#------------------------------------------------------------------------------ #$Date: 2014-05-17 02:54:33 +0300 (Sat, 17 May 2014) $ #$Revision: 113901 $ #$URL: file:///home/coder/svn-repositories/cod/cif/4/02/94/4029450.cif $ #------------------------------------------------------------------------------ # # This file is available in the Crystallography Open Database (COD), # http://www.crystallography.net/ # # All data on this site have been placed in the public domain by the # contributors. # data_4029450 loop_ _publ_author_name 'Wang, Siyuan' 'Otani, Yuko' 'Liu, Xin' 'Kawahata, Masatoshi' 'Yamaguchi, Kentaro' 'Ohwada, Tomohiko' _publ_section_title ; Robust Trans-Amide Helical Structure of Oligomers of Bicyclic Mimics of beta-Proline: Impact of Positional Switching of Bridgehead Substituent on Amide Cis-Trans Equilibrium. ; _journal_name_full 'The Journal of organic chemistry' _journal_page_first 140516130739009 _journal_paper_doi 10.1021/jo500916j _journal_year 2014 _chemical_absolute_configuration rm _chemical_formula_sum 'C23 H28 F3 N O7' _chemical_formula_weight 487.46 _chemical_name_systematic ; ? ; _space_group_IT_number 19 _symmetry_cell_setting orthorhombic _symmetry_space_group_name_Hall 'P 2ac 2ab' _symmetry_space_group_name_H-M 'P 21 21 21' _atom_sites_solution_hydrogens geom _atom_sites_solution_primary direct _atom_sites_solution_secondary difmap _audit_creation_method SHELXL-97 _cell_angle_alpha 90.00 _cell_angle_beta 90.00 _cell_angle_gamma 90.00 _cell_formula_units_Z 4 _cell_length_a 8.9709(8) _cell_length_b 14.6155(13) _cell_length_c 18.1662(17) _cell_measurement_reflns_used 8741 _cell_measurement_temperature 120 _cell_measurement_theta_max 27.14 _cell_measurement_theta_min 2.24 _cell_volume 2381.8(4) _computing_cell_refinement SMART _computing_data_collection SMART _computing_data_reduction SAINT _computing_molecular_graphics 'ORTEP-3 for Windows' _computing_publication_material SHELXL-97 _computing_structure_refinement SHELXL-97 _computing_structure_solution SHELXS-97 _diffrn_ambient_temperature 120 _diffrn_detector_area_resol_mean 8.333 _diffrn_measured_fraction_theta_full 1.000 _diffrn_measured_fraction_theta_max 0.995 _diffrn_measurement_device_type 'Bruker SMART 1000 CCD area detector' _diffrn_measurement_method '\f and \w scans' _diffrn_radiation_monochromator graphite _diffrn_radiation_source 'fine-focus sealed tube' _diffrn_radiation_type MoK\a _diffrn_radiation_wavelength 0.71073 _diffrn_reflns_av_R_equivalents 0.0404 _diffrn_reflns_av_sigmaI/netI 0.0295 _diffrn_reflns_limit_h_max 11 _diffrn_reflns_limit_h_min -11 _diffrn_reflns_limit_k_max 18 _diffrn_reflns_limit_k_min -19 _diffrn_reflns_limit_l_max 23 _diffrn_reflns_limit_l_min -23 _diffrn_reflns_number 27469 _diffrn_reflns_theta_full 25.00 _diffrn_reflns_theta_max 27.52 _diffrn_reflns_theta_min 1.79 _diffrn_standards_decay_% 0 _diffrn_standards_number 0 _exptl_absorpt_coefficient_mu 0.115 _exptl_absorpt_correction_type none _exptl_crystal_colour colourless _exptl_crystal_density_diffrn 1.359 _exptl_crystal_density_method 'not measured' _exptl_crystal_description prismatic _exptl_crystal_F_000 1024 _exptl_crystal_size_max 0.30 _exptl_crystal_size_mid 0.20 _exptl_crystal_size_min 0.20 _refine_diff_density_max 0.210 _refine_diff_density_min -0.166 _refine_diff_density_rms 0.036 _refine_ls_abs_structure_details 'Flack H D (1983), Acta Cryst. A39, 876-881' _refine_ls_abs_structure_Flack -0.2(4) _refine_ls_extinction_method none _refine_ls_goodness_of_fit_ref 1.057 _refine_ls_hydrogen_treatment constr _refine_ls_matrix_type full _refine_ls_number_parameters 312 _refine_ls_number_reflns 5453 _refine_ls_number_restraints 0 _refine_ls_restrained_S_all 1.057 _refine_ls_R_factor_all 0.0369 _refine_ls_R_factor_gt 0.0304 _refine_ls_shift/su_max 0.000 _refine_ls_shift/su_mean 0.000 _refine_ls_structure_factor_coef Fsqd _refine_ls_weighting_details 'calc w=1/[\s^2^(Fo^2^)+(0.0260P)^2^+0.5172P] where P=(Fo^2^+2Fc^2^)/3' _refine_ls_weighting_scheme calc _refine_ls_wR_factor_gt 0.0677 _refine_ls_wR_factor_ref 0.0705 _reflns_number_gt 4856 _reflns_number_total 5453 _reflns_threshold_expression >2sigma(I) _[local]_cod_data_source_file jo500916j_si_001.cif _[local]_cod_data_source_block wsy-01-111#991063 _[local]_cod_cif_authors_sg_H-M P212121 _cod_database_code 4029450 loop_ _symmetry_equiv_pos_as_xyz 'x, y, z' '-x+1/2, -y, z+1/2' '-x, y+1/2, -z+1/2' 'x+1/2, -y+1/2, -z' loop_ _atom_site_label _atom_site_type_symbol _atom_site_fract_x _atom_site_fract_y _atom_site_fract_z _atom_site_U_iso_or_equiv _atom_site_adp_type _atom_site_occupancy _atom_site_symmetry_multiplicity _atom_site_calc_flag _atom_site_refinement_flags C1 C 0.51061(15) 0.03257(9) 0.68319(7) 0.0186(3) Uani 1 1 d . C2 C 0.37704(15) 0.09835(9) 0.69119(7) 0.0187(3) Uani 1 1 d . H2 H 0.2932 0.0782 0.6587 0.022 Uiso 1 1 calc R C3 C 0.43974(16) 