#------------------------------------------------------------------------------ #$Date: 2016-03-26 02:03:57 +0200 (Sat, 26 Mar 2016) $ #$Revision: 180121 $ #$URL: file:///home/coder/svn-repositories/cod/cif/7/10/19/7101900.cif $ #------------------------------------------------------------------------------ # # This file is available in the Crystallography Open Database (COD), # http://www.crystallography.net/ # # All data on this site have been placed in the public domain by the # contributors. # data_7101900 loop_ _publ_author_name 'Bhatt, Prashant M' 'Desiraju, Gautam R' _publ_section_title ; Tautomeric polymorphism in omeprazole. ; _journal_issue 20 _journal_name_full 'Chemical communications (Cambridge, England)' _journal_page_first 2057 _journal_page_last 2059 _journal_paper_doi 10.1039/c3cc44558e _journal_year 2007 _chemical_formula_moiety 'C17 H19 N3 O3 S' _chemical_formula_sum 'C17 H19 N3 O3 S' _chemical_formula_weight 345 _chemical_name_common ; 5(6)-methoxy-2-((4-methoxy-3,5-dimethyl-2- pyridinyl)methylsulfinyl) -1H-benzimidazole ; _chemical_name_systematic ; 5(6)-methoxy-2-{(4-methoxy-3,5-dimethyl-2-pyridinyl)methylsulfinyl} -1H-benzimidazole ; _space_group_IT_number 2 _symmetry_cell_setting triclinic _symmetry_space_group_name_Hall '-P 1' _symmetry_space_group_name_H-M 'P -1' _atom_sites_solution_hydrogens geom _atom_sites_solution_primary direct _atom_sites_solution_secondary difmap _audit_creation_method SHELXL-97 _cell_angle_alpha 90.044(12) _cell_angle_beta 111.552(12) _cell_angle_gamma 116.451(11) _cell_formula_units_Z 2 _cell_length_a 9.667(7) _cell_length_b 10.337(8) _cell_length_c 10.292(8) _cell_measurement_reflns_used 1460 _cell_measurement_temperature 100(2) _cell_measurement_theta_max 25.88 _cell_measurement_theta_min 2.24 _cell_volume 839.6(11) _computing_cell_refinement 'Bruker SMART' _computing_data_collection 'Bruker SMART' _computing_data_reduction 'Bruker SAINT' _computing_molecular_graphics 'Bruker SHELXTL' _computing_publication_material 'Bruker SHELXTL' _computing_structure_refinement 'SHELXL-97 (Sheldrick, 1997)' _computing_structure_solution 'SHELXS-97 (Sheldrick, 1990)' _diffrn_ambient_temperature 100(2) _diffrn_measured_fraction_theta_full 0.980 _diffrn_measured_fraction_theta_max 0.980 _diffrn_measurement_device_type 'CCD area detector' _diffrn_measurement_method 'phi and omega scans' _diffrn_radiation_monochromator graphite _diffrn_radiation_source 'fine-focus sealed tube' _diffrn_radiation_type MoK\a _diffrn_radiation_wavelength 0.71073 _diffrn_reflns_av_R_equivalents 