#------------------------------------------------------------------------------ #$Date: 2018-12-07 05:37:56 +0200 (Fri, 07 Dec 2018) $ #$Revision: 212437 $ #$URL: file:///home/coder/svn-repositories/cod/cif/2/10/83/2108349.cif $ #------------------------------------------------------------------------------ # # This file is available in the Crystallography Open Database (COD), # http://www.crystallography.net/. The original data for this entry # were provided by IUCr Journals, http://journals.iucr.org/. # # The file may be used within the scientific community so long as # proper attribution is given to the journal article from which the # data were obtained. # data_2108349 loop_ _publ_author_name 'Kr\"uger, Biljana' 'Kr\"uger, Hannes' 'Galuskin, Evgeny V.' 'Galuskina, Irina O.' 'Vapnik, Yevgeny' 'Olieric, Vincent' 'Pauluhn, Anuschka' _publ_section_title ; Aravaite, Ba~2~Ca~18~(SiO~4~)~6~(PO~4~)~3~(CO~3~)F~3~O: modular structure and disorder of a new mineral with single and triple antiperovskite layers ; _journal_coeditor_code LO5031SUP1 _journal_issue 6 _journal_name_full 'Acta Crystallographica Section B' _journal_page_first 492 _journal_page_last 501 _journal_paper_doi 10.1107/S2052520618012271 _journal_volume 74 _journal_year 2018 _chemical_compound_source 'in spurrite rocks, Hatrurim Complex, Negev Desert, Israel' _chemical_formula_sum 'C0.919 Ba2 Ca17.621 F3.462 Na0.379 O39.7 P2.96 Si6' _chemical_formula_weight 1961.8 _chemical_name_mineral aravaite _chemical_name_systematic ' ?' _space_group_IT_number 166 _symmetry_cell_setting trigonal _symmetry_Int_Tables_number 166 _symmetry_space_group_name_Hall '-R 3 2"' _symmetry_space_group_name_H-M 'R -3 m :H' _cell_angle_alpha 90 _cell_angle_beta 90 _cell_angle_gamma 120 _cell_formula_units_Z 3 _cell_length_a 7.12550(11) _cell_length_b 7.12550(11) _cell_length_c 66.2902(13) _cell_measurement_reflns_used 2944 _cell_measurement_temperature 293 _cell_measurement_theta_max 32.0270 _cell_measurement_theta_min 2.7690 _cell_volume 2914.81(9) _computing_cell_refinement 'CrysAlisPro 1.171.38.43 (Rigaku OD, 2015)' _computing_data_collection ; Wojdyla, J. A.; Kaminski, J. W.; Panepucci, E.; Ebner, S.; Wang, X.; Gabadinho, J. & Wang, M. DA+ data acquisition and analysis software at the Swiss Light Source macromolecular crystallography beamlines Journal of Synchroton Radiation, 2018, 25 doi:10.1107/S1600577517014503 ; _computing_data_reduction ; XDS Version 2016-11-01 Kabsch, W. Integration, scaling, space-group assignment and post refinement Acta Crystallographica, 2010, D66, 133-144 ; _computing_molecular_graphics 'Vesta 3' _computing_structure_refinement 