#------------------------------------------------------------------------------ #$Date: 2011-01-03 14:48:23 +0200 (Mon, 03 Jan 2011) $ #$Revision: 5312 $ #$URL: file:///home/coder/svn-repositories/cod/cif/7/7101899.cif $ #------------------------------------------------------------------------------ # # This file is available in the Crystallography Open Database (COD), # http://www.crystallography.net/ # # All data on this site have been placed in the public domain by the # contributors. # data_7101899 loop_ _publ_author_name 'Bhatt, Prashant M' 'Desiraju, Gautam R' _publ_section_title ; Tautomeric polymorphism in omeprazole. ; _journal_issue 20 _journal_name_full 'Chemical communications (Cambridge, England)' _journal_page_first 2057 _journal_page_last 2059 _journal_year 2007 _chemical_formula_moiety 'C17 H19 N3 O3 S' _chemical_formula_sum 'C17 H19 N3 O3 S' _chemical_formula_weight 345 _chemical_melting_point 156 _chemical_name_common ; 6-methoxy-2-((4-methoxy-3,5-dimethyl-2- pyridinyl)methylsulfinyl) -1H-benzimidazole ; _chemical_name_systematic ; 6-methoxy-2-{(4-methoxy-3,5-dimethyl-2-pyridinyl)methylsulfinyl} -1H-benzimidazole ; _space_group_IT_number 2 _symmetry_cell_setting triclinic _symmetry_space_group_name_Hall '-P 1' _symmetry_space_group_name_H-M 'P -1' _atom_sites_solution_hydrogens geom _atom_sites_solution_primary direct _atom_sites_solution_secondary difmap _cell_angle_alpha 89.929(2) _cell_angle_beta 110.939(2) _cell_angle_gamma 116.937(2) _cell_formula_units_Z 2 _cell_length_a 9.6421(9) _cell_length_b 10.3865(10) _cell_length_c 10.1539(10) _cell_measurement_reflns_used 2992 _cell_measurement_temperature 100(2) _cell_measurement_theta_max 26.01 _cell_measurement_theta_min 2.19 _cell_volume 830.78(14) _computing_cell_refinement 'Bruker SMART' _computing_data_collection 'Bruker SMART' _computing_data_reduction 'Bruker SAINT' _computing_molecular_graphics 'Bruker SHELXTL' _computing_publication_material 'Bruker SHELXTL' _computing_structure_refinement 'SHELXL-97 (Sheldrick, 1997)' _computing_structure_solution 'SHELXS-97 (Sheldrick, 1990)' _diffrn_ambient_temperature 100(2) _diffrn_measured_fraction_theta_full 0.997 _diffrn_measured_fraction_theta_max 0.997 _diffrn_measurement_device_type 'CCD area detector' _diffrn_measurement_method 'phi and omega scans' _diffrn_radiation_monochromator graphite _diffrn_radiation_source 'fine-focus sealed tube' _diffrn_radiation_type MoK\a _diffrn_radiation_wavelength 0.71073 _diffrn_reflns_av_R_equivalents 0.0337 _diffrn_reflns_av_sigmaI/netI 0.0430 _diffrn_reflns_limit_h_max 11 _diffrn_reflns_limit_h_min -11 _diffrn_reflns_limit_k_max 12 _diffrn_reflns_limit_k_min -12 _diffrn_reflns_limit_l_max 12 _diffrn_reflns_limit_l_min -12 _diffrn_reflns_number 9197 _diffrn_reflns_theta_full 26.03 _diffrn_reflns_theta_max 26.03 _diffrn_reflns_theta_min 2.19 _exptl_absorpt_coefficient_mu 0.216 _exptl_absorpt_correction_type none _exptl_crystal_colour colourless _exptl_crystal_density_diffrn 1.381 _exptl_crystal_density_method 'not measured' _exptl_crystal_description plate _exptl_crystal_F_000 364 _exptl_crystal_size_max 0.21 _exptl_crystal_size_mid 0.19 _exptl_crystal_size_min 0.09 _refine_diff_density_max 0.578 _refine_diff_density_min -0.301 _refine_diff_density_rms 0.065 _refine_ls_extinction_method none _refine_ls_goodness_of_fit_ref 1.106 _refine_ls_hydrogen_treatment mixed _refine_ls_matrix_type full _refine_ls_number_parameters 225 _refine_ls_number_reflns 3262 _refine_ls_number_restraints 0 _refine_ls_restrained_S_all 1.106 _refine_ls_R_factor_all 0.0690 _refine_ls_R_factor_gt 0.0566 _refine_ls_shift/su_max 0.000 _refine_ls_shift/su_mean 0.000 _refine_ls_structure_factor_coef Fsqd _refine_ls_weighting_details 'calc w=1/[\s^2^(Fo^2^)+(0.0477P)^2^+0.8800P] where P=(Fo^2^+2Fc^2^)/3' _refine_ls_weighting_scheme calc _refine_ls_wR_factor_gt 0.1209 _refine_ls_wR_factor_ref 0.1268 _reflns_number_gt 2723 _reflns_number_total 3262 _reflns_threshold_expression >2sigma(I) _[local]_cod_data_source_file b700506g.txt _[local]_cod_data_source_block grd463_I _[local]_cod_cif_authors_sg_H-M P-1 _cod_depositor_comments ; The following automatic conversions were performed: '_symmetry_cell_setting' value 'Triclinic' changed to 'triclinic' according to '/home/saulius/struct/CIF-dictionaries/cif_core.dic' dictionary named 'cif_core.dic' version 2.4.1 from 2010-06-29. Automatic conversion script Id: cif_fix_enum 1527 2010-12-29 10:47:43Z saulius ; _cod_database_code 7101899 loop_ _symmetry_equiv_pos_as_xyz 'x, y, z' '-x, -y, -z' loop_ _atom_site_label _atom_site_type_symbol _atom_site_fract_x _atom_site_fract_y _atom_site_fract_z _atom_site_U_iso_or_equiv _atom_site_adp_type _atom_site_occupancy _atom_site_symmetry_multiplicity _atom_site_calc_flag _atom_site_refinement_flags N1 N 0.7323(3) 0.2409(2) 0.5668(2) 0.0177(5) Uani 1 1 d . H1 H 0.696(4) 0.156(3) 0.520(3) 0.026(8) Uiso 1 1 d . C2 C 0.6271(3) 0.2817(3) 0.5927(3) 0.0172(5) Uani 1 1 d . N3 N 0.7018(3) 0.4171(2) 0.6622(2) 0.0190(5) Uani 1 1 d . C3A C 0.8695(3) 0.4719(3) 0.6814(3) 0.0184(5) Uani 1 1 d . C4 C 1.0078(3) 0.6137(3) 0.7423(3) 0.0214(6) Uani 1 1 d . H4 H 0.9962 0.6878 0.7804 0.026 Uiso 1 1 calc R C5 C 1.1607(3) 0.6392(3) 0.7435(3) 0.0219(6) Uani 1 1 d . H5 H 1.2542 0.7325 0.7832 0.026 Uiso 1 1 calc R C6 C 1.1802(3) 0.5274(3) 0.6860(3) 0.0204(6) Uani 1 1 d . C7 C 1.0455(3) 0.3864(3) 0.6252(3) 0.0179(5) Uani 1 1 d . H7 H 1.0576 0.3122 0.5880 0.021 Uiso 1 1 calc R C7A C 0.8907(3) 0.3629(3) 0.6235(3) 0.0175(5) Uani 1 1 d . C8 C 0.3477(3) 0.1222(3) 0.3533(3) 0.0215(6) Uani 1 1 d . H8A H 0.3828 0.2122 0.3156 0.026 Uiso 1 1 calc R H8B H 0.4045 0.0714 0.3358 0.026 Uiso 1 1 calc R C9 C 0.1573(3) 0.0255(3) 0.2783(3) 0.0191(5) Uani 1 1 d . C10 C 0.0841(3) -0.0851(3) 0.1588(3) 0.0202(6) Uani 1 1 d . C11 C -0.0926(3) -0.1572(3) 0.0907(3) 0.0218(6) Uani 1 1 d . C12 C -0.1897(3) -0.1223(3) 0.1421(3) 0.0244(6) Uani 1 1 