0.19065(9) 0.66424(8) 0.0226(3) Uani 1 1 d . H3A H 0.3814 0.2148 0.6223 0.027 Uiso 1 1 calc R H3B H 0.4409 0.2366 0.7043 0.027 Uiso 1 1 calc R C4 C 0.59801(16) 0.16459(9) 0.64072(8) 0.0220(3) Uani 1 1 d . H4 H 0.6436 0.2067 0.6036 0.026 Uiso 1 1 calc R C5 C 0.69375(18) 0.14853(11) 0.70976(8) 0.0288(3) Uani 1 1 d . H5A H 0.6807 0.1986 0.7459 0.035 Uiso 1 1 calc R H5B H 0.8007 0.1432 0.6970 0.035 Uiso 1 1 calc R C6 C 0.63157(16) 0.05625(10) 0.74016(8) 0.0250(3) Uani 1 1 d . H6A H 0.7100 0.0087 0.7419 0.030 Uiso 1 1 calc R H6B H 0.5884 0.0640 0.7899 0.030 Uiso 1 1 calc R C7 C 0.46042(15) -0.06621(10) 0.68052(8) 0.0216(3) Uani 1 1 d . C8 C 0.30048(18) -0.16896(10) 0.62022(10) 0.0342(4) Uani 1 1 d . H8A H 0.3779 -0.2163 0.6198 0.051 Uiso 1 1 calc R H8B H 0.2405 -0.1737 0.5753 0.051 Uiso 1 1 calc R H8C H 0.2363 -0.1774 0.6633 0.051 Uiso 1 1 calc R C9 C 0.19349(15) 0.12986(9) 0.78034(7) 0.0190(3) Uani 1 1 d . C10 C 0.14748(14) 0.10978(9) 0.86069(7) 0.0177(3) Uani 1 1 d . C11 C 0.01540(16) 0.17284(10) 0.88155(8) 0.0226(3) Uani 1 1 d . C12 C 0.09649(15) 0.00999(9) 0.86570(7) 0.0194(3) Uani 1 1 d . C13 C 0.0433(2) -0.03642(11) 0.80446(8) 0.0331(4) Uani 1 1 d . H13 H 0.0382 -0.0061 0.7583 0.040 Uiso 1 1 calc R C14 C -0.0023(2) -0.12661(12) 0.81026(9) 0.0441(5) Uani 1 1 d . H14 H -0.0379 -0.1580 0.7680 0.053 Uiso 1 1 calc R C15 C 0.0038(2) -0.17115(11) 0.87712(9) 0.0392(4) Uani 1 1 d . H15 H -0.0264 -0.2333 0.8809 0.047 Uiso 1 1 calc R C16 C 0.05400(19) -0.12476(11) 0.93852(9) 0.0323(4) Uani 1 1 d . H16 H 0.0567 -0.1551 0.9848 0.039 Uiso 1 1 calc R C17 C 0.10061(16) -0.03427(10) 0.93351(8) 0.0242(3) Uani 1 1 d . H17 H 0.1350 -0.0029 0.9760 0.029 Uiso 1 1 calc R C18 C 0.33232(18) 0.21082(10) 0.91371(9) 0.0286(3) Uani 1 1 d . H18A H 0.3530 0.2321 0.8636 0.043 Uiso 1 1 calc R H18B H 0.4258 0.2075 0.9415 0.043 Uiso 1 1 calc R H18C H 0.2642 0.2537 0.9380 0.043 Uiso 1 1 calc R C19 C 0.68697(15) 0.01936(9) 0.58232(7) 0.0198(3) Uani 1 1 d . C20 C 0.90570(16) 0.03549(10) 0.50379(8) 0.0235(3) Uani 1 1 d . C21 C 0.8595(2) -0.03783(13) 0.44931(9) 0.0383(4) Uani 1 1 d . H21A H 0.8206 -0.0909 0.4761 0.057 Uiso 1 1 calc R H21B H 0.9462 -0.0563 0.4200 0.057 Uiso 1 1 calc R H21C H 0.7821 -0.0136 0.4167 0.057 Uiso 1 1 calc R C22 C 0.9668(2) 0.11779(12) 0.46306(11) 0.0446(5) Uani 1 1 d . H22A H 0.8915 0.1406 0.4285 0.067 Uiso 1 1 calc R H22B H 1.0566 0.1000 0.4358 0.067 Uiso 1 1 calc R H22C H 0.9918 0.1660 0.4985 0.067 Uiso 