0.0563 _diffrn_reflns_av_sigmaI/netI 0.0898 _diffrn_reflns_limit_h_max 11 _diffrn_reflns_limit_h_min -11 _diffrn_reflns_limit_k_max 12 _diffrn_reflns_limit_k_min -12 _diffrn_reflns_limit_l_max 12 _diffrn_reflns_limit_l_min -12 _diffrn_reflns_number 7586 _diffrn_reflns_theta_full 26.07 _diffrn_reflns_theta_max 26.07 _diffrn_reflns_theta_min 2.17 _exptl_absorpt_coefficient_mu 0.213 _exptl_absorpt_correction_type none _exptl_crystal_colour colourless _exptl_crystal_density_diffrn 1.366 _exptl_crystal_density_method 'not measured' _exptl_crystal_description block _exptl_crystal_F_000 364 _exptl_crystal_size_max 0.20 _exptl_crystal_size_mid 0.17 _exptl_crystal_size_min 0.12 _refine_diff_density_max 0.348 _refine_diff_density_min -0.268 _refine_diff_density_rms 0.063 _refine_ls_extinction_method none _refine_ls_goodness_of_fit_ref 0.981 _refine_ls_hydrogen_treatment mixed _refine_ls_matrix_type full _refine_ls_number_parameters 237 _refine_ls_number_reflns 3248 _refine_ls_number_restraints 30 _refine_ls_restrained_S_all 0.978 _refine_ls_R_factor_all 0.1093 _refine_ls_R_factor_gt 0.0532 _refine_ls_shift/su_max 0.000 _refine_ls_shift/su_mean 0.000 _refine_ls_structure_factor_coef Fsqd _refine_ls_weighting_details 'calc w=1/[\s^2^(Fo^2^)+(0.0701P)^2^+0.0000P] where P=(Fo^2^+2Fc^2^)/3' _refine_ls_weighting_scheme calc _refine_ls_wR_factor_gt 0.1196 _refine_ls_wR_factor_ref 0.1411 _reflns_number_gt 1950 _reflns_number_total 3248 _reflns_threshold_expression >2sigma(I) _cod_data_source_file b700506g.txt _cod_data_source_block grd498_II _cod_depositor_comments ; The following automatic conversions were performed: '_symmetry_cell_setting' value 'Triclinic' changed to 'triclinic' according to '/home/saulius/struct/CIF-dictionaries/cif_core.dic' dictionary named 'cif_core.dic' version 2.4.1 from 2010-06-29. Automatic conversion script Id: cif_fix_enum 1527 2010-12-29 10:47:43Z saulius ; _cod_original_sg_symbol_H-M P-1 _cod_database_code 7101900 loop_ _symmetry_equiv_pos_as_xyz 'x, y, z' '-x, -y, -z' loop_ _atom_site_label _atom_site_type_symbol _atom_site_fract_x _atom_site_fract_y _atom_site_fract_z _atom_site_U_iso_or_equiv _atom_site_adp_type _atom_site_occupancy _atom_site_symmetry_multiplicity _atom_site_calc_flag _atom_site_refinement_flags _atom_site_disorder_assembly _atom_site_disorder_group N1 N 0.7327(3) 0.2421(3) 0.5663(3) 0.0272(7) Uani 1 1 d . . . C2 C 0.6279(3) 0.2830(3) 0.5909(3) 0.0280(7) Uani 1 1 d . . . N3 N 0.7033(3) 0.4202(3) 0.6602(3) 0.0310(7) Uani 1 1 d . . . C3A C 0.8705(4) 0.4738(3) 