1.000 _exptl_absorpt_correction_T_min 0.817 _exptl_absorpt_correction_type multi-scan _exptl_absorpt_process_details '(SADABS; Sheldrick, 2000a)' _exptl_crystal_colour blue _exptl_crystal_density_diffrn 1.729 _exptl_crystal_density_meas 1.732 _exptl_crystal_density_method 'not measured' _exptl_crystal_description block _exptl_crystal_F_000 732 _exptl_crystal_size_max 0.625 _exptl_crystal_size_mid 0.475 _exptl_crystal_size_min 0.400 _refine_diff_density_max 0.375 _refine_diff_density_min -0.456 _refine_ls_extinction_method none _refine_ls_goodness_of_fit_ref 1.043 _refine_ls_hydrogen_treatment refall _refine_ls_matrix_type full _refine_ls_number_parameters 251 _refine_ls_number_reflns 3924 _refine_ls_number_restraints 0 _refine_ls_restrained_S_all 1.043 _refine_ls_R_factor_all 0.0280 _refine_ls_R_factor_gt 0.0237 _refine_ls_shift/su_max 0.000 _refine_ls_shift/su_mean 0.000 _refine_ls_structure_factor_coef Fsqd _refine_ls_weighting_details 'calc w=1/[\s^2^(Fo^2^)+(0.0444P)^2^+0.1326P] where P=(Fo^2^+2Fc^2^)/3' _refine_ls_weighting_scheme calc _refine_ls_wR_factor_gt 0.0673 _refine_ls_wR_factor_ref 0.0689 _reflns_number_gt 3456 _reflns_number_total 3924 _reflns_threshold_expression I>2\s(I) _[local]_cod_data_source_file sf3005.cif _[local]_cod_data_source_block I _[local]_cod_cif_authors_sg_H-M 'P 21/n' _cod_original_cell_volume 1378.49(2) _cod_database_code 2015381 loop_ _symmetry_equiv_pos_as_xyz 'x, y, z' '-x+1/2, y+1/2, -z+1/2' '-x, -y, -z' 'x-1/2, -y-1/2, z-1/2' loop_ _atom_type_symbol _atom_type_description _atom_type_scat_dispersion_real _atom_type_scat_dispersion_imag _atom_type_scat_source C C 0.0033 0.0016 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' H H 0.0000 0.0000 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' N N 0.0061 0.0033 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' O O 0.0106 0.0060 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' Cu Cu 0.3201 1.2651 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' loop_ _atom_site_type_symbol _atom_site_label _atom_site_fract_x _atom_site_fract_y _atom_site_fract_z _atom_site_U_iso_or_equiv _atom_site_adp_type _atom_site_calc_flag _atom_site_occupancy Cu Cu1 0.194259(17) 0.032745(14) 0.129823(10) 0.02740(6) Uani d 1 N N1 0.20965(12) 0.20204(11) 0.06121(7) 0.0278(2) Uani d 1 N N2 0.29485(11) -0.07771(11) 0.05411(7) 0.0268(2) Uani d 1 N N3 0.26091(13) 0.08545(11) -0.06236(7) 0.0302(2) Uani d 1 O O1 0.06190(12) 0.12540(10) 0.19213(8) 0.0422(2) Uani d 1 O O2 0.12187(11) -0.13385(10) 0.17672(7) 0.0347(2) Uani d 1 O O3 -0.10734(12) 0.07746(12) 0.26705(7) 0.0400(2) Uani d 1 O O4 -0.03132(12) -0.19683(10) 0.25958(7) 0.0375(2) Uani d 1 O O5 0.39935(13) 0.04477(13) 0.24357(8) 0.0399(2) Uani d 1 O O6 0.65095(13) 0.87295(13) 0.23696(9) 0.0446(3) Uani d 1 C C1 0.18551(16) 0.32420(13) 0.09846(9) 0.0332(3) Uani d 1 C C10 0.34990(15) -0.20145(13) 