#------------------------------------------------------------------------------ #$Date: 2012-10-15 16:15:19 +0300 (Mon, 15 Oct 2012) $ #$Revision: 68032 $ #$URL: file:///home/coder/svn-repositories/cod/cif/4/11/46/4114691.cif $ #------------------------------------------------------------------------------ # # This file is available in the Crystallography Open Database (COD), # http://www.crystallography.net/ # # All data on this site have been placed in the public domain by the # contributors. # data_4114691 loop_ _publ_author_name 'Haimei Chen' 'John A. Parkinson' 'Simon Parsons' 'Robert A. Coxall' 'Robert O. Gould' 'Peter J. Sadler' _publ_section_title ; Organometallic Ruthenium(II) Diamine Anticancer Complexes: Arene-Nucleobase Stacking and Stereospecific Hydrogen-Bonding in Guanine Adducts ; _journal_name_full 'Journal of the American Chemical Society' _journal_page_first 3064 _journal_page_last 3082 _journal_volume 124 _journal_year 2002 _chemical_formula_moiety '[Ru(C14H14)(H2NCH2CH2NH2)Cl]PF6' _chemical_formula_sum 'C16 H22 Cl F6 N2 P Ru' _chemical_formula_weight 523.85 _chemical_name_systematic ; ? ; _space_group_IT_number 14 _symmetry_cell_setting monoclinic _symmetry_space_group_name_Hall '-P 2yn' _symmetry_space_group_name_H-M 'P 1 21/n 1' _atom_sites_solution_hydrogens difmap _atom_sites_solution_primary Patterson _atom_sites_solution_secondary difmap _audit_creation_method SHELXL-97 _cell_angle_alpha 90.00 _cell_angle_beta 103.854(3) _cell_angle_gamma 90.00 _cell_formula_units_Z 4 _cell_length_a 12.171(3) _cell_length_b 8.4733(18) _cell_length_c 18.946(4) _cell_measurement_reflns_used 1001 _cell_measurement_temperature 150(2) _cell_measurement_theta_max 26 _cell_measurement_theta_min 2.5 _cell_volume 1897.0(7) _computing_cell_refinement 'Bruker SMART' _computing_data_collection 'Bruker SMART' _computing_data_reduction 'Bruker SHELXTL' _computing_molecular_graphics 'Bruker SHELXTL' _computing_publication_material 'Bruker SHELXTL' _computing_structure_refinement 'SHELXL-97 (Sheldrick, 1997)' _computing_structure_solution DIRDIF _diffrn_ambient_temperature 150(2) _diffrn_measured_fraction_theta_full 0.997 _diffrn_measured_fraction_theta_max 0.997 _diffrn_measurement_device_type 'CCD area detector' _diffrn_measurement_method 'phi and omega scans' _diffrn_radiation_monochromator graphite _diffrn_radiation_source 'fine-focus sealed tube' _diffrn_radiation_type MoK\a _diffrn_radiation_wavelength 0.71073 _diffrn_reflns_av_R_equivalents 0.0159 _diffrn_reflns_av_sigmaI/netI 0.0186 _diffrn_reflns_limit_h_max 