0.6796(3) 0.0305(8) Uani 1 1 d . . . C4 C 1.0089(4) 0.6160(4) 0.7407(3) 0.0332(8) Uani 1 1 d . A . H4 H 0.9972 0.6905 0.7783 0.040 Uiso 1 1 calc R . . C5 C 1.1614(4) 0.6416(4) 0.7430(3) 0.0348(8) Uani 1 1 d U . . C6 C 1.1800(4) 0.5281(4) 0.6867(3) 0.0330(8) Uani 1 1 d U A . C7 C 1.0462(4) 0.3859(3) 0.6248(3) 0.0306(8) Uani 1 1 d . . . H7 H 1.0585 0.3115 0.5878 0.037 Uiso 1 1 calc R A . C7A C 0.8919(4) 0.3640(3) 0.6228(3) 0.0280(7) Uani 1 1 d . A . C8 C 0.3467(3) 0.1233(3) 0.3535(3) 0.0300(8) Uani 1 1 d . . . H8A H 0.3800 0.2129 0.3155 0.036 Uiso 1 1 calc R . . H8B H 0.4038 0.0723 0.3366 0.036 Uiso 1 1 calc R . . C9 C 0.1559(4) 0.0255(3) 0.2792(3) 0.0274(7) Uani 1 1 d . . . C10 C 0.0835(4) -0.0835(3) 0.1590(3) 0.0289(8) Uani 1 1 d . . . C11 C -0.0934(4) -0.1578(3) 0.0927(3) 0.0313(8) Uani 1 1 d . . . C12 C -0.1904(4) -0.1262(4) 0.1452(3) 0.0344(8) Uani 1 1 d . . . C13 C -0.1020(4) -0.0188(4) 0.2697(4) 0.0375(9) Uani 1 1 d . . . H13 H -0.1645 0.0016 0.3089 0.045 Uiso 1 1 calc R . . C14 C 0.1866(4) -0.1202(4) 0.1004(3) 0.0388(9) Uani 1 1 d . . . H14A H 0.2096 -0.1939 0.1458 0.058 Uiso 1 1 calc R . . H14B H 0.2915 -0.0331 0.1187 0.058 Uiso 1 1 calc R . . H14C H 0.1241 -0.1572 -0.0004 0.058 Uiso 1 1 calc R . . C15 C -0.3827(4) -0.1996(4) 0.0722(4) 0.0501(10) Uani 1 1 d . . . H15A H -0.4299 -0.2999 0.0848 0.075 Uiso 1 1 calc R . . H15B H -0.4172 -0.1980 -0.0277 0.075 Uiso 1 1 calc R . . H15C H -0.4224 -0.1474 0.1132 0.075 Uiso 1 1 calc R . . C16 C -0.2187(5) -0.4078(4) -0.0120(4) 0.0499(11) Uani 1 1 d . . . H16A H -0.2995 -0.4379 0.0297 0.075 Uiso 1 1 calc R . . H16B H -0.1197 -0.4125 0.0505 0.075 Uiso 1 1 calc R . . H16C H -0.2680 -0.4724 -0.1020 0.075 Uiso 1 1 calc R . . C17A C 1.3687(4) 0.4592(4) 0.6506(4) 0.0371(10) Uani 0.922(3) 1 d PU A 1 H17A H 1.2986 0.4208 0.5507 0.056 Uiso 0.922(3) 1 calc PR A 1 H17B H 1.3407 0.3812 0.7026 0.056 Uiso 0.922(3) 1 calc PR A 1 H17C H 1.4857 0.5000 0.6666 0.056 Uiso 0.922(3) 1 calc PR A 1 O1A O 1.3408(2) 0.5714(2) 0.6981(2) 0.0328(7) Uani 0.922(3) 1 d PU A 1 C17B C 1.339(5) 0.839(5) 0.839(4) 0.035 Uiso 0.078(3) 1 d PU A 2 H17D H 1.3063 0.8060 0.9151 0.052 Uiso 0.078(3) 1 calc PR A 2 H17E H 1.2576 0.8624 0.7723 0.052 Uiso 0.078(3) 1 calc PR A 2 H17F H 1.4486 0.9248 0.8763 0.052 Uiso 0.078(3) 1 calc PR A 2 O1B O 1.345(4) 0.731(3) 0.771(3) 0.035 Uiso 0.078(3) 1 d PU A 2 O2 O 0.3868(2) 0.0278(2) 0.5965(2) 0.0304(5) Uani 1 1 d . . . O3 O -0.1723(3) -0.2596(2) -0.0333(2) 0.0372(6) Uani 1 1 d . . . N4 N 0.0673(3) 0.0567(3) 0.3359(3) 0.0336(7) Uani 1 1 d . . . S1 S 0.40772(9) 