#------------------------------------------------------------------------------ #$Date: 2016-03-22 11:47:27 +0200 (Tue, 22 Mar 2016) $ #$Revision: 178916 $ #$URL: file:///home/coder/svn-repositories/cod/cif/4/11/45/4114571.cif $ #------------------------------------------------------------------------------ # # This file is available in the Crystallography Open Database (COD), # http://www.crystallography.net/ # # All data on this site have been placed in the public domain by the # contributors. # data_4114571 loop_ _publ_author_name 'Yoshihiko Yamamoto' 'Hideyuki Takagishi' 'Kenji Itoh' _publ_section_title ; Ruthenium-Catalyzed Cycloaddition of 1,6-Diynes with Isothiocyanates and Carbon Disulfide: First Transition-Metal Catalyzed [2 + 2 + 2] Cocyclotrimerization Involving CS Double Bond ; _journal_name_full 'Journal of the American Chemical Society' _journal_page_first 28 _journal_page_last 29 _journal_paper_doi 10.1021/ja016510q _journal_volume 124 _journal_year 2002 _chemical_formula_sum 'C15 H17 N O6 S' _chemical_formula_weight 339.36 _chemical_name_systematic ; ? ; _space_group_IT_number 14 _symmetry_cell_setting monoclinic _symmetry_space_group_name_Hall '-P 2yn' _symmetry_space_group_name_H-M 'P 1 21/n 1' _atom_sites_solution_hydrogens geom _atom_sites_solution_primary direct _atom_sites_solution_secondary difmap _audit_creation_method SHELXL-97 _cell_angle_alpha 90.00 _cell_angle_beta 90.057(3) _cell_angle_gamma 90.00 _cell_formula_units_Z 4 _cell_length_a 6.9808(10) _cell_length_b 11.2342(16) _cell_length_c 20.146(3) _cell_measurement_temperature 293(2) _cell_volume 1579.9(4) _computing_cell_refinement 'Bruker SMART' _computing_data_collection 'Bruker SMART' _computing_data_reduction 'Bruker SHELXTL' _computing_molecular_graphics 'Bruker SHELXTL' _computing_publication_material 'Bruker SHELXTL' _computing_structure_refinement 'SHELXL-97 (Sheldrick, 1997)' _computing_structure_solution 'SHELXS-97 (Sheldrick, 1990)' _diffrn_ambient_temperature 293(2) _diffrn_measured_fraction_theta_full 1.000 _diffrn_measured_fraction_theta_max 1.000 _diffrn_measurement_device_type 'CCD area detector' _diffrn_measurement_method 'phi and omega scans' _diffrn_radiation_monochromator graphite _diffrn_radiation_source 'fine-focus sealed tube' _diffrn_radiation_type MoK\a _diffrn_radiation_wavelength 0.71073 _diffrn_reflns_av_R_equivalents 0.0531 _diffrn_reflns_av_sigmaI/netI 0.0376 _diffrn_reflns_limit_h_max 5 _diffrn_reflns_limit_h_min -7 _diffrn_reflns_limit_k_max 12 _diffrn_reflns_limit_k_min -12 _diffrn_reflns_limit_l_max 22 _diffrn_reflns_limit_l_min -21 _diffrn_reflns_number 7657 _diffrn_reflns_theta_full 23.27 _diffrn_reflns_theta_max 23.27 _diffrn_reflns_theta_min 2.02 _exptl_absorpt_coefficient_mu 0.235 _exptl_absorpt_correction_type 'empirical (SADABS) ' _exptl_crystal_density_diffrn 1.427 _exptl_crystal_F_000 712 _exptl_crystal_size_max 0.30 _exptl_crystal_size_mid 0.30 _exptl_crystal_size_min 0.30 _refine_diff_density_max 0.299 _refine_diff_density_min -0.586 _refine_diff_density_rms 0.126 _refine_ls_extinction_method none _refine_ls_goodness_of_fit_ref 0.637 _refine_ls_hydrogen_treatment mixed _refine_ls_matrix_type full _refine_ls_number_parameters 211 _refine_ls_number_reflns 2279 _refine_ls_number_restraints 0 _refine_ls_restrained_S_all 0.637 _refine_ls_R_factor_all 0.0592 _refine_ls_R_factor_gt 0.0541 _refine_ls_shift/su_max 0.202 _refine_ls_shift/su_mean 0.024 _refine_ls_structure_factor_coef Fsqd _refine_ls_weighting_details 'calc w=1/[\s^2^(Fo^2^)+(0.1808P)^2^+1.9580P] where P=(Fo^2^+2Fc^2^)/3' _refine_ls_weighting_scheme calc _refine_ls_wR_factor_gt 0.1460 _refine_ls_wR_factor_ref 0.1556 _reflns_number_gt 2005 _reflns_number_total 2279 _reflns_threshold_expression >2sigma(I) _cod_data_source_file ja016510q_s3.cif _cod_data_source_block yamamot _cod_database_code 4114571 loop_ _symmetry_equiv_pos_as_xyz 'x, y, z' '-x+1/2, y+1/2, -z+1/2' '-x, -y, -z' 'x-1/2, -y-1/2, z-1/2' loop_ _atom_site_label _atom_site_type_symbol _atom_site_fract_x _atom_site_fract_y _atom_site_fract_z _atom_site_U_iso_or_equiv _atom_site_adp_type _atom_site_occupancy _atom_site_symmetry_multiplicity _atom_site_calc_flag _atom_site_refinement_flags S1 S 0.15621(10) 0.48005(5) 0.25882(3) 0.0399(3) Uani 1 1 d . O2 O 0.6134(3) 0.28337(15) 0.16627(10) 0.0463(5) Uani 1 1 d . N1 N 0.3428(3) 0.27732(18) 0.22376(11) 0.0413(6) Uani 1 1 d . O1 O 0.4797(3) 0.45757(17) 0.19364(11) 0.0542(6) Uani 1 1 d . O4 O -0.5526(3) 0.12732(18) 0.42734(12) 0.0576(6) Uani 1 1 d . C4 C -0.3484(4) 0.2840(2) 0.39795(12) 0.0368(6) Uani 1 1 d . O5 O -0.1477(3) 0.2039(2) 0.48518(11) 0.0670(7) Uani 1 1 d . O6 O -0.2542(4) 0.38839(18) 0.49452(10) 0.0637(7) Uani 1 1 d . C12 C -0.5509(4) 0.2429(2) 0.41452(12) 0.0406(6) Uani 1 1 d . C14 C -0.2355(4) 0.2858(2) 0.46372(13) 0.0399(6) Uani 1 1 d . C9 C 0.4757(4) 0.3493(2) 0.19482(12) 0.0384(6) Uani 1 1 d . O3 O -0.6879(3) 0.3056(2) 0.41579(13) 0.0669(7) Uani 1 1 d . C8 C 0.1928(4) 0.3255(2) 0.25311(12) 0.0371(6) Uani 1 1 d . C6 C -0.1040(4) 0.2814(2) 0.31496(12) 0.0364(6) Uani 1 1 d . C1 C -0.0558(4) 0.4938(2) 0.30176(13) 0.0397(6) Uani 1 1 d . H1 H -0.1006 0.5704 0.3098 0.048 Uiso 1 1 calc R C5 C -0.2475(4) 0.2011(2) 0.34777(14) 0.0430(7) Uani 1 1 d . H5A H -0.1845 0.1355 0.3702 0.052 Uiso 1 1 calc R H5B H -0.3378 0.1695 0.3157 0.052 Uiso 1 1 calc R C7 C 0.0561(4) 0.2472(2) 0.28244(13) 0.0402(6) Uani 1 1 d . H7 H 0.0790 0.1659 0.2789 0.048 Uiso 1 1 calc R C2 C -0.1616(4) 0.4027(2) 0.32452(12) 0.0356(6) Uani 1 1 d . C3 C -0.3456(4) 0.4067(2) 0.36311(13) 0.0395(6) Uani 1 1 d . H3A H -0.4550 0.4160 0.3339 0.047 Uiso 1 1 calc R H3B H -0.3448 0.4711 0.3952 0.047 Uiso 1 1 calc R C13 C -0.7356(4) 0.0738(3) 0.44305(18) 0.0630(9) Uani 1 1 d . H13A H -0.8080 0.1270 0.4706 0.094 Uiso 1 1 calc R H13B H -0.7152 0.0002 0.4662 0.094 Uiso 1 1 calc R H13C H -0.8051 0.0588 0.4028 0.094 Uiso 1 1 calc R C11 C 0.8964(5) 0.2612(3) 0.10229(18) 0.0651(9) Uani 1 1 d . H11A H 0.9424 0.2086 0.1363 0.098 Uiso 1 1 calc R H11B H 1.0026 0.3025 0.0827 0.098 Uiso 1 1 calc R H11C H 0.8312 0.2159 0.0688 0.098 Uiso 1 1 calc R C10 C 0.7607(4) 0.3496(3) 0.13205(15) 0.0509(8) Uani 1 1 d . H10A H 0.8280 0.4010 0.1629 0.061 Uiso 1 1 calc R H10B H 0.7043 0.3986 0.0975 0.061 Uiso 1 1 calc R C15 C -0.1542(6) 0.4019(4) 0.55715(16) 0.0770(11) Uani 1 1 d . H15A H -0.1957 0.3411 0.5874 0.116 Uiso 1 1 calc R H15B H -0.1819 0.4788 0.5756 0.116 Uiso 1 1 calc R H15C H -0.0188 0.3946 0.5500 0.116 Uiso 1 1 calc R loop_ _atom_site_aniso_label _atom_site_aniso_U_11 _atom_site_aniso_U_22 _atom_site_aniso_U_33 _atom_site_aniso_U_23 _atom_site_aniso_U_13 _atom_site_aniso_U_12 S1 0.0504(5) 0.0236(4) 0.0459(5) 0.0023(3) 0.0060(3) -0.0005(3) O2 0.0540(12) 0.0296(10) 0.0554(12) -0.0010(8) 0.0164(9) -0.0030(8) N1 0.0511(14) 0.0246(11) 0.0483(13) -0.0011(9) 0.0107(11) -0.0005(10) O1 0.0645(13) 0.0295(11) 0.0688(14) 0.0052(9) 0.0211(11) -0.0013(9) O4 0.0498(12) 0.0407(11) 0.0824(15) 0.0067(10) 0.0141(11) -0.0049(9) C4 0.0414(14) 0.0306(13) 0.0383(14) 0.0005(10) 0.0043(11) 0.0022(11) O5 0.0773(15) 0.0590(14) 0.0649(14) 0.0072(11) -0.0133(12) 0.0214(12) O6 0.0922(17) 0.0485(12) 0.0505(12) -0.0118(10) -0.0245(12) 0.0116(11) C12 0.0475(15) 0.0393(15) 0.0349(14) -0.0032(11) 0.0008(12) -0.0008(13) C14 0.0396(14) 0.0378(15) 0.0424(14) 0.0068(12) 0.0036(12) -0.0011(12) C9 0.0509(16) 0.0281(14) 0.0362(13) -0.0008(10) 0.0011(12) 0.0000(12) O3 0.0478(12) 0.0522(14) 0.1006(19) 0.0096(12) 0.0076(12) 0.0079(11) C8 0.0499(15) 0.0249(13) 0.0367(13) 0.0006(10) -0.0021(12) -0.0007(12) C6 0.0492(15) 0.0269(13) 0.0330(13) -0.0034(10) 0.0013(11) -0.0016(11) C1 0.0519(16) 0.0263(13) 0.0409(14) -0.0002(11) 0.0001(12) 0.0057(12) C5 0.0497(15) 0.0311(14) 0.0484(16) -0.0026(12) 0.0081(13) -0.0029(12) C7 0.0527(16) 0.0226(12) 0.0455(15) -0.0018(11) 0.0051(13) -0.0001(11) C2 0.0458(15) 0.0294(13) 0.0315(13) 0.0006(10) -0.0014(11) 0.0024(11) C3 0.0494(15) 0.0315(14) 0.0377(14) -0.0003(11) -0.0016(12) 0.0046(12) C13 0.0572(19) 0.0561(19) 0.076(2) 0.0026(17) 0.0096(16) -0.0192(16) C11 0.067(2) 0.062(2) 0.066(2) -0.0054(17) 0.0244(17) -0.0008(17) C10 0.0587(17) 0.0420(16) 0.0521(17) 0.0012(13) 0.0164(14) -0.0078(14) C15 0.103(3) 0.077(2) 0.0513(19) -0.0086(17) -0.030(2) -0.004(2) loop_ _atom_type_symbol _atom_type_description _atom_type_scat_dispersion_real _atom_type_scat_dispersion_imag _atom_type_scat_source C C 0.0033 0.0016 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' H H 0.0000 0.0000 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' N N 0.0061 0.0033 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' O O 0.0106 0.0060 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' S S 0.1246 0.1234 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' loop_ _geom_angle_atom_site_label_1 _geom_angle_atom_site_label_2 _geom_angle_atom_site_label_3 _geom_angle C1 S1 C8 104.26(12) C9 O2 C10 115.5(2) C8 N1 C9 119.3(2) C12 O4 C13 117.3(2) C12 C4 C14 106.8(2) C12 C4 C5 112.6(2) C14 C4 C5 109.7(2) C12 C4 C3 112.4(2) C14 C4 C3 111.8(2) C5 C4 C3 103.5(2) C14 O6 C15 117.0(3) O3 C12 O4 124.7(3) O3 C12 C4 124.9(3) O4 C12 C4 110.4(2) O5 C14 O6 124.0(3) O5 C14 C4 124.5(2) O6 C14 C4 111.5(2) O1 C9 O2 121.8(2) O1 C9 N1 128.1(2) O2 C9 N1 110.1(2) N1 C8 C7 117.6(2) N1 C8 S1 123.39(19) C7 C8 S1 119.0(2) C7 C6 C2 124.5(2) C7 C6 C5 126.5(2) C2 C6 C5 109.0(2) C2 C1 S1 125.2(2) C6 C5 C4 103.3(2) C6 C7 C8 125.4(2) C1 C2 C6 121.6(2) C1 C2 C3 128.7(2) C6 C2 C3 109.7(2) C2 C3 C4 102.7(2) O2 C10 C11 107.5(2) loop_ _geom_bond_atom_site_label_1 _geom_bond_atom_site_label_2 _geom_bond_distance S1 C1 1.722(3) S1 C8 1.758(3) O2 C9 1.343(3) O2 C10 1.445(3) N1 C8 1.319(3) N1 C9 1.363(3) O1 C9 1.216(3) O4 C12 1.324(3) O4 C13 1.447(3) C4 C12 1.524(4) C4 C14 1.541(4) C4 C5 1.545(4) C4 C3 1.546(3) O5 C14 1.187(3) O6 C14 1.315(3) O6 C15 1.449(4) C12 O3 1.188(3) C8 C7 1.427(4) C6 C7 1.352(4) C6 C2 1.434(3) C6 C5 1.501(4) C1 C2 1.343(4) C2 C3 1.503(4) C11 C10 1.498(4)