15 _diffrn_reflns_limit_h_min -14 _diffrn_reflns_limit_k_max 6 _diffrn_reflns_limit_k_min -10 _diffrn_reflns_limit_l_max 22 _diffrn_reflns_limit_l_min -23 _diffrn_reflns_number 10528 _diffrn_reflns_theta_full 26.37 _diffrn_reflns_theta_max 26.37 _diffrn_reflns_theta_min 1.81 _exptl_absorpt_coefficient_mu 1.112 _exptl_absorpt_correction_T_max 0.862 _exptl_absorpt_correction_T_min 0.637 _exptl_absorpt_correction_type Sadabs _exptl_crystal_colour Orange _exptl_crystal_density_diffrn 1.834 _exptl_crystal_description lath _exptl_crystal_F_000 1048 _exptl_crystal_size_max 0.29 _exptl_crystal_size_mid 0.19 _exptl_crystal_size_min 0.09 _refine_diff_density_max 0.722 _refine_diff_density_min -0.371 _refine_diff_density_rms 0.062 _refine_ls_extinction_method none _refine_ls_goodness_of_fit_ref 1.062 _refine_ls_hydrogen_treatment refined _refine_ls_matrix_type full _refine_ls_number_parameters 332 _refine_ls_number_reflns 3872 _refine_ls_number_restraints 0 _refine_ls_restrained_S_all 1.062 _refine_ls_R_factor_all 0.0250 _refine_ls_R_factor_gt 0.0230 _refine_ls_shift/su_max 0.003 _refine_ls_shift/su_mean 0.000 _refine_ls_structure_factor_coef Fsqd _refine_ls_weighting_details 'calc w=1/[\s^2^(Fo^2^)+(0.0417P)^2^+0.0000P] where P=(Fo^2^+2Fc^2^)/3' _refine_ls_weighting_scheme calc _refine_ls_wR_factor_gt 0.0616 _refine_ls_wR_factor_ref 0.0625 _reflns_number_gt 3513 _reflns_number_total 3872 _reflns_threshold_expression >2sigma(I) _[local]_cod_data_source_file ja017482e_s2.cif _[local]_cod_data_source_block ruhc11 _cod_database_code 4114691 loop_ _symmetry_equiv_pos_as_xyz 'x, y, z' '-x+1/2, y+1/2, -z+1/2' '-x, -y, -z' 'x-1/2, -y-1/2, z-1/2' loop_ _atom_site_label _atom_site_type_symbol _atom_site_fract_x _atom_site_fract_y _atom_site_fract_z _atom_site_U_iso_or_equiv _atom_site_adp_type _atom_site_occupancy _atom_site_symmetry_multiplicity _atom_site_calc_flag Ru1 Ru 0.189020(11) 0.213366(17) 0.939941(8) 0.02439(7) Uani 1 1 d Cl1 Cl 0.22984(4) -0.01915(6) 1.01443(3) 0.03397(12) Uani 1 1 d N1B N 0.23647(14) 0.0720(2) 0.85949(9) 0.0280(3) Uani 1 1 d H1BA H 0.2412(17) -0.019(3) 0.8746(12) 0.028(6) Uiso 1 1 d H1BB H 0.192(2) 0.073(3) 0.8210(14) 0.048(7) Uiso 1 1 d C1B C 0.34973(16) 0.1192(3) 0.85107(10) 0.0294(4) Uani 1 1 d H1BC H 0.3419(19) 0.209(2) 0.8286(13) 0.026(6) Uiso 1 1 d H1BD H 0.3780(17) 0.044(3) 0.8249(11) 0.030(5) Uiso 1 1 d C2B C 0.42392(17) 0.1321(3) 0.92624(11) 0.0300(4) Uani 1 1 d H2BC H 0.4944(19) 0.170(2) 0.9257(11) 0.031(5) Uiso 1 1 d H2BD H 0.4252(17) 0.047(3) 0.9481(12) 0.030(6) Uiso 