1 1 calc R C23 C 1.01547(18) 0.00047(12) 0.56066(9) 0.0365(4) Uani 1 1 d . H23A H 1.0355 0.0487 0.5968 0.055 Uiso 1 1 calc R H23B H 1.1087 -0.0169 0.5362 0.055 Uiso 1 1 calc R H23C H 0.9732 -0.0530 0.5857 0.055 Uiso 1 1 calc R N1 N 0.57149(12) 0.06935(7) 0.61354(6) 0.0181(2) Uani 1 1 d . O1 O 0.48987(13) -0.12232(7) 0.72644(6) 0.0347(3) Uani 1 1 d . O2 O 0.36910(11) -0.08025(7) 0.62346(6) 0.0262(2) Uani 1 1 d . O3 O 0.33050(10) 0.09707(6) 0.76774(5) 0.0201(2) Uani 1 1 d . O4 O 0.11493(11) 0.16483(7) 0.73494(5) 0.0259(2) Uani 1 1 d . O5 O 0.26489(10) 0.12155(6) 0.91087(5) 0.0203(2) Uani 1 1 d . O6 O 0.70076(12) -0.06215(7) 0.59050(6) 0.0277(2) Uani 1 1 d . O7 O 0.77334(11) 0.07379(7) 0.54137(5) 0.0234(2) Uani 1 1 d . F1 F 0.04209(10) 0.26128(6) 0.86659(5) 0.0316(2) Uani 1 1 d . F2 F -0.11028(9) 0.15007(6) 0.84681(5) 0.0300(2) Uani 1 1 d . F3 F -0.01175(10) 0.16734(6) 0.95383(4) 0.0314(2) Uani 1 1 d . loop_ _atom_site_aniso_label _atom_site_aniso_U_11 _atom_site_aniso_U_22 _atom_site_aniso_U_33 _atom_site_aniso_U_23 _atom_site_aniso_U_13 _atom_site_aniso_U_12 C1 0.0198(6) 0.0202(7) 0.0157(6) 0.0026(5) 0.0016(5) 0.0026(5) C2 0.0205(6) 0.0212(7) 0.0145(6) -0.0002(5) 0.0015(5) 0.0031(5) C3 0.0284(8) 0.0176(7) 0.0219(7) 0.0004(5) 0.0031(6) 0.0023(5) C4 0.0269(7) 0.0152(6) 0.0239(7) -0.0030(5) 0.0033(6) -0.0020(6) C5 0.0276(8) 0.0309(8) 0.0280(7) -0.0065(6) -0.0017(6) -0.0032(6) C6 0.0229(7) 0.0335(8) 0.0185(7) 0.0016(6) -0.0009(6) 0.0034(6) C7 0.0192(7) 0.0210(7) 0.0245(7) 0.0025(6) 0.0054(6) 0.0029(5) C8 0.0270(8) 0.0209(7) 0.0548(10) -0.0016(7) 0.0004(7) -0.0049(6) C9 0.0214(7) 0.0151(6) 0.0205(7) -0.0008(5) 0.0013(5) 0.0002(5) C10 0.0169(6) 0.0178(6) 0.0184(6) -0.0004(5) 0.0002(5) 0.0026(5) C11 0.0236(7) 0.0220(7) 0.0223(7) -0.0016(6) 0.0023(6) 0.0035(6) C12 0.0196(6) 0.0183(6) 0.0202(6) -0.0009(5) 0.0034(5) -0.0008(5) C13 0.0491(10) 0.0303(8) 0.0199(7) -0.0001(6) -0.0009(7) -0.0116(7) C14 0.0734(14) 0.0324(9) 0.0265(8) -0.0086(7) 0.0001(9) -0.0225(9) C15 0.0606(11) 0.0222(8) 0.0347(8) -0.0026(7) 0.0070(8) -0.0126(8) C16 0.0454(9) 0.0258(8) 0.0259(8) 0.0047(6) 0.0030(7) -0.0056(7) C17 0.0291(7) 0.0224(7) 0.0211(7) -0.0014(5) -0.0007(6) -0.0018(6) C18 0.0310(8) 0.0249(7) 0.0299(8) -0.0031(6) -0.0026(7) -0.0096(6) C19 0.0205(7) 0.0224(7) 0.0166(6) -0.0016(5) 0.0002(5) -0.0001(5) C20 0.0225(7) 0.0243(7) 0.0236(7) 0.0017(6) 0.0073(6) 0.0041(6) C21 0.0391(9) 0.0474(10) 0.0283(8) -0.0108(7) 0.0071(7) 