'Jana2006 Version: 6/5/2017' _computing_structure_solution 'SIR2004, Burla et al. 2005' _diffrn_ambient_temperature 293(2) _diffrn_detector 'hybrid pixel CMOS' _diffrn_detector_area_resol_mean 5.81 _diffrn_detector_type PILATUS2M-F _diffrn_measured_fraction_theta_full 0.98 _diffrn_measured_fraction_theta_max 0.92 _diffrn_measurement_details ; Swiss Light Source, Paul Scherrer Insitute, Villigen, Switzerland Beamline X06DA (PXIII) single omega-scan 1800 frames, detector distance = 120 mm Detector threshold setting 8750 eV oscillation 0.1 deg, 0.1 sec exposure vertical detector offset 67 mm ; _diffrn_measurement_device 'multi-axis goniometer' _diffrn_measurement_device_type PRIGo _diffrn_measurement_method '\f scans' _diffrn_measurement_specimen_support litho-loop _diffrn_radiation_monochromator ;Bartels Monochromator with dual channel cut crystals (DCCM) in (+--+) geometry ; _diffrn_radiation_probe x-ray _diffrn_radiation_source 'SLS super-bending magnet 2.9T, X06DA' _diffrn_radiation_wavelength 0.70848 _diffrn_reflns_av_R_equivalents 0.0486 _diffrn_reflns_av_unetI/netI 0.0368 _diffrn_reflns_limit_h_max 9 _diffrn_reflns_limit_h_min -8 _diffrn_reflns_limit_k_max 6 _diffrn_reflns_limit_k_min -10 _diffrn_reflns_limit_l_max 96 _diffrn_reflns_limit_l_min -84 _diffrn_reflns_number 5677 _diffrn_reflns_reduction_process ; XDS Version 2016-11-01 Kabsch, W. Integration, scaling, space-group assignment and post refinement Acta Crystallographica, 2010, D66, 133-144 ; _diffrn_reflns_theta_full 30.7 _diffrn_reflns_theta_max 32.03 _diffrn_reflns_theta_min 0.92 _diffrn_source synchrotron _exptl_absorpt_coefficient_mu 4.701 _exptl_absorpt_correction_type empirical _exptl_absorpt_process_details ;XDS Version 2016-11-01 Kabsch, W. Integration, scaling, space-group assignment and post refinement Acta Crystallographica, 2010, D66, 133-144 ; _exptl_crystal_colour black _exptl_crystal_density_diffrn 3.3529 _exptl_crystal_density_method 'not measured' _exptl_crystal_description prism _exptl_crystal_F_000 2854 _exptl_crystal_size_max 0.06 _exptl_crystal_size_mid 0.025 _exptl_crystal_size_min 0.025 _refine_diff_density_max 12.08 _refine_diff_density_min -2.45 _refine_ls_extinction_method none _refine_ls_goodness_of_fit_gt 3.81 _refine_ls_goodness_of_fit_ref 3.60 _refine_ls_number_constraints 0 _refine_ls_number_parameters 85 _refine_ls_number_reflns 1291 _refine_ls_number_restraints 0 _refine_ls_R_factor_all 0.0851 _refine_ls_R_factor_gt 0.0820 _refine_ls_shift/su_max 0.0486 _refine_ls_shift/su_mean 0.0039 _refine_ls_structure_factor_coef Fsqd _refine_ls_weighting_details w=1/(\s^2^(I)+0.0004I^2^) _refine_ls_weighting_scheme sigma _refine_ls_wR_factor_gt 0.1829 _refine_ls_wR_factor_ref 0.1842 _reflns_number_gt 1145 _reflns_number_total 1291 _reflns_threshold_expression I>3\s(I) _cod_data_source_file lo5031sup1.cif _cod_data_source_block I _cod_original_cell_volume 2914.81(8) _cod_original_sg_symbol_Hall '-R 3;-2' _cod_original_sg_symbol_H-M 'R -3 m' _cod_database_code 2108349 loop_ _space_group_symop_id _space_group_symop_operation_xyz 1 x,y,z 2 -y,x-y,z 3 -x+y,-x,z 4 y,x,-z 5 x-y,-y,-z 6 -x,-x+y,-z 7 -x,-y,-z 8 y,-x+y,-z 9 x-y,x,-z 10 -y,-x,z 11 -x+y,y,z 12 x,x-y,z 13 x+2/3,y+1/3,z+1/3 14 -y+2/3,x-y+1/3,z+1/3 15 -x+y+2/3,-x+1/3,z+1/3 16 y+2/3,x+1/3,-z+1/3 17 x-y+2/3,-y+1/3,-z+1/3 18 -x+2/3,-x+y+1/3,-z+1/3 19 -x+2/3,-y+1/3,-z+1/3 20 y+2/3,-x+y+1/3,-z+1/3 21 x-y+2/3,x+1/3,-z+1/3 22 -y+2/3,-x+1/3,z+1/3 23 -x+y+2/3,y+1/3,z+1/3 24 x+2/3,x-y+1/3,z+1/3 25 x+1/3,y+2/3,z+2/3 26 -y+1/3,x-y+2/3,z+2/3 27 -x+y+1/3,-x+2/3,z+2/3 28 y+1/3,x+2/3,-z+2/3 29 x-y+1/3,-y+2/3,-z+2/3 30 -x+1/3,-x+y+2/3,-z+2/3 31 -x+1/3,-y+2/3,-z+2/3 32 y+1/3,-x+y+2/3,-z+2/3 33 x-y+1/3,x+2/3,-z+2/3 34 -y+1/3,-x+2/3,z+2/3 35 -x+y+1/3,y+2/3,z+2/3 36 x+1/3,x-y+2/3,z+2/3 loop_ _atom_site_label _atom_site_type_symbol _atom_site_fract_x _atom_site_fract_y _atom_site_fract_z _atom_site_adp_type _atom_site_U_iso_or_equiv _atom_site_site_symmetry_multiplicity _atom_site_occupancy _atom_site_calc_flag Ba1 Ba 0 0 0.270337(10) Uani 0.0140(3) 6 1 d Ca1 Ca 0.49749(8) 0.99499(16) 0.23253(2) Uani 0.0066(4) 18 1 d Ca2 Ca 0.98845(19) 0.49422(9) 0.30918(2) Uani 0.0086(4) 18 1 d Ca3 Ca 0.48954(9) 0.97909(18) 0.146883(19) Uani 0.0058(4) 18 0.937(12) d Na3 Na 0.48954(9) 0.97909(18) 0.146883(19) Uani 0.0058(4) 18 0.063(12) d T1 Si 0.666667 0.333333 0.19130(4) Uani 0.0022(5) 6 1 d T2 Si 0.333333 0.666667 0.34596(4) Uiso 0.0015(5) 6 1 d T3 Si 0 0 0.21838(4) Uani 0.0022(5) 6 1 d T4 P 0.666667 0.333333 0.26572(5) Uani 0.0063(8) 6 0.940(12) d T5p P 0.333333 0.666667 0.27450(7) Uiso 0.0071(13) 6 0.54(2) d T5c C 0.333333 0.666667 0.27450(7) Uiso 0.0071(13) 6 0.46(2) d O1 O 0.2223(4) 0.7777(4) 0.28273(8) Uani 0.017(2) 18 0.865(14) d O2 O 0.333333 0.666667 0.25243(12) Uani 0.012(2) 6 1 d O3 O 0.4578(4) 0.9155(7) 0.35310(8) Uani 0.0193(16) 18 1 d O4 O 0.666667 0.333333 0.28903(12) Uani 0.0103(19) 6 1 d O5 O 0.5421(3) 0.0842(7) 0.18354(7) Uiso 0.0101(8) 18 1 d O6 O 0.333333 0.666667 0.32173(13) Uani 0.018(2) 6 1 d O7 O 0.666667 0.333333 0.21597(11) Uani 0.0088(19) 6 1 d O8 O 0.7482(6) 0.8741(3) 0.22475(7) Uani 0.0111(14) 18 1 d O9 O 0.7834(3) 0.2166(3) 0.25706(6) Uani 0.0114(14) 18 1 d O10 O 0 0 0.19203(11) Uiso 0.0031 6 1 d O11 O 0.333333 0.666667 0.166667 Uiso 0.002(2) 3 0.53(16) d F1 F 0.333333 