0.08694(8) 0.0305(2) Uani d 1 C C11 -0.01152(14) 0.04384(13) 0.22884(9) 0.0293(2) Uani d 1 C C12 0.02792(13) -0.10953(13) 0.22211(8) 0.0273(2) Uani d 1 C C2 0.17410(17) 0.44664(14) 0.05440(10) 0.0376(3) Uani d 1 C C3 0.18625(18) 0.44630(15) -0.03384(10) 0.0381(3) Uani d 1 C C4 0.21395(15) 0.32565(14) -0.07210(9) 0.0332(3) Uani d 1 C C5 0.22767(13) 0.20361(12) -0.02217(8) 0.0266(2) Uani d 1 C C6 0.30806(13) -0.04201(12) -0.02706(8) 0.0255(2) Uani d 1 C C7 0.36902(14) -0.13151(14) -0.07995(8) 0.0312(2) Uani d 1 C C8 0.42201(15) -0.25649(14) -0.04599(9) 0.0330(3) Uani d 1 C C9 0.41475(15) -0.29159(14) 0.04001(9) 0.0318(2) Uani d 1 H H1 0.174(2) 0.317(2) 0.1612(13) 0.049(5) Uiso d 1 H H10 0.3428(17) -0.2235(17) 0.1456(11) 0.031(4) Uiso d 1 H H11 0.634(3) 0.798(3) 0.2523(17) 0.077(8) Uiso d 1 H H12 0.729(3) 0.893(3) 0.2635(17) 0.073(8) Uiso d 1 H H13 0.430(2) 0.120(3) 0.2494(14) 0.057(6) Uiso d 1 H H14 0.469(3) -0.005(3) 0.2431(18) 0.074(8) Uiso d 1 H H2 0.158(2) 0.5277(18) 0.0832(13) 0.039(5) Uiso d 1 H H3 0.169(2) 0.526(2) -0.0688(15) 0.054(6) Uiso d 1 H H4 0.221(2) 0.3199(19) -0.1308(13) 0.044(5) Uiso d 1 H H5 0.276(2) 0.098(2) -0.1111(13) 0.039(4) Uiso d 1 H H7 0.3686(18) -0.1037(18) -0.1384(11) 0.032(4) Uiso d 1 H H8 0.468(2) -0.314(2) -0.0800(13) 0.049(5) Uiso d 1 H H9 0.4549(19) -0.3741(19) 0.0637(11) 0.037(4) Uiso d 1 loop_ _atom_site_aniso_label _atom_site_aniso_U_11 _atom_site_aniso_U_22 _atom_site_aniso_U_33 _atom_site_aniso_U_12 _atom_site_aniso_U_13 _atom_site_aniso_U_23 O6 0.0365(6) 0.0421(6) 0.0550(7) -0.0024(5) 0.0101(5) 0.0084(5) Cu1 0.03459(9) 0.02420(9) 0.02867(9) -0.00029(5) 0.01801(6) 0.00075(5) O3 0.0403(5) 0.0422(5) 0.0450(6) -0.0031(4) 0.0255(4) -0.0099(4) O4 0.0435(5) 0.0355(5) 0.0395(5) -0.0033(4) 0.0217(4) 0.0070(4) O5 0.0417(6) 0.0371(6) 0.0403(6) -0.0046(5) 0.0083(4) -0.0027(4) N2 0.0314(5) 0.0273(5) 0.0250(5) 0.0007(4) 0.0133(4) 0.0002(4) O2 0.0412(5) 0.0267(4) 0.0440(5) 0.0009(4) 0.0258(4) 0.0034(4) N3 0.0402(6) 0.0300(5) 0.0226(5) 0.0008(4) 0.0119(4) 0.0022(4) C6 0.0261(5) 0.0281(5) 0.0231(5) -0.0029(4) 0.0076(4) -0.0010(4) O1 0.0537(6) 0.0275(5) 0.0576(6) 0.0002(4) 0.0377(5) -0.0013(4) C8 0.0344(6) 0.0352(6) 0.0320(6) 0.0016(5) 0.0131(5) -0.0071(5) N1 0.0333(5) 0.0257(5) 0.0267(5) -0.0017(4) 0.0116(4) 0.0004(4) C11 0.0308(6) 0.0312(6) 0.0282(5) -0.0020(5) 0.0116(5) -0.0046(4) C5 0.0269(5) 0.0279(5) 0.0254(5) -0.0027(4) 0.0070(4) 0.0012(4) C12 0.0280(5) 0.0310(6) 0.0244(5) -0.0016(4) 0.0091(4) 0.0005(4) C9 0.0340(6) 0.0296(6) 0.0338(6) 0.0027(5) 0.0116(5) -0.0002(5) C4 0.0377(6) 0.0329(6) 0.0289(6) -0.0022(5) 0.0079(5) 0.0060(5) C7 0.0351(6) 0.0363(6) 0.0247(5) -0.0007(5) 0.0122(5) -0.0027(5) C3 0.0444(7) 0.0287(6) 0.0407(7) -0.0021(5) 0.0089(6) 0.0075(5) C1 0.0412(7) 0.0289(6) 0.0327(6) -0.0027(5) 0.0150(5) -0.0026(5) C10 0.0362(6) 0.0301(6) 0.0277(5) 0.0014(5) 0.0127(5) 0.0024(4) C2 