1 1 d N2B N 0.36834(14) 0.2396(2) 0.96853(10) 0.0287(4) Uani 1 1 d H2BA H 0.389(2) 0.227(3) 1.0123(15) 0.040(7) Uiso 1 1 d H2BB H 0.3857(18) 0.331(3) 0.9633(12) 0.030(6) Uiso 1 1 d C1A C 0.14307(16) 0.4159(2) 1.00187(11) 0.0304(4) Uani 1 1 d C2A C 0.16666(18) 0.4653(3) 0.93466(12) 0.0340(4) Uani 1 1 d H2A H 0.2274(18) 0.539(3) 0.9380(11) 0.033(6) Uiso 1 1 d C3A C 0.10948(18) 0.4013(3) 0.86783(12) 0.0373(5) Uani 1 1 d H3A H 0.126(2) 0.434(3) 0.8251(14) 0.051(7) Uiso 1 1 d C4A C 0.02922(18) 0.2807(3) 0.86639(13) 0.0385(5) Uani 1 1 d H4A H -0.003(2) 0.227(3) 0.8204(15) 0.047(7) Uiso 1 1 d C5A C 0.00607(17) 0.2278(3) 0.93127(13) 0.0346(5) Uani 1 1 d H5A H -0.0466(19) 0.139(3) 0.9271(12) 0.041(6) Uiso 1 1 d C6A C 0.06226(17) 0.2970(2) 0.99961(12) 0.0311(4) Uani 1 1 d C7A C 0.0362(2) 0.2344(3) 1.06745(14) 0.0396(5) Uani 1 1 d H7AA H -0.047(2) 0.228(3) 1.0619(15) 0.054(7) Uiso 1 1 d H7AB H 0.060(2) 0.132(3) 1.0757(13) 0.049(7) Uiso 1 1 d C8A C 0.09006(18) 0.3227(3) 1.13554(12) 0.0362(5) Uani 1 1 d C9A C 0.16714(17) 0.4351(3) 1.13800(11) 0.0370(5) Uani 1 1 d C10A C 0.20637(18) 0.4884(3) 1.07251(12) 0.0368(5) Uani 1 1 d H10A H 0.2002(18) 0.605(3) 1.0676(12) 0.041(6) Uiso 1 1 d H10B H 0.2867(18) 0.463(2) 1.0819(11) 0.032(5) Uiso 1 1 d C11A C 0.0499(2) 0.2733(3) 1.20092(15) 0.0526(7) Uani 1 1 d H11A H 0.059(2) 0.161(3) 1.2062(14) 0.051(7) Uiso 1 1 d H11B H -0.034(3) 0.274(3) 1.1881(15) 0.063(8) Uiso 1 1 d C12A C 0.1024(3) 0.3630(5) 1.26792(15) 0.0668(9) Uani 1 1 d H12A H 0.086(3) 0.345(4) 1.3111(19) 0.092(11) Uiso 1 1 d C13A C 0.1783(3) 0.4737(5) 1.27018(15) 0.0718(10) Uani 1 1 d H13A H 0.208(3) 0.539(4) 1.3117(18) 0.078(10) Uiso 1 1 d C14A C 0.2213(2) 0.5211(4) 1.20655(14) 0.0525(7) Uani 1 1 d H12A H 0.310(3) 0.505(4) 1.2162(17) 0.090(11) Uiso 1 1 d H12B H 0.217(2) 0.644(4) 1.1975(15) 0.071(9) Uiso 1 1 d P1 P 0.07475(4) 0.14059(6) -0.34494(3) 0.02881(12) Uani 1 1 d F1 F 0.01827(13) 0.05375(18) -0.28850(8) 0.0590(4) Uani 1 1 d F2 F 0.13391(16) 0.22742(17) -0.40050(9) 0.0617(4) Uani 1 1 d F3 F 0.13450(13) 0.25977(16) -0.28192(7) 0.0505(4) Uani 1 1 d F4 F 0.01636(12) 0.02132(16) -0.40774(7) 0.0544(4) Uani 1 1 d F5 F -0.02946(13) 0.25683(18) -0.36730(8) 0.0597(4) Uani 1 1 d F6 F 0.18023(11) 0.02388(16) -0.32235(8) 0.0532(4) Uani 1 1 d loop_ _atom_site_aniso_label _atom_site_aniso_U_11 _atom_site_aniso_U_22 _atom_site_aniso_U_33 _atom_site_aniso_U_23 _atom_site_aniso_U_13 _atom_site_aniso_U_12 Ru1 0.02552(10) 0.02422(11) 0.02367(10) -0.00097(5) 0.00636(6) -0.00021(5) Cl1 0.0346(2) 0.0354(3) 0.0325(2) 0.0089(2) 