#------------------------------------------------------------------------------ #$Date: 2011-09-10 06:16:28 +0300 (Sat, 10 Sep 2011) $ #$Revision: 25271 $ #$URL: file:///home/coder/svn-repositories/cod/cif/2/2200245.cif $ #------------------------------------------------------------------------------ # # This file is available in the Crystallography Open Database (COD), # http://www.crystallography.net/. The original data for this entry # were provided by IUCr Journals, http://journals.iucr.org/. # # The file may be used within the scientific community so long as # proper attribution is given to the journal article from which the # data were obtained. # data_2200245 loop_ _publ_author_name 'Menschise, Valeria' 'Didierjean, Claude' 'Semetey, Vincent' 'Guichard, Gilles' 'Briand, Jean-Paul' 'Aubry, Andr\'e' _publ_section_title ; (S)-O-Succinimidyl N-[2-(tert-butoxycarbonylamino)propyl]carbamate ; _journal_issue 3 _journal_name_full 'Acta Crystallographica Section E' _journal_page_first o222 _journal_page_last o224 _journal_volume 57 _journal_year 2001 _chemical_formula_iupac 'C13 H21 N3 O6' _chemical_formula_moiety 'C13 H21 N3 O6' _chemical_formula_sum 'C13 H21 N3 O6' _chemical_formula_weight 315.33 _chemical_name_systematic ; (S)-O-Succinimidyl N-[2-(tert-butoxycarbonylamino)propyl]carbamate ; _space_group_IT_number 4 _symmetry_cell_setting monoclinic _symmetry_space_group_name_Hall 'P 2yb' _symmetry_space_group_name_H-M 'P 1 21 1' _audit_creation_method SHELXL-97 _cell_angle_alpha 90.00 _cell_angle_beta 91.996(3) _cell_angle_gamma 90.00 _cell_formula_units_Z 2 _cell_length_a 5.1260(2) _cell_length_b 8.5650(4) _cell_length_c 18.7540(9) _cell_measurement_reflns_used 5236 _cell_measurement_temperature 293(2) _cell_measurement_theta_max 26.3 _cell_measurement_theta_min 4.0 _cell_volume 822.88(6) _computing_cell_refinement COLLECT _computing_data_collection 'COLLECT (Nonius, 1998)' _computing_data_reduction 'HKL (Otwinoski & Minor, 1997)' _computing_molecular_graphics 'maXus (Mackay et al., 1999) ' _computing_structure_refinement 'SHELXL97 (Sheldrick, 1997)' _computing_structure_solution 'SIR92 (Altomare et al., 1994)' _diffrn_ambient_temperature 293(2) _diffrn_measured_fraction_theta_full .992 _diffrn_measured_fraction_theta_max .992 _diffrn_measurement_device_type KappaCCD _diffrn_measurement_method oscillation _diffrn_radiation_monochromator graphite _diffrn_radiation_source 'fine-focus sealed tube' _diffrn_radiation_type MoK\a _diffrn_radiation_wavelength .71070 _diffrn_reflns_av_R_equivalents .030 _diffrn_reflns_av_sigmaI/netI .034 _diffrn_reflns_limit_h_max 6 _diffrn_reflns_limit_h_min 0 _diffrn_reflns_limit_k_max 10 _diffrn_reflns_limit_k_min 0 _diffrn_reflns_limit_l_max 23 _diffrn_reflns_limit_l_min -23 _diffrn_reflns_number 5236 _diffrn_reflns_theta_full 26.3 _diffrn_reflns_theta_max 26.3 _diffrn_reflns_theta_min 4.0 _diffrn_standards_decay_% 0 _diffrn_standards_number 0 _exptl_absorpt_coefficient_mu .10 _exptl_absorpt_correction_type