0.0012(8) C22 0.0476(11) 0.0337(9) 0.0526(11) 0.0131(8) 0.0258(9) 0.0048(8) C23 0.0247(8) 0.0510(11) 0.0340(8) 0.0057(8) 0.0003(7) 0.0025(7) N1 0.0219(6) 0.0164(5) 0.0159(5) 0.0014(4) 0.0020(4) -0.0003(5) O1 0.0394(6) 0.0253(5) 0.0393(6) 0.0143(5) -0.0007(5) 0.0030(5) O2 0.0270(5) 0.0191(5) 0.0325(6) 0.0014(4) -0.0008(5) -0.0046(4) O3 0.0199(5) 0.0249(5) 0.0156(4) 0.0010(4) 0.0027(4) 0.0031(4) O4 0.0265(5) 0.0288(5) 0.0223(5) 0.0048(4) 0.0003(4) 0.0082(4) O5 0.0211(5) 0.0201(5) 0.0196(5) -0.0008(4) -0.0031(4) -0.0024(4) O6 0.0300(5) 0.0179(5) 0.0352(6) 0.0014(4) 0.0091(5) 0.0020(4) O7 0.0253(5) 0.0208(5) 0.0241(5) 0.0018(4) 0.0091(4) 0.0031(4) F1 0.0338(5) 0.0200(4) 0.0410(5) -0.0014(4) 0.0036(4) 0.0075(4) F2 0.0191(4) 0.0376(5) 0.0333(5) -0.0011(4) -0.0010(4) 0.0044(4) F3 0.0330(5) 0.0382(5) 0.0229(4) -0.0049(4) 0.0074(4) 0.0080(4) loop_ _atom_type_symbol _atom_type_description _atom_type_scat_dispersion_real _atom_type_scat_dispersion_imag _atom_type_scat_source C C 0.0033 0.0016 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' H H 0.0000 0.0000 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' N N 0.0061 0.0033 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' O O 0.0106 0.0060 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' F F 0.0171 0.0103 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' loop_ _geom_angle_atom_site_label_1 _geom_angle_atom_site_label_2 _geom_angle_atom_site_label_3 _geom_angle N1 C1 C7 115.41(11) N1 C1 C6 103.48(11) C7 C1 C6 116.49(11) N1 C1 C2 98.09(10) C7 C1 C2 111.50(11) C6 C1 C2 110.13(11) O3 C2 C3 114.86(11) O3 C2 C1 107.78(10) C3 C2 C1 103.42(11) O3 C2 H2 110.2 C3 C2 H2 110.2 C1 C2 H2 110.2 C4 C3 C2 102.08(10) C4 C3 H3A 111.4 C2 C3 H3A 111.4 C4 C3 H3B 111.4 C2 C3 H3B 111.4 H3A C3 H3B 109.2 N1 C4 C3 100.15(11) N1 C4 C5 102.47(11) C3 C4 C5 109.17(12) N1 C4 H4 114.5 C3 C4 H4 114.5 C5 C4 H4 114.5 C4 C5 C6 102.76(11) C4 C5 H5A 111.2 C6 C5 H5A 111.2 C4 C5 H5B 111.2 C6 C5 H5B 111.2 H5A C5 H5B 109.1 C1 C6 C5 102.04(11) C1 C6 H6A 111.4 C5 C6 H6A 111.4 C1 C6 H6B 111.4 C5 C6 H6B 111.4 H6A C6 H6B 109.2 O1 C7 O2 124.70(14) O1 C7 C1 124.38(13) O2 C7 C1 110.71(11) O2 C8 H8A 109.5 O2 C8 H8B 109.5 H8A C8 H8B 109.5 O2 C8 H8C 109.5 H8A C8 H8C 109.5 H8B C8 H8C 109.5 O4 C9 O3 125.06(12) O4 C9 C10 125.01(12) O3 C9 C10 109.81(11) O5 C10 C12 107.60(10) O5 C10 C9 112.95(10) C12 C10 C9 108.47(11) O5 C10 C11 110.02(10) C12 C10 C11 108.90(11) C9 C10 C11 