0.00910(19) -0.00082(19) N1B 0.0313(8) 0.0270(9) 0.0228(8) 0.0000(7) 0.0007(7) 0.0043(7) C1B 0.0359(10) 0.0277(10) 0.0266(9) 0.0024(9) 0.0112(8) 0.0069(8) C2B 0.0288(10) 0.0307(11) 0.0308(10) 0.0023(9) 0.0075(8) 0.0025(8) N2B 0.0311(8) 0.0290(10) 0.0257(9) -0.0016(7) 0.0061(7) -0.0048(7) C1A 0.0319(9) 0.0250(10) 0.0380(10) -0.0050(8) 0.0159(8) -0.0003(8) C2A 0.0373(10) 0.0249(10) 0.0448(12) 0.0019(9) 0.0195(9) 0.0028(9) C3A 0.0400(11) 0.0367(12) 0.0371(11) 0.0091(10) 0.0133(9) 0.0155(9) C4A 0.0327(11) 0.0417(13) 0.0381(12) -0.0052(10) 0.0024(9) 0.0135(9) C5A 0.0255(10) 0.0309(11) 0.0485(13) -0.0080(9) 0.0108(9) 0.0004(8) C6A 0.0291(10) 0.0270(10) 0.0408(11) -0.0065(8) 0.0155(9) 0.0001(7) C7A 0.0471(13) 0.0308(12) 0.0488(14) -0.0045(10) 0.0272(11) -0.0057(10) C8A 0.0376(11) 0.0383(11) 0.0374(11) 0.0026(9) 0.0180(9) 0.0118(9) C9A 0.0353(10) 0.0401(12) 0.0365(11) -0.0058(9) 0.0101(9) 0.0112(9) C10A 0.0365(11) 0.0325(12) 0.0449(12) -0.0122(10) 0.0164(9) -0.0063(9) C11A 0.0564(16) 0.0635(19) 0.0456(14) 0.0187(13) 0.0276(12) 0.0245(13) C12A 0.073(2) 0.097(3) 0.0374(14) 0.0098(15) 0.0262(14) 0.0324(19) C13A 0.0672(19) 0.112(3) 0.0336(14) -0.0177(16) 0.0064(13) 0.0338(19) C14A 0.0416(13) 0.0692(19) 0.0430(13) -0.0174(13) 0.0025(10) 0.0094(12) P1 0.0345(3) 0.0275(3) 0.0232(2) 0.0010(2) 0.00462(19) 0.0037(2) F1 0.0700(9) 0.0618(9) 0.0540(9) 0.0043(7) 0.0317(8) -0.0128(7) F2 0.0942(12) 0.0470(9) 0.0568(9) 0.0108(7) 0.0433(9) 0.0005(8) F3 0.0669(9) 0.0379(7) 0.0375(7) -0.0050(6) -0.0058(7) -0.0030(7) F4 0.0647(9) 0.0469(8) 0.0433(7) -0.0193(6) -0.0033(6) 0.0036(7) F5 0.0625(9) 0.0670(9) 0.0415(8) -0.0099(7) -0.0038(7) 0.0363(8) F6 0.0477(8) 0.0460(8) 0.0618(9) 0.0062(7) 0.0050(7) 0.0178(6) loop_ _atom_type_symbol _atom_type_description _atom_type_scat_dispersion_real _atom_type_scat_dispersion_imag _atom_type_scat_source C C 0.0033 0.0016 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' H H 0.0000 0.0000 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' N N 0.0061 0.0033 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' F F 0.0171 0.0103 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' P P 0.1023 0.0942 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' Cl Cl 0.1484 0.1585 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' Ru Ru -1.2594 0.8363 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' loop_ _geom_angle_atom_site_label_1 _geom_angle_atom_site_label_2 _geom_angle_atom_site_label_3 _geom_angle N1B Ru1 N2B 78.66(7) N1B Ru1 C2A 125.39(7) N2B Ru1 C2A 91.08(8) N1B Ru1 C3A 