0.16883(9) 0.54314(8) 0.0294(2) Uani 1 1 d . . . H1 H 0.706(4) 0.166(3) 0.523(3) 0.025(9) Uiso 1 1 d . . . H5 H 1.263(5) 0.738(5) 0.781(4) 0.039(10) Uiso 0.92 1 d P . . loop_ _atom_site_aniso_label _atom_site_aniso_U_11 _atom_site_aniso_U_22 _atom_site_aniso_U_33 _atom_site_aniso_U_23 _atom_site_aniso_U_13 _atom_site_aniso_U_12 N1 0.0188(13) 0.0219(16) 0.0293(15) -0.0040(12) 0.0058(11) 0.0036(12) C2 0.0178(15) 0.0275(18) 0.0261(17) -0.0048(13) 0.0046(12) 0.0043(14) N3 0.0209(13) 0.0325(16) 0.0259(15) -0.0058(12) 0.0053(11) 0.0052(12) C3A 0.0232(16) 0.0303(19) 0.0240(17) -0.0021(14) 0.0032(13) 0.0068(14) C4 0.0240(16) 0.0308(19) 0.0283(18) -0.0050(14) 0.0016(13) 0.0072(14) C5 0.0247(17) 0.0286(19) 0.0333(19) 0.0013(15) 0.0030(14) 0.0056(16) C6 0.0162(15) 0.040(2) 0.0295(18) 0.0106(15) 0.0028(13) 0.0085(14) C7 0.0261(17) 0.0313(19) 0.0293(18) 0.0082(14) 0.0077(14) 0.0125(15) C7A 0.0199(15) 0.0294(18) 0.0240(16) 0.0021(13) 0.0046(12) 0.0066(14) C8 0.0205(15) 0.0285(18) 0.0262(17) -0.0021(13) 0.0068(13) 0.0022(14) C9 0.0230(15) 0.0259(17) 0.0272(17) 0.0046(13) 0.0077(13) 0.0090(14) C10 0.0207(15) 0.0282(18) 0.0257(17) 0.0044(14) 0.0064(13) 0.0045(14) C11 0.0259(16) 0.0274(18) 0.0217(17) 0.0044(13) 0.0030(13) 0.0028(14) C12 0.0208(16) 0.038(2) 0.0304(18) 0.0060(15) 0.0048(14) 0.0072(15) C13 0.0239(17) 0.039(2) 0.045(2) 0.0045(16) 0.0141(15) 0.0113(16) C14 0.0284(17) 0.048(2) 0.0262(18) -0.0044(15) 0.0067(14) 0.0112(16) C15 0.0218(17) 0.058(3) 0.050(2) 0.0050(19) 0.0058(16) 0.0106(18) C16 0.052(2) 0.035(2) 0.030(2) -0.0088(16) 0.0073(17) 0.0019(18) C17A 0.0282(19) 0.038(2) 0.047(2) 0.0072(18) 0.0124(17) 0.0197(17) O1A 0.0154(11) 0.0308(14) 0.0449(15) 0.0005(11) 0.0061(10) 0.0100(10) O2 0.0225(11) 0.0271(12) 0.0317(12) -0.0015(9) 0.0092(9) 0.0055(10) O3 0.0306(12) 0.0333(13) 0.0234(12) 0.0002(10) 0.0038(9) 0.0015(10) N4 0.0220(13) 0.0336(16) 0.0365(16) -0.0009(12) 0.0089(12) 0.0088(12) S1 0.0185(4) 0.0278(5) 0.0292(5) -0.0063(3) 0.0059(3) 0.0039(3) loop_ _atom_type_symbol _atom_type_description _atom_type_scat_dispersion_real _atom_type_scat_dispersion_imag _atom_type_scat_source C C 0.0033 0.0016 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' H H 0.0000 0.0000 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' N N 0.0061 0.0033 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' O O 0.0106 0.0060 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' S S 0.1246 0.1234 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' loop_ _geom_angle_atom_site_label_1 _geom_angle_atom_site_label_2 _geom_angle_atom_site_label_3 _geom_angle C2 N1 C7A 106.4(3) C2 N1 H1 127(2) C7A N1 H1 127(2) N3 C2 N1 114.4(3) N3 C2 S1 119.5(2) N1 C2 S1 126.0(2) C2 N3 C3A 103.5(3) N3 C3A C7A 110.7(3) N3 C3A C4 129.6(3) C7A C3A C4 119.7(3) C5 C4 C3A 117.9(3) C5 C4 H4 121.0 C3A C4 H4 121.0 C4 C5 C6 121.2(3) C4 C5 O1B 156.5(13) C6 C5 O1B 82.3(12) C4 C5 H5 123(2) C6 C5 H5 116(2) O1B C5 H5 33(2) O1A C6 C7 123.3(3) O1A C6 C5 113.9(3) C7 C6 C5 122.8(3) C6 C7 C7A 114.6(3) C6 C7 H7 122.7 C7A C7 H7 122.7 N1 C7A C7 131.1(3) N1 C7A C3A 105.0(3) C7 C7A C3A 123.8(3) C9 C8 S1 109.4(2) C9 C8 H8A 109.8 S1 C8 H8A 109.8 C9 C8 H8B 109.8 S1 C8 H8B 109.8 H8A C8 H8B 108.2 N4 C9 C10 124.3(3) N4 C9 C8 114.4(3) C10 C9 C8 121.2(3) C9 C10 C11 116.0(3) C9 C10 C14 123.2(3) C11 C10 C14 120.7(3) C12 C11 O3 119.7(3) C12 C11 C10 121.6(3) O3 C11 C10 118.6(3) C11 C12 C13 116.5(3) C11 C12 C15 123.1(3) C13 C12 C15 120.4(3) N4 C13 C12 124.0(3) N4 C13 H13 118.0 C12 C13 H13 118.0 C10 C14 H14A 109.5 C10 C14 H14B 109.5 H14A C14 H14B 109.5 C10 C14 H14C 109.5 H14A C14 H14C 109.5 H14B C14 H14C 109.5 C12 C15 H15A 109.5 C12 C15 H15B 109.5 H15A C15 H15B 109.5 C12 C15 H15C 109.5 H15A C15 H15C 109.5 H15B C15 H15C 109.5 O3 C16 H16A 109.5 O3 C16 H16B 109.5 H16A C16 H16B 109.5 O3 C16 H16C 109.5 H16A C16 H16C 109.5 H16B C16 H16C 109.5 C6 O1A C17A 116.1(3) O1B C17B H17D 109.5 O1B C17B H17E 109.5 H17D C17B H17E 109.5 O1B C17B H17F 109.5 H17D C17B H17F 109.5 H17E C17B H17F 109.5 O1B C17B H5 40(3) H17D C17B H5 90.1 H17E C17B H5 84.7 H17F C17B H5 149.1 C17B O1B C5 85(3) C17B O1B H5 47(3) C5 O1B H5 38(3) C11 O3 C16 113.3(2) C9 N4 C13 117.5(3) O2 S1 C2 106.98(14) O2 S1 C8 105.22(14) C2 S1 C8 96.75(14) loop_ _geom_bond_atom_site_label_1 _geom_bond_atom_site_label_2 _geom_bond_distance N1 C2 1.356(4) N1 C7A 1.381(4) N1 H1 0.79(3) C2 N3 1.322(4) C2 S1 1.777(3) N3 C3A 1.387(4) C3A C7A 1.404(4) C3A C4 1.405(4) C4 C5 1.368(5) C4 H4 0.9300 C5 C6 1.416(5) C5 O1B 1.50(3) C5 H5 0.98(4) C6 O1A 1.370(4) C6 C7 1.393(4) C7 C7A 1.398(4) C7 H7 0.9300 C8 C9 1.520(4) C8 S1 1.813(3) C8 H8A 0.9700 C8 H8B 0.9700 C9 N4 1.338(4) C9 C10 1.395(4) C10 C11 1.398(4) C10 C14 1.510(4) C11 C12 1.387(5) C11 O3 1.388(3) C12 C13 1.397(4) C12 C15 1.521(4) C13 N4 1.340(4) C13 H13 0.9300 C14 H14A 0.9600 C14 H14B 0.9600 C14 H14C 0.9600 C15 H15A 0.9600 C15 H15B 0.9600 C15 H15C 0.9600 C16 O3 1.435(4) C16 H16A 0.9600 C16 H16B 0.9600 C16 H16C 0.9600 C17A O1A 1.426(4) C17A H17A 0.9600 C17A H17B 0.9600 C17A H17C 0.9600 C17B O1B 1.35(5) C17B H17D 0.9600 C17B H17E 0.9600 C17B H17F 0.9600 C17B H5 0.99(4) O1B H5 0.87(4) O2 S1 1.512(2)