none _exptl_crystal_colour colorless _exptl_crystal_density_diffrn 1.273 _exptl_crystal_density_method 'not measured' _exptl_crystal_description prismatic _exptl_crystal_F_000 336 _exptl_crystal_size_max .3 _exptl_crystal_size_mid .25 _exptl_crystal_size_min .22 _refine_diff_density_max .11 _refine_diff_density_min -.17 _refine_ls_extinction_method none _refine_ls_goodness_of_fit_ref 1.03 _refine_ls_hydrogen_treatment mixed _refine_ls_matrix_type full _refine_ls_number_parameters 205 _refine_ls_number_reflns 1792 _refine_ls_number_restraints 3 _refine_ls_restrained_S_all 1.03 _refine_ls_R_factor_all .053 _refine_ls_R_factor_gt .037 _refine_ls_shift/su_max <0.001 _refine_ls_shift/su_mean .000 _refine_ls_structure_factor_coef Fsqd _refine_ls_weighting_details 'calc w = 1/[\s^2^(Fo^2^)+(0.0553P)^2^+0.0391P] where P = (Fo^2^+2Fc^2^)/3' _refine_ls_weighting_scheme calc _refine_ls_wR_factor_ref .097 _reflns_number_gt 1436 _reflns_number_total 1792 _reflns_threshold_expression I>2\s(I) _[local]_cod_data_source_file ya6006.cif _[local]_cod_data_source_block I _[local]_cod_cif_authors_sg_H-M 'P 21' _cod_database_code 2200245 loop_ _symmetry_equiv_pos_as_xyz 'x, y, z' '-x, y+1/2, -z' loop_ _atom_site_label _atom_site_fract_x _atom_site_fract_y _atom_site_fract_z _atom_site_U_iso_or_equiv _atom_site_adp_type _atom_site_calc_flag _atom_site_refinement_flags _atom_site_occupancy _atom_site_type_symbol C1 -.2288(4) .3268(3) .57925(13) .0505(6) Uani d . 1 C C2 -.0629(5) .4397(4) .53911(19) .0799(10) Uani d . 1 C H2A .0275 .3847 .5028 .104 Uiso calc R 1 H H2B .0617 .4879 .5716 .104 Uiso calc R 1 H H2C -.1723 .5186 .5173 .104 Uiso calc R 1 H C3 -.4126(5) .2386(4) .52903(14) .0640(7) Uani d . 1 C H3A -.3143 .1870 .4933 .083 Uiso calc R 1 H H3B -.5334 .3103 .5065 .083 Uiso calc R 1 H H3C -.5071 .1624 .5554 .083 Uiso calc R 1 H C4 -.3705(6) .4101(4) .63710(17) .0717(8) Uani d . 1 C H4A -.2470 .4659 .6671 .093 Uiso calc R 1 H H4B -.4612 .3352 .6652 .093 Uiso calc R 1 H H4C -.4937 .4823 .6159 .093 Uiso calc R 1 H O1 -.0307(3) .2195(2) .61109(9) .0533(5) Uani d . 1 O C5 -.0988(4) .1042(3) .65552(13) .0464(6) Uani d . 1 C O2 -.3204(3) .0650(3) .66664(11) .0680(6) Uani d . 1 O N1 .1146(3) .0388(3) .68556(11) .0497(5) Uani d D 1 N H1 .283(3) .081(4) .6670(12) .065 Uiso d D 1 H C6 .1006(4) -.0925(3) .73422(12) .0487(6) Uani d . 1 C H6 -.0739 -.0946 .7539 .063 Uiso calc R 1 H C7 .1472(7) -.2466(4) .69701(19) .0802(10) Uani d . 1 C H7A .0171 -.2611 .6596 .104 Uiso calc R 1 H H7B .1369 -.3303 .7308 .104 Uiso calc R 1 H H7C .3173 -.2459 .6771 .104 Uiso calc R 1 H C8 .3002(4) -.0704(3) .79532(12) .0484(6) Uani d . 1 C H8A .2844 -.1552 .8292 .063 Uiso calc R 1 H H8B .4745 -.0741 .7768 .063 Uiso calc R 1 H N2 .2643(3) .0775(3) .83175(11) .0507(5) Uani d D 1 N H2 .081(3) .121(4) .8364(13) .066 Uiso d D 1 H C9 .4632(5) .1632(3) .85544(13) .0507(6) Uani d . 1 C O3 .6921(3) .1383(3) .85408(11) .0694(6) Uani d . 1 O O4 .3633(3) .2988(2) .88774(10) .0644(5) Uani d . 