96.84(8) N2B Ru1 C3A 111.03(8) C2A Ru1 C3A 37.80(8) N1B Ru1 C4A 92.47(8) N2B Ru1 C4A 146.92(9) C2A Ru1 C4A 68.09(8) C3A Ru1 C4A 37.81(8) N1B Ru1 C5A 115.00(7) N2B Ru1 C5A 166.29(8) C2A Ru1 C5A 80.02(8) C3A Ru1 C5A 67.70(8) C4A Ru1 C5A 37.28(9) N1B Ru1 C1A 163.58(7) N2B Ru1 C1A 99.03(7) C2A Ru1 C1A 38.19(7) C3A Ru1 C1A 68.60(8) C4A Ru1 C1A 80.60(8) C5A Ru1 C1A 67.56(7) N1B Ru1 C6A 151.74(7) N2B Ru1 C6A 128.86(7) C2A Ru1 C6A 67.30(7) C3A Ru1 C6A 80.09(8) C4A Ru1 C6A 67.80(8) C5A Ru1 C6A 37.82(8) C1A Ru1 C6A 36.64(7) N1B Ru1 Cl1 84.59(5) N2B Ru1 Cl1 83.18(6) C2A Ru1 Cl1 147.81(6) C3A Ru1 Cl1 165.75(6) C4A Ru1 Cl1 128.09(7) C5A Ru1 Cl1 98.79(6) C1A Ru1 Cl1 111.42(6) C6A Ru1 Cl1 91.92(6) C1B N1B Ru1 110.19(12) N1B C1B C2B 106.40(16) N2B C2B C1B 108.06(16) C2B N2B Ru1 111.80(12) C6A C1A C2A 118.09(19) C6A C1A C10A 121.76(18) C2A C1A C10A 120.13(18) C6A C1A Ru1 72.08(11) C2A C1A Ru1 68.11(11) C10A C1A Ru1 130.06(14) C3A C2A C1A 121.9(2) C3A C2A Ru1 71.82(12) C1A C2A Ru1 73.69(12) C2A C3A C4A 119.4(2) C2A C3A Ru1 70.38(12) C4A C3A Ru1 71.50(12) C5A C4A C3A 120.0(2) C5A C4A Ru1 72.00(12) C3A C4A Ru1 70.69(12) C4A C5A C6A 120.6(2) C4A C5A Ru1 70.72(12) C6A C5A Ru1 72.54(11) C1A C6A C5A 120.00(19) C1A C6A C7A 121.42(19) C5A C6A C7A 118.52(19) C1A C6A Ru1 71.28(11) C5A C6A Ru1 69.64(11) C7A C6A Ru1 129.63(15) C6A C7A C8A 115.07(19) C9A C8A C11A 122.6(2) C9A C8A C7A 123.17(19) C11A C8A C7A 114.2(2) C8A C9A C14A 122.6(2) C8A C9A C10A 123.2(2) C14A C9A C10A 114.2(2) C9A C10A C1A 114.54(18) C12A C11A C8A 113.9(3) C13A C12A C11A 123.4(3) C12A C13A C14A 123.5(3) C13A C14A C9A 114.0(3) F5 P1 F1 91.16(9) F5 P1 F2 89.76(9) F1 P1 F2 178.84(10) F5 P1 F4 90.53(8) F1 P1 F4 91.23(8) F2 P1 F4 89.47(9) F5 P1 F6 179.78(10) F1 P1 F6 88.99(8) F2 P1 F6 90.09(8) F4 P1 F6 89.63(8) F5 P1 F3 89.94(8) F1 P1 F3 89.00(8) F2 P1 F3 90.29(9) F4 P1 F3 179.48(9) F6 P1 F3 89.91(8) loop_ _geom_bond_atom_site_label_1 _geom_bond_atom_site_label_2 _geom_bond_distance Ru1 N1B 2.1243(17) Ru1 N2B 2.1307(18) Ru1 C2A 2.151(2) Ru1 C3A 2.169(2) Ru1 C4A 2.180(2) Ru1 C5A 2.197(2) Ru1 C1A 2.2248(19) Ru1 C6A 2.2350(19) Ru1 Cl1 2.4050(6) N1B C1B 1.480(3) C1B C2B 1.497(3) C2B N2B 1.480(3) C1A C6A 1.402(3) C1A C2A 1.433(3) C1A C10A 1.506(3) C2A C3A 1.400(3) C3A C4A 1.409(3) C4A C5A 1.399(3) C5A C6A 1.437(3) C6A C7A 1.493(3) C7A C8A 1.500(3) C8A C9A 1.330(3) C8A C11A 1.496(3) C9A C14A 1.497(3) C9A C10A 1.502(3) C11A C12A 1.486(4) C12A C13A 1.310(5) C13A C14A 1.480(4) P1 F5 1.5815(14) P1 F1 1.5842(14) P1 F2 1.5909(15) P1 F4 1.5929(13) P1 F6 1.5956(13) P1 F3 1.5995(14)