d . C13 C -0.1012(3) -0.0140(3) 0.2655(3) 0.0261(6) Uani 1 1 d . H13 H -0.1637 0.0085 0.3038 0.031 Uiso 1 1 calc R C14 C 0.1855(3) -0.1263(3) 0.1013(3) 0.0253(6) Uani 1 1 d . H14A H 0.3032 -0.0536 0.1464 0.038 Uiso 1 1 calc R H14B H 0.1458 -0.1310 -0.0007 0.038 Uiso 1 1 calc R H14C H 0.1720 -0.2205 0.1217 0.038 Uiso 1 1 calc R C15 C -0.3807(4) -0.1939(3) 0.0669(3) 0.0342(7) Uani 1 1 d . H15A H -0.4309 -0.2906 0.0881 0.051 Uiso 1 1 calc R H15B H -0.4127 -0.2013 -0.0350 0.051 Uiso 1 1 calc R H15C H -0.4198 -0.1354 0.0998 0.051 Uiso 1 1 calc R C16 C -0.2247(4) -0.4080(3) -0.0114(3) 0.0352(7) Uani 1 1 d . H16A H -0.3085 -0.4355 0.0284 0.053 Uiso 1 1 calc R H16B H -0.1287 -0.4146 0.0541 0.053 Uiso 1 1 calc R H16C H -0.2726 -0.4732 -0.1013 0.053 Uiso 1 1 calc R C17 C 1.3695(4) 0.4590(3) 0.6494(3) 0.0273(6) Uani 1 1 d . H17A H 1.2988 0.4193 0.5492 0.041 Uiso 1 1 calc R H17B H 1.3426 0.3820 0.7035 0.041 Uiso 1 1 calc R H17C H 1.4866 0.5008 0.6639 0.041 Uiso 1 1 calc R O1 O 1.3406(2) 0.5707(2) 0.6966(2) 0.0258(4) Uani 1 1 d . O2 O 0.3853(2) 0.02482(19) 0.59810(19) 0.0213(4) Uani 1 1 d . O3 O -0.1714(2) -0.2597(2) -0.03442(19) 0.0277(5) Uani 1 1 d . N4 N 0.0678(3) 0.0599(2) 0.3326(2) 0.0236(5) Uani 1 1 d . S1 S 0.40640(8) 0.16562(7) 0.54452(7) 0.01781(18) Uani 1 1 d . loop_ _atom_site_aniso_label _atom_site_aniso_U_11 _atom_site_aniso_U_22 _atom_site_aniso_U_33 _atom_site_aniso_U_23 _atom_site_aniso_U_13 _atom_site_aniso_U_12 N1 0.0149(11) 0.0141(11) 0.0198(11) -0.0013(9) 0.0054(9) 0.0046(9) C2 0.0124(12) 0.0177(13) 0.0163(13) 0.0011(10) 0.0046(10) 0.0040(10) N3 0.0135(11) 0.0186(11) 0.0182(11) -0.0026(9) 0.0033(9) 0.0047(9) C3A 0.0177(13) 0.0218(13) 0.0127(12) 0.0014(10) 0.0037(11) 0.0088(11) C4 0.0199(14) 0.0184(13) 0.0207(14) -0.0014(11) 0.0051(11) 0.0076(11) C5 0.0171(13) 0.0167(13) 0.0214(14) 0.0006(11) 0.0025(11) 0.0039(11) C6 0.0153(13) 0.0254(14) 0.0189(13) 0.0093(11) 0.0053(11) 0.0099(11) C7 0.0187(13) 0.0214(13) 0.0141(12) 0.0041(10) 0.0054(11) 0.0111(11) C7A 0.0180(13) 0.0189(13) 0.0132(12) 0.0046(10) 0.0052(10) 0.0079(11) C8 0.0198(14) 0.0236(14) 0.0151(13) -0.0009(11) 0.0063(11) 0.0061(11) C9 0.0187(13) 0.0180(13) 0.0179(13) 0.0054(10) 0.0064(11) 0.0075(11) C10 0.0223(14) 0.0189(13) 0.0146(13) 0.0053(10) 0.0060(11) 0.0073(11) C11 0.0238(14) 0.0178(13) 0.0143(13) 0.0058(11) 0.0045(11) 0.0050(11) C12 0.0183(14) 0.0236(14) 0.0236(15) 0.0085(12) 0.0052(12) 0.0066(12) C13 0.0206(14) 0.0272(15) 0.0292(15) 0.0062(12) 0.0102(12) 0.0104(12) C14 0.0230(15) 0.0260(15) 0.0194(14) 0.0000(12) 0.0062(12) 0.0077(12) C15 0.0203(15) 0.0374(17) 0.0321(17) 0.0089(14) 0.0049(13) 0.0082(13) C16 0.0388(18) 0.0245(16) 0.0225(15) -0.0033(12) 0.0077(14) 0.0032(13) C17 0.0247(15) 0.0306(16) 0.0355(17) 0.0095(13) 0.0151(13) 0.0181(13) O1 0.0167(10) 0.0242(10) 0.0353(11) 0.0035(9) 0.0091(9) 0.0099(8) O2 0.0198(10) 0.0192(9) 0.0223(10) 0.0009(8) 0.0093(8) 0.0068(8) O3 0.0259(11) 0.0248(10) 0.0154(9) 0.0009(8) 0.0025(8) 0.0033(9) N4 