0.666667 0.166667 Uiso 0.002(2) 3 0.47(16) d F2 F 0.666667 0.333333 0.333333 Uani 0.013(2) 3 1 d F3 F 0.333333 0.666667 0.12406(10) Uani 0.0082(18) 6 0.993(19) d loop_ _atom_site_aniso_label _atom_site_aniso_type_symbol _atom_site_aniso_U_11 _atom_site_aniso_U_22 _atom_site_aniso_U_33 _atom_site_aniso_U_12 _atom_site_aniso_U_13 _atom_site_aniso_U_23 Ba1 Ba 0.0142(3) 0.0142(3) 0.0135(4) 0.00711(16) 0 0 Ca1 Ca 0.0017(5) 0.0015(6) 0.0164(7) 0.0008(3) -0.0007(2) -0.0014(4) Ca2 Ca 0.0033(6) 0.0028(5) 0.0201(8) 0.0016(3) -0.0010(4) -0.0005(2) Ca3 Ca 0.0023(5) 0.0034(6) 0.0119(7) 0.0017(3) 0.0006(2) 0.0012(4) Na3 Na 0.0023(5) 0.0034(6) 0.0119(7) 0.0017(3) 0.0006(2) 0.0012(4) T1 Si 0.0003(5) 0.0003(5) 0.0058(9) 0.0002(3) 0 0 T3 Si 0.0003(5) 0.0003(5) 0.0058(9) 0.0002(3) 0 0 T4 P 0.0069(10) 0.0069(10) 0.0051(14) 0.0035(5) 0 0 O1 O 0.022(2) 0.022(2) 0.010(3) 0.013(2) -0.0006(10) 0.0006(10) O2 O 0.014(2) 0.014(2) 0.008(4) 0.0072(12) 0 0 O3 O 0.0065(15) 0.0035(19) 0.047(3) 0.0017(10) -0.0052(10) -0.010(2) O4 O 0.013(2) 0.013(2) 0.005(4) 0.0066(11) 0 0 O6 O 0.021(3) 0.021(3) 0.012(4) 0.0104(14) 0 0 O7 O 0.009(2) 0.009(2) 0.008(4) 0.0046(11) 0 0 O8 O 0.0023(18) 0.0063(14) 0.023(3) 0.0011(9) 0.0020(16) 0.0010(8) O9 O 0.0129(15) 0.0129(15) 0.012(2) 0.0092(18) -0.0013(8) 0.0013(8) F2 F 0.016(3) 0.016(3) 0.007(4) 0.0079(14) 0 0 F3 F 0.008(2) 0.008(2) 0.009(3) 0.0038(10) 0 0 loop_ _atom_type_symbol _atom_type_scat_dispersion_real _atom_type_scat_dispersion_imag _atom_type_scat_source C 0.0034 0.0017 'International Tables Vol C tables 4.2.6.8 and 6.1.1.1' Ba -0.3244 2.2819 'International Tables Vol C tables 4.2.6.8 and 6.1.1.1' Ca 0.2262 0.3064 'International Tables Vol C tables 4.2.6.8 and 6.1.1.1' F 0.0171 0.0103 'International Tables Vol C tables 4.2.6.8 and 6.1.1.1' Na 0.0368 0.0255 'International Tables Vol C tables 4.2.6.8 and 6.1.1.1' O 0.0106 0.0060 'International Tables Vol C tables 4.2.6.8 and 6.1.1.1' P 0.1023 0.0942 'International Tables Vol C tables 4.2.6.8 and 6.1.1.1' Si 0.0817 0.0704 'International Tables Vol C tables 4.2.6.8 and 6.1.1.1' loop_ _geom_bond_atom_site_label_1 _geom_bond_atom_site_label_2 _geom_bond_site_symmetry_2 _geom_bond_distance Ba1 T2 28_445 3.339(3) Ba1 T3 . 3.444(3) Ba1 O1 1_545 2.864(4) Ba1 O1 2_665 2.864(4) Ba1 O1 3_455 2.864(4) Ba1 O3 28_445 3.251(5) Ba1 O3 29_555 3.251(5) Ba1 O3 30_545 3.251(6) Ba1 O8 1_445 3.398(5) Ba1 O8 2_655 3.398(5) Ba1 O8 3_565 3.398(5) Ba1 O9 1_455 2.815(3) Ba1 O9 2_545 2.815(3) Ba1 O9 3_665 2.815(3) Ca1 T1 1_565 3.439(3) Ca1 T4 1_565 3.033(2) Ca1 T5p . 3.442(4) Ca1 T5c . 3.442(4) Ca1 O2 . 2.418(4) Ca1 O5 1_565 3.294(5) Ca1 O7 1_565 2.359(4) Ca1 O8 . 