108.83(11) F2 C11 F3 107.18(11) F2 C11 F1 107.17(11) F3 C11 F1 106.80(11) F2 C11 C10 112.48(11) F3 C11 C10 110.11(11) F1 C11 C10 112.78(11) C13 C12 C17 119.45(13) C13 C12 C10 121.37(13) C17 C12 C10 119.16(12) C14 C13 C12 120.40(14) C14 C13 H13 119.8 C12 C13 H13 119.8 C15 C14 C13 120.33(15) C15 C14 H14 119.8 C13 C14 H14 119.8 C14 C15 C16 119.50(15) C14 C15 H15 120.2 C16 C15 H15 120.2 C15 C16 C17 120.83(14) C15 C16 H16 119.6 C17 C16 H16 119.6 C16 C17 C12 119.48(13) C16 C17 H17 120.3 C12 C17 H17 120.3 O5 C18 H18A 109.5 O5 C18 H18B 109.5 H18A C18 H18B 109.5 O5 C18 H18C 109.5 H18A C18 H18C 109.5 H18B C18 H18C 109.5 O6 C19 O7 126.62(13) O6 C19 N1 123.06(13) O7 C19 N1 110.28(11) O7 C20 C22 102.44(11) O7 C20 C23 109.54(12) C22 C20 C23 111.47(14) O7 C20 C21 110.45(12) C22 C20 C21 109.94(14) C23 C20 C21 112.55(13) C20 C21 H21A 109.5 C20 C21 H21B 109.5 H21A C21 H21B 109.5 C20 C21 H21C 109.5 H21A C21 H21C 109.5 H21B C21 H21C 109.5 C20 C22 H22A 109.5 C20 C22 H22B 109.5 H22A C22 H22B 109.5 C20 C22 H22C 109.5 H22A C22 H22C 109.5 H22B C22 H22C 109.5 C20 C23 H23A 109.5 C20 C23 H23B 109.5 H23A C23 H23B 109.5 C20 C23 H23C 109.5 H23A C23 H23C 109.5 H23B C23 H23C 109.5 C19 N1 C1 115.69(11) C19 N1 C4 120.38(11) C1 N1 C4 96.58(10) C7 O2 C8 115.65(12) C9 O3 C2 115.03(10) C10 O5 C18 116.73(10) C19 O7 C20 119.79(11) loop_ _geom_bond_atom_site_label_1 _geom_bond_atom_site_label_2 _geom_bond_distance C1 N1 1.4793(17) C1 C7 1.5130(19) C1 C6 1.539(2) C1 C2 1.5431(18) C2 O3 1.4520(15) C2 C3 1.5414(19) C2 H2 1.0000 C3 C4 1.531(2) C3 H3A 0.9900 C3 H3B 0.9900 C4 N1 1.4960(17) C4 C5 1.538(2) C4 H4 1.0000 C5 C6 1.560(2) C5 H5A 0.9900 C5 H5B 0.9900 C6 H6A 0.9900 C6 H6B 0.9900 C7 O1 1.1991(17) C7 O2 1.3372(18) C8 O2 1.4364(17) C8 H8A 0.9800 C8 H8B 0.9800 C8 H8C 0.9800 C9 O4 1.1992(16) C9 O3 1.3390(16) C9 C10 1.5450(18) C10 O5 1.4036(16) C10 C12 1.5313(18) C10 C11 1.5482(18) C11 F2 1.3342(17) C11 F3 1.3378(16) C11 F1 1.3423(17) C12 C13 1.388(2) C12 C17 1.3919(19) C13 C14 1.384(2) C13 H13 0.9500 C14 C15 1.379(2) C14 H14 0.9500 C15 C16 1.381(2) C15 H15 0.9500 C16 C17 1.390(2) C16 H16 0.9500 C17 H17 0.9500 C18 O5 1.4390(17) C18 H18A 0.9800 C18 H18B 0.9800 C18 H18C 0.9800 C19 O6 1.2069(17) C19 O7 1.3365(16) C19 N1 1.3888(17) C20 O7 1.4796(16) C20 C22 1.515(2) C20 C23 1.516(2) C20 C21 1.516(2) C21 H21A 0.9800 C21 H21B 0.9800 C21 H21C 0.9800 C22 H22A 0.9800 C22 H22B 0.9800 C22 H22C 0.9800 C23 H23A 0.9800 C23 H23B 0.9800 C23 H23C 0.9800