0.0454(7) 0.0268(6) 0.0431(7) -0.0009(5) 0.0155(6) -0.0012(5) loop_ _geom_bond_atom_site_label_1 _geom_bond_atom_site_label_2 _geom_bond_distance _geom_bond_publ_flag O6 H11 0.80(3) ? O6 H12 0.78(3) ? Cu1 O1 1.9623(10) yes Cu1 O2 1.9634(9) yes Cu1 N2 1.9861(10) yes Cu1 N1 1.9863(10) yes Cu1 O5 2.2901(12) yes O3 C11 1.2309(16) yes O4 C12 1.2331(15) yes O5 H14 0.82(3) ? O5 H13 0.79(3) ? N2 C6 1.3393(15) ? N2 C10 1.3626(16) ? O2 C12 1.2721(15) yes N3 C5 1.3791(16) ? N3 C6 1.3873(16) ? N3 H5 0.812(19) ? C6 C7 1.4068(17) ? O1 C11 1.2700(16) yes C8 C7 1.373(2) ? C8 C9 1.3939(19) ? C8 H8 0.94(2) ? N1 C5 1.3427(15) ? N1 C1 1.3647(16) ? C11 C12 1.5487(18) ? C5 C4 1.4083(17) ? C9 C10 1.3703(18) ? C9 H9 0.926(19) ? C4 C3 1.369(2) ? C4 H4 0.931(19) ? C7 H7 0.945(17) ? C3 C2 1.400(2) ? C3 H3 0.94(2) ? C1 C2 1.3665(19) ? C1 H1 1.01(2) ? C10 H10 0.952(16) ? C2 H2 0.936(18) ? loop_ _geom_angle_atom_site_label_1 _geom_angle_atom_site_label_2 _geom_angle_atom_site_label_3 _geom_angle _geom_angle_publ_flag H11 O6 H12 108(3) ? O1 Cu1 O2 83.37(4) yes O1 Cu1 N2 169.41(5) yes O2 Cu1 N2 91.39(4) yes O1 Cu1 N1 90.87(4) yes O2 Cu1 N1 163.65(4) yes N2 Cu1 N1 91.67(4) yes O1 Cu1 O5 96.40(5) yes O2 Cu1 O5 93.32(4) yes N2 Cu1 O5 93.07(4) yes N1 Cu1 O5 102.55(4) yes Cu1 O5 H14 120(2) ? Cu1 O5 H13 110.6(16) ? H14 O5 H13 107(2) ? C6 N2 C10 118.09(10) ? C6 N2 Cu1 125.16(9) ? C10 N2 Cu1 116.70(8) ? C12 O2 Cu1 113.28(8) ? C5 N3 C6 130.82(11) ? C5 N3 H5 113.6(14) ? C6 N3 H5 113.4(14) ? N2 C6 N3 120.83(11) ? N2 C6 C7 121.76(11) ? N3 C6 C7 117.40(11) ? C11 O1 Cu1 113.86(8) ? C7 C8 C9 119.38(12) ? C7 C8 H8 119.1(12) ? C9 C8 H8 121.4(12) ? C5 N1 C1 117.92(11) ? C5 N1 Cu1 124.51(9) ? C1 N1 Cu1 117.22(8) ? O3 C11 O1 125.63(13) ? O3 C11 C12 120.13(12) ? O1 C11 C12 114.24(11) ? N1 C5 N3 121.22(11) ? N1 C5 C4 121.55(12) ? N3 C5 C4 117.22(11) ? O4 C12 O2 125.38(12) ? O4 C12 C11 119.52(11) ? O2 C12 C11 115.10(10) ? C10 C9 C8 118.54(12) ? C10 C9 H9 122.4(11) ? C8 C9 H9 119.1(11) ? C3 C4 C5 119.27(12) ? C3 C4 H4 122.8(12) ? C5 C4 H4 117.9(12) ? C8 C7 C6 119.08(12) ? C8 C7 H7 122.9(11) ? C6 C7 H7 118.0(11) ? C4 C3 C2 119.54(13) ? C4 C3 H3 119.1(14) ? C2 C3 H3 121.2(14) ? N1 C1 C2 123.44(13) ? N1 C1 H1 114.3(11) ? C2 C1 H1 122.2(11) ? N2 C10 C9 123.03(12) ? N2 C10 H10 116.9(10) ? C9 C10 H10 120.1(10) ? C1 C2 C3 118.17(13) ? C1 C2 H2 120.0(12) ? C3 C2 H2 121.8(12) ? loop_ _geom_hbond_atom_site_label_D _geom_hbond_atom_site_label_H _geom_hbond_atom_site_label_A _geom_hbond_site_symmetry_A _geom_hbond_distance_DH _geom_hbond_distance_HA _geom_hbond_distance_DA _geom_hbond_angle_DHA _geom_hbond_publ_flag N3 H5 O6 3_665 0.81(2) 2.23(2) 3.0370(10) 172(2) yes O5 H13 O4 2_555 0.78(3) 2.04(3) 2.8110(10) 166(2) yes O5 H14 O6 1_545 0.82(2) 2.10(3) 2.9150(10) 177(2) yes O6 H12 O3 1_665 0.78(2) 2.36(3) 2.9730(10) 137(2) yes O6 H12 O4 1_665 0.78(2) 2.43(3) 2.9970(10) 131(2) yes