2.395(5) Ca1 O8 2_665 2.395(3) Ca1 O9 1_565 2.464(3) Ca1 O9 3_675 2.464(4) Ca1 F3 16_455 2.546(4) Ca2 Ca2 2_655 3.4393(17) Ca2 Ca2 3_665 3.4393(12) Ca2 T2 1_655 3.236(2) Ca2 T4 . 3.499(3) Ca2 T5p 1_655 3.133(3) Ca2 T5c 1_655 3.133(3) Ca2 O1 1_655 2.563(4) Ca2 O1 2_765 2.563(5) Ca2 O3 2_765 2.971(6) Ca2 O3 29_665 2.357(7) Ca2 O3 30_645 2.357(6) Ca2 O4 . 2.393(4) Ca2 O6 1_655 2.285(3) Ca2 F2 . 2.5507(12) Ca3 Ca3 2_665 3.3392(12) Ca3 Ca3 3_565 3.3392(16) Ca3 Ca3 16_455 3.2552(18) Ca3 Ca3 18_555 3.2552(15) Ca3 Na3 . 0 Ca3 Na3 2_665 3.3392(12) Ca3 Na3 3_565 3.3392(16) Ca3 Na3 16_455 3.2552(18) Ca3 Na3 18_555 3.2552(15) Ca3 T3 16_565 3.043(2) Ca3 O5 1_565 2.515(5) Ca3 O5 16_555 2.329(5) Ca3 O5 18_565 2.329(3) Ca3 O8 16_455 2.616(5) Ca3 O10 16_565 2.2170(16) Ca3 O11 . 2.3317(12) Ca3 F1 . 2.3317(12) Ca3 F3 . 2.451(4) Na3 Na3 2_665 3.3392(12) Na3 Na3 3_565 3.3392(16) Na3 Na3 16_455 3.2552(18) Na3 Na3 18_555 3.2552(15) Na3 T3 16_565 3.043(2) Na3 O5 1_565 2.515(5) Na3 O5 16_555 2.329(5) Na3 O5 18_565 2.329(3) Na3 O8 16_455 2.616(5) Na3 O10 16_565 2.2170(16) Na3 O11 . 2.3317(12) Na3 F1 . 2.3317(12) Na3 F3 . 2.451(4) T1 O5 . 1.621(4) T1 O5 2_655 1.621(4) T1 O5 3_665 1.621(5) T1 O7 . 1.636(8) T1 O10 16_555 3.314(8) T2 O3 . 1.607(5) T2 O3 2_665 1.607(5) T2 O3 3_565 1.607(5) T2 O6 . 1.606(9) T3 O8 1_445 1.610(4) T3 O8 2_655 1.610(5) T3 O8 3_565 1.610(4) T3 O10 . 1.747(7) T4 O4 . 1.545(8) T4 O7 . 3.298(8) T4 O9 . 1.551(3) T4 O9 2_655 1.551(3) T4 O9 3_665 1.551(3) T5p T5c . 0 T5p O1 . 1.475(4) T5p O1 2_665 1.475(4) T5p O1 3_565 1.475(4) T5p O2 . 1.463(9) T5p O6 . 3.130(10) T5c O1 . 1.475(4) T5c O1 2_665 1.475(4) T5c O1 3_565 1.475(4) T5c O2 . 1.463(9) T5c O6 . 3.130(10) O1 O1 2_665 2.373(6) O1 O1 3_565 2.373(6) O1 O2 . 2.431(8) O1 O3 28_455 3.139(6) O1 O3 29_565 3.139(7) O1 O6 . 2.926(9) O1 O9 2_555 3.199(5) O1 O9 3_675 3.199(5) O2 O8 . 3.150(6) O2 O8 2_665 3.150(7) O2 O8 3_565 3.150(6) O2 F3 16_455 2.861(10) O3 O3 2_665 2.660(5) O3 O3 3_565 2.660(7) O3 O4 28_555 3.048(6) O3 O6 . 2.585(9) O3 F2 1_565 2.892(5) O4 O9 . 2.563(7) O4 O9 2_655 2.563(7) O4 O9 3_665 2.563(7) O4 F2 . 2.937(8) O5 O5 2_655 2.663(5) O5 O5 3_665 2.663(6) O5 O5 16_545 3.412(7) O5 O5 18_555 3.412(5) O5 O7 . 2.643(7) O5 O10 16_555 3.194(7) O5 O11 1_545 2.809(4) O5 F1 1_545 2.809(4) O5 F3 16_445 3.090(6) O7 O9 . 3.081(8) O7 O9 2_655 3.081(8) O7 O9 3_665 3.081(8) O8 O8 2_765 2.691(6) O8 O8 3_675 2.691(4) O8 O9 1_565 3.162(5) O8 O9 2_655 3.162(6) O8 O10 1_665 2.668(7) O8 F3 16_455 2.758(5) O9 O9 2_655 2.495(5) O9 O9 3_665 2.495(5) O11 F1 . 0 O11 F3 . 2.825(6) O11 F3 16_455 2.825(6) F1 F3 . 2.825(6) F1 F3 16_455 2.825(6) _cod_database_fobs_code 2108349