1 O N3 .5616(4) .3975(3) .91066(11) .0584(6) Uani d . 1 N C10 .6574(6) .5138(4) .86724(16) .0653(8) Uani d . 1 C O5 .5707(6) .5414(4) .80823(12) .1015(8) Uani d . 1 O C11 .8740(5) .5889(4) .90923(16) .0725(8) Uani d . 1 C H11A .8381 .6990 .9161 .094 Uiso calc R 1 H H11B 1.0368 .5789 .8848 .094 Uiso calc R 1 H C12 .8908(5) .5049(4) .98018(15) .0709(9) Uani d . 1 C H12A 1.0620 .4583 .9879 .092 Uiso calc R 1 H H12B .8601 .5769 1.0189 .092 Uiso calc R 1 H C13 .6842(5) .3813(4) .97655(15) .0606(7) Uani d . 1 C O6 .6276(4) .2834(3) 1.01994(12) .0886(7) Uani d . 1 O loop_ _atom_site_aniso_label _atom_site_aniso_U_11 _atom_site_aniso_U_22 _atom_site_aniso_U_33 _atom_site_aniso_U_12 _atom_site_aniso_U_13 _atom_site_aniso_U_23 C1 .0311(10) .0514(14) .0686(15) .0023(10) -.0046(10) .0046(13) C2 .0481(14) .079(2) .112(2) .0056(15) -.0033(14) .042(2) C3 .0483(13) .0763(19) .0667(17) .0101(14) -.0066(11) -.0067(16) C4 .0622(16) .0658(18) .087(2) .0080(15) -.0030(14) -.0172(18) O1 .0290(7) .0590(11) .0718(11) .0008(7) .0004(7) .0189(10) C5 .0313(12) .0510(15) .0566(13) -.0035(10) -.0002(9) .0027(12) O2 .0287(8) .0807(14) .0947(13) -.0057(9) .0038(8) .0272(12) N1 .0289(8) .0587(13) .0614(12) -.0017(9) .0021(8) .0118(11) C6 .0411(11) .0487(14) .0564(13) -.0054(11) .0004(10) .0034(13) C7 .103(2) .0571(19) .079(2) -.0039(17) -.0194(17) -.0078(17) C8 .0413(11) .0508(15) .0531(13) .0011(11) .0014(9) .0025(12) N2 .0334(10) .0598(14) .0589(12) .0016(9) .0003(8) -.0079(11) C9 .0413(13) .0609(17) .0498(13) .0011(12) .0015(10) -.0048(12) O3 .0344(9) .0810(14) .0929(14) .0008(9) .0027(8) -.0244(12) O4 .0463(9) .0648(13) .0819(12) .0027(9) -.0021(8) -.0224(11) N3 .0545(12) .0590(14) .0613(13) -.0045(11) -.0046(10) -.0099(12) C10 .0690(17) .0602(19) .0667(18) .0091(15) .0035(13) -.0066(16) O5 .130(2) .099(2) .0745(14) .0048(16) -.0167(14) .0116(15) C11 .0668(17) .065(2) .086(2) -.0044(15) .0131(14) -.0089(18) C12 .0575(15) .091(2) .0638(17) -.0073(16) .0008(12) -.0215(18) C13 .0527(14) .072(2) .0568(15) .0036(14) .0036(12) -.0066(16) O6 .0862(14) .108(2) .0720(14) -.0075(14) .0033(11) .0133(15) loop_ _atom_type_symbol _atom_type_description _atom_type_scat_dispersion_real _atom_type_scat_dispersion_imag _atom_type_scat_source C C .0033 .0016 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' H H .0000 .0000 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' N N .0061 .0033 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' O O .0106 .0060 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' loop_ _geom_angle_atom_site_label_1 _geom_angle_atom_site_label_2 _geom_angle_atom_site_label_3 _geom_angle O1 C1 C4 110.2(2) O1 C1 C2 102.08(17) C4 C1 C2 110.5(3) O1 C1 C3 110.2(2) C4 C1 C3 112.3(2) C2 C1 C3 111.1(2) C1 C2 H2A 109.5 C1 C2 H2B 109.5 H2A C2 H2B 109.5 C1 C2 H2C 109.5 H2A C2 H2C 109.5 H2B C2 H2C 109.5 C1 C3 H3A 109.5 C1 C3 H3B 109.5 H3A C3 H3B 109.5 C1 C3 H3C 109.5 H3A C3 H3C 109.5 H3B C3 H3C 109.5 C1 C4 H4A 109.5 C1 C4 H4B 