0.0183(12) 0.0234(12) 0.0253(12) 0.0032(10) 0.0081(10) 0.0076(10) S1 0.0137(3) 0.0168(3) 0.0190(3) -0.0024(2) 0.0060(3) 0.0047(2) loop_ _atom_type_symbol _atom_type_description _atom_type_scat_dispersion_real _atom_type_scat_dispersion_imag _atom_type_scat_source C C 0.0033 0.0016 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' H H 0.0000 0.0000 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' N N 0.0061 0.0033 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' O O 0.0106 0.0060 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' S S 0.1246 0.1234 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' loop_ _geom_angle_atom_site_label_1 _geom_angle_atom_site_label_2 _geom_angle_atom_site_label_3 _geom_angle C2 N1 C7A 105.7(2) C2 N1 H1 122(2) C7A N1 H1 132(2) N3 C2 N1 114.8(2) N3 C2 S1 119.99(18) N1 C2 S1 125.19(19) C2 N3 C3A 103.7(2) N3 C3A C4 129.8(2) N3 C3A C7A 110.3(2) C4 C3A C7A 119.8(2) C5 C4 C3A 117.6(2) C5 C4 H4 121.2 C3A C4 H4 121.2 C4 C5 C6 121.8(2) C4 C5 H5 119.1 C6 C5 H5 119.1 O1 C6 C7 123.9(2) O1 C6 C5 114.4(2) C7 C6 C5 121.7(2) C6 C7 C7A 115.7(2) C6 C7 H7 122.2 C7A C7 H7 122.2 N1 C7A C7 131.0(2) N1 C7A C3A 105.6(2) C7 C7A C3A 123.4(2) C9 C8 S1 109.48(17) C9 C8 H8A 109.8 S1 C8 H8A 109.8 C9 C8 H8B 109.8 S1 C8 H8B 109.8 H8A C8 H8B 108.2 N4 C9 C10 123.9(2) N4 C9 C8 114.3(2) C10 C9 C8 121.8(2) C9 C10 C11 116.3(2) C9 C10 C14 123.5(2) C11 C10 C14 120.2(2) O3 C11 C12 119.6(2) O3 C11 C10 118.8(2) C12 C11 C10 121.4(2) C13 C12 C11 116.4(2) C13 C12 C15 121.1(3) C11 C12 C15 122.5(3) N4 C13 C12 124.3(3) N4 C13 H13 117.8 C12 C13 H13 117.8 C10 C14 H14A 109.5 C10 C14 H14B 109.5 H14A C14 H14B 109.5 C10 C14 H14C 109.5 H14A C14 H14C 109.5 H14B C14 H14C 109.5 C12 C15 H15A 109.5 C12 C15 H15B 109.5 H15A C15 H15B 109.5 C12 C15 H15C 109.5 H15A C15 H15C 109.5 H15B C15 H15C 109.5 O3 C16 H16A 109.5 O3 C16 H16B 109.5 H16A C16 H16B 109.5 O3 C16 H16C 109.5 H16A C16 H16C 109.5 H16B C16 H16C 109.5 O1 C17 H17A 109.5 O1 C17 H17B 109.5 H17A C17 H17B 109.5 O1 C17 H17C 109.5 H17A C17 H17C 109.5 H17B C17 H17C 109.5 C6 O1 C17 116.4(2) C11 O3 C16 113.4(2) C13 N4 C9 117.6(2) O2 S1 C2 107.06(11) O2 S1 C8 105.38(11) C2 S1 C8 96.83(12) loop_ _geom_bond_atom_site_label_1 _geom_bond_atom_site_label_2 _geom_bond_distance N1 C2 1.363(3) N1 C7A 1.375(3) N1 H1 0.85(3) C2 N3 1.310(3) C2 S1 1.776(2) N3 C3A 1.385(3) C3A C4 1.401(4) C3A C7A 1.402(3) C4 C5 1.370(4) C4 H4 0.9300 C5 C6 1.415(4) C5 H5 0.9300 C6 O1 1.363(3) C6 C7 1.385(4) C7 C7A 1.392(3) C7 H7 0.9300 C8 C9 1.513(4) C8 S1 1.811(3) C8 H8A 0.9700 C8 H8B 0.9700 C9 N4 1.341(3) C9 C10 1.395(4) C10 C11 1.395(4) C10 C14 1.504(4) C11 O3 1.381(3) C11 C12 1.391(4) C12 C13 1.390(4) C12 C15 1.511(4) C13 N4 1.335(3) C13 H13 0.9300 C14 H14A 0.9600 C14 H14B 0.9600 C14 H14C 0.9600 C15 H15A 0.9600 C15 H15B 0.9600 C15 H15C 0.9600 C16 O3 1.435(3) C16 H16A 0.9600 C16 H16B 0.9600 C16 H16C 0.9600 C17 O1 1.429(3) C17 H17A 0.9600 C17 H17B 0.9600 C17 H17C 0.9600 O2 S1 1.5111(18)