109.5 H4A C4 H4B 109.5 C1 C4 H4C 109.5 H4A C4 H4C 109.5 H4B C4 H4C 109.5 C5 O1 C1 121.10(16) O2 C5 N1 124.8(2) O2 C5 O1 125.1(2) N1 C5 O1 110.03(17) C5 N1 C6 122.14(18) C5 N1 H1 113.6(17) C6 N1 H1 123.9(17) N1 C6 C7 111.9(2) N1 C6 C8 109.31(19) C7 C6 C8 110.0(2) N1 C6 H6 108.5 C7 C6 H6 108.5 C8 C6 H6 108.5 C6 C7 H7A 109.5 C6 C7 H7B 109.5 H7A C7 H7B 109.5 C6 C7 H7C 109.5 H7A C7 H7C 109.5 H7B C7 H7C 109.5 N2 C8 C6 111.7(2) N2 C8 H8A 109.3 C6 C8 H8A 109.3 N2 C8 H8B 109.3 C6 C8 H8B 109.3 H8A C8 H8B 107.9 C9 N2 C8 122.2(2) C9 N2 H2 118.2(17) C8 N2 H2 119.5(17) O3 C9 N2 129.9(2) O3 C9 O4 121.8(2) N2 C9 O4 108.29(19) N3 O4 C9 111.27(17) C13 N3 O4 121.8(2) C13 N3 C10 116.2(2) O4 N3 C10 121.9(2) O5 C10 N3 123.7(3) O5 C10 C11 130.4(3) N3 C10 C11 105.9(2) C10 C11 C12 106.2(3) C10 C11 H11A 110.5 C12 C11 H11A 110.5 C10 C11 H11B 110.5 C12 C11 H11B 110.5 H11A C11 H11B 108.7 C13 C12 C11 106.1(2) C13 C12 H12A 110.5 C11 C12 H12A 110.5 C13 C12 H12B 110.5 C11 C12 H12B 110.5 H12A C12 H12B 108.7 O6 C13 N3 124.2(3) O6 C13 C12 130.1(3) N3 C13 C12 105.7(3) loop_ _geom_bond_atom_site_label_1 _geom_bond_atom_site_label_2 _geom_bond_distance C1 O1 1.479(3) C1 C4 1.507(4) C1 C2 1.507(4) C1 C3 1.511(3) C2 H2A .9600 C2 H2B .9600 C2 H2C .9600 C3 H3A .9600 C3 H3B .9600 C3 H3C .9600 C4 H4A .9600 C4 H4B .9600 C4 H4C .9600 O1 C5 1.346(3) C5 O2 1.210(3) C5 N1 1.336(3) N1 C6 1.451(3) N1 H1 1.010(10) C6 C7 1.516(4) C6 C8 1.521(3) C6 H6 .9800 C7 H7A .9600 C7 H7B .9600 C7 H7C .9600 C8 N2 1.454(3) C8 H8A .9700 C8 H8B .9700 N2 C9 1.321(3) N2 H2 1.016(10) C9 O3 1.194(3) C9 O4 1.415(3) O4 N3 1.379(3) N3 C13 1.374(3) N3 C10 1.387(4) C10 O5 1.202(4) C10 C11 1.486(4) C11 C12 1.513(4) C11 H11A .9700 C11 H11B .9700 C12 C13 1.498(4) C12 H12A .9700 C12 H12B .9700 C13 O6 1.210(4) loop_ _geom_hbond_atom_site_label_D _geom_hbond_atom_site_label_H _geom_hbond_atom_site_label_A _geom_hbond_site_symmetry_A _geom_hbond_distance_DH _geom_hbond_distance_HA _geom_hbond_distance_DA _geom_hbond_angle_DHA N1 H1 O2 1_655 1.010(10) 2.037(18) 2.938(2) 147(2) N2 H2 O3 1_455 1.016(10) 2.038(14) 3.022(3) 162(3) loop_ _geom_torsion_atom_site_label_1 _geom_torsion_atom_site_label_2 _geom_torsion_atom_site_label_3 _geom_torsion_atom_site_label_4 _geom_torsion _geom_torsion_publ_flag O1 C5 N1 C6 -177.9(2) y C5 N1 C6 C8 -139.7(2) y N1 C6 C8 N2 55.9(3) y C6 C8 N2 C9 -141.7(2) y C8 N2 C9 O4 179.76(19) y N2 C9 O4 N3 -177.1(2) y C9 O4 N3 C10 90.4(3) y C4 C1 O1 C5 58.6(3) ? C2 C1 O1 C5 176.0(2) ? C3 C1 O1 C5 -65.8(3) ? C1 O1 C5 O2 9.5(4) ? C1 O1 C5 N1 -170.7(2) ? O2 C5 N1 C6 1.9(4) ? C5 N1 C6 C7 98.2(3) ? C7 C6 C8 N2 179.2(2) ? C8 N2 C9 O3 -2.2(4) ? O3 C9 O4 N3 4.7(3) ? C9 O4 N3 C13 -86.4(3) ? C13 N3 C10 O5 179.8(3) ? O4 N3 C10 O5 2.8(4) ? C13 N3 C10 C11 -.6(3) ? O4 N3 C10 C11 -177.5(2) ? O5 C10 C11 C12 179.4(3) ? N3 C10 C11 C12 -.2(3) ? C10 C11 C12 C13 .8(3) ? O4 N3 C13 O6 -1.5(4) ? C10 N3 C13 O6 -178.4(3) ? O4 N3 C13 C12 178.0(2) ? C10 N3 C13 C12 1.1(3) ? C11 C12 C13 O6 178.3(3) ? C11 C12 C13 N3 -1.1(3) ?