#------------------------------------------------------------------------------ #$Date: 2016-03-26 13:54:03 +0200 (Sat, 26 Mar 2016) $ #$Revision: 180239 $ #$URL: file:///home/coder/svn-repositories/cod/cif/7/11/25/7112513.cif $ #------------------------------------------------------------------------------ # # This file is available in the Crystallography Open Database (COD), # http://www.crystallography.net/ # # All data on this site have been placed in the public domain by the # contributors. # data_7112513 loop_ _publ_author_name 'Scott, James S.' 'Birch, Alan M.' 'Brocklehurst, Katy J.' 'Brown, Hayley S.' 'Goldberg, Kristin' 'Groombridge, Sam D.' 'Hudson, Julian A.' 'Leach, Andrew G.' 'MacFaul, Philip A.' 'McKerrecher, Darren' 'Poultney, Ruth' 'Schofield, Paul' 'Svensson, Per H.' _publ_section_title ; Optimisation of aqueous solubility in a series of G protein coupled receptor 119 (GPR119) agonists ; _journal_issue 1 _journal_name_full MedChemComm _journal_page_first 95 _journal_paper_doi 10.1039/c2md20130e _journal_volume 4 _journal_year 2013 _chemical_formula_moiety 'C20 H22 N6 O4' _chemical_formula_sum 'C20 H22 N6 O4' _chemical_formula_weight 410.44 _chemical_name_systematic ; tetrahydrofuran-3-yl 4-(5-((3-cyanopyridin-4-yl) methoxy)pyrimidin-2-yl)piperazine-1-carboxylate ; _space_group_IT_number 2 _space_group_name_Hall -P1 _symmetry_cell_setting triclinic _symmetry_space_group_name_Hall '-P 1' _symmetry_space_group_name_H-M 'P -1' _atom_sites_solution_hydrogens geom _atom_sites_solution_primary direct _atom_sites_solution_secondary difmap _audit_creation_method SHELXL-97 _cell_angle_alpha 85.165(6) _cell_angle_beta 83.895(6) _cell_angle_gamma 76.853(5) _cell_formula_units_Z 2 _cell_length_a 5.2885(7) _cell_length_b 11.2227(15) _cell_length_c 16.881(2) _cell_measurement_reflns_used 5121 _cell_measurement_temperature 200(2) _cell_measurement_theta_max 25.1 _cell_measurement_theta_min 2.43 _cell_volume 968.2(2) _computing_cell_refinement 'Bruker SAINT' _computing_data_collection 'Bruker APEX2' _computing_data_reduction 'Bruker SAINT' _computing_molecular_graphics 'Bruker SHELXTL' _computing_publication_material 'Bruker SHELXTL' _computing_structure_refinement 'SHELXL-97 (Sheldrick, 2008)' _computing_structure_solution 'SHELXS-97 (Sheldrick, 2008)' _diffrn_ambient_temperature 200(2) _diffrn_measured_fraction_theta_full 0.981 _diffrn_measured_fraction_theta_max 0.981 _diffrn_measurement_device_type 'Bruker APEX-II CCD' _diffrn_measurement_method '\f and \w scans' _diffrn_radiation_monochromator graphite _diffrn_radiation_source 'fine-focus sealed tube' _diffrn_radiation_type MoK\a _diffrn_radiation_wavelength 0.71073 _diffrn_reflns_av_R_equivalents 0.0337 _diffrn_reflns_av_sigmaI/netI 0.0313 _diffrn_reflns_limit_h_max 6 _diffrn_reflns_limit_h_min -6 _diffrn_reflns_limit_k_max 13 _diffrn_reflns_limit_k_min -13 _diffrn_reflns_limit_l_max 20 _diffrn_reflns_limit_l_min -20 _diffrn_reflns_number 15781 _diffrn_reflns_theta_full 25.1 _diffrn_reflns_theta_max 25.1 _diffrn_reflns_theta_min 1.87 _exptl_absorpt_coefficient_mu 0.101 _exptl_absorpt_correction_T_max 0.999 _exptl_absorpt_correction_T_min 0.975 _exptl_absorpt_correction_type empirical _exptl_absorpt_process_details 'Bruker Kappa APEXII' _exptl_crystal_colour colourless _exptl_crystal_density_diffrn 1.408 _exptl_crystal_density_meas ? _exptl_crystal_density_method 'not measured' _exptl_crystal_description rod _exptl_crystal_F_000 432 _exptl_crystal_size_max 0.23 _exptl_crystal_size_mid 0.06 _exptl_crystal_size_min 0.05 _refine_diff_density_max 0.345 _refine_diff_density_min -0.234 _refine_diff_density_rms 0.049 _refine_ls_extinction_method none _refine_ls_goodness_of_fit_ref 1.066 _refine_ls_hydrogen_treatment constr _refine_ls_matrix_type full _refine_ls_number_parameters 271 _refine_ls_number_reflns 2493 _refine_ls_number_restraints 0 _refine_ls_restrained_S_all 1.066 _refine_ls_R_factor_all 0.0742 _refine_ls_R_factor_gt 0.0549 _refine_ls_shift/su_max 0.000 _refine_ls_shift/su_mean 0.000 _refine_ls_structure_factor_coef Fsqd _refine_ls_weighting_details 'calc w=1/[\s^2^(Fo^2^)+(0.0668P)^2^+0.9645P] where P=(Fo^2^+2Fc^2^)/3' _refine_ls_weighting_scheme calc _refine_ls_wR_factor_gt 0.1402 _refine_ls_wR_factor_ref 0.1478 _reflns_number_gt 1917 _reflns_number_total 3457 _reflns_threshold_expression >2sigma(I) _cod_data_source_file c2md20130e.txt _cod_data_source_block 13 _cod_depositor_comments ; The following automatic conversions were performed: '_symmetry_cell_setting' value 'Triclinic' changed to 'triclinic' according to /usr/data/users/saulius/automatic-downloads/retrospective/RSC/lib/dictionaries/cif_core.dic dictionary named 'cif_core.dic' version 2.4.2 from 2011-04-26. Automatic conversion script Id: cif_fix_values 2281 2013-09-26 08:29:07Z andrius The following automatic conversions were performed: '_exptl_crystal_density_meas' value 'N/A' was changed to '?' - the value is perceived as not measured. Automatic conversion script Id: cif_fix_values 3008 2015-01-20 13:52:24Z robertas ; _cod_original_cell_volume 968.3(2) _cod_original_sg_symbol_H-M P-1 _cod_database_code 7112513 loop_ _symmetry_equiv_pos_as_xyz 'x, y, z' '-x, -y, -z' loop_ _atom_site_label _atom_site_type_symbol _atom_site_fract_x _atom_site_fract_y _atom_site_fract_z _atom_site_U_iso_or_equiv _atom_site_adp_type _atom_site_occupancy _atom_site_symmetry_multiplicity _atom_site_calc_flag _atom_site_refinement_flags O10 O 1.2132(4) 0.30299(18) 1.18404(13) 0.0390(6) Uani 1 1 d . O25 O 0.1977(5) 0.26066(19) 0.70948(13) 0.0411(6) Uani 1 1 d . N17 N 0.6285(5) 0.2418(2) 0.95230(15) 0.0323(7) Uani 1 1 d . C14 C 0.7722(6) 0.2570(3) 1.01265(18) 0.0275(8) Uani 1 1 d . N20 N 0.3549(5) 0.1980(2) 0.82721(14) 0.0302(7) Uani 1 1 d . N13 N 0.8144(5) 0.1660(2) 1.06937(15) 0.0328(7) Uani 1 1 d . O24 O 0.2141(5) 0.0649(2) 0.75735(13) 0.0412(6) Uani 1 1 d . N15 N 0.8569(5) 0.3614(2) 1.01026(15) 0.0312(7) Uani 1 1 d . C11 C 1.0621(6) 0.2806(3) 1.12823(18) 0.0295(8) Uani 1 1 d . C9 C 1.2946(7) 0.2059(3) 1.24203(19) 0.0335(8) Uani 1 1 d . H9A H 1.3953 0.1322 1.2154 0.040 Uiso 1 1 calc R H9B H 1.1409 0.1845 1.2738 0.040 Uiso 1 1 calc R C1 C 1.4619(6) 0.2488(3) 1.29545(18) 0.0304(8) Uani 1 1 d . C12 C 0.9597(6) 0.1790(3) 1.12703(19) 0.0325(8) Uani 1 1 d . H12 H 0.9927 0.1161 1.1683 0.039 Uiso 1 1 calc R C16 C 1.0021(6) 0.3707(3) 1.06803(18) 0.0335(8) Uani 1 1 d . H16 H 1.0677 0.4428 1.0679 0.040 Uiso 1 1 calc R C23 C 0.2513(6) 0.1663(3) 0.76439(19) 0.0312(8) Uani 1 1 d . C22 C 0.6000(7) 0.3288(3) 0.88282(19) 0.0361(8) Uani 1 1 d . H22A H 0.7572 0.3091 0.8447 0.043 Uiso 1 1 calc R H22B H 0.5844 0.4127 0.8998 0.043 Uiso 1 1 calc R C19 C 0.3900(7) 0.1126(3) 0.89670(19) 0.0365(9) Uani 1 1 d . H19A H 0.4008 0.0284 0.8809 0.044 Uiso 1 1 calc R H19B H 0.2382 0.1336 0.9366 0.044 Uiso 1 1 calc R C21 C 0.3619(7) 0.3241(3) 0.8420(2) 0.0361(8) Uani 1 1 d . H21A H 0.2031 0.3605 0.8759 0.043 Uiso 1 1 calc R H21B H 0.3622 0.3736 0.7907 0.043 Uiso 1 1 calc R N4 N 1.7902(6) 0.3176(3) 1.39548(17) 0.0460(8) Uani 1 1 d . C18 C 0.6323(7) 0.1171(3) 0.9326(2) 0.0383(9) Uani 1 1 d . H18A H 0.6486 0.0620 0.9817 0.046 Uiso 1 1 calc R H18B H 0.7856 0.0880 0.8946 0.046 Uiso 1 1 calc R C3 C 1.6844(7) 0.2214(3) 1.4152(2) 0.0447(9) Uani 1 1 d . H3 H 1.7241 0.1752 1.4639 0.054 Uiso 1 1 calc R C5 C 1.7286(7) 0.3800(3) 1.3268(2) 0.0418(9) Uani 1 1 d . H5 H 1.7990 0.4502 1.3121 0.050 Uiso 1 1 calc R C30 C -0.1904(8) 0.2492(3) 0.6548(2) 0.0533(10) Uani 1 1 d . H30A H -0.2637 0.2123 0.6137 0.064 Uiso 1 1 calc R H30B H -0.2310 0.2094 0.7077 0.064 Uiso 1 1 calc R C2 C 1.5180(6) 0.1848(3) 1.36814(19) 0.0341(8) Uani 1 1 d . C6 C 1.5700(6) 0.3494(3) 1.2758(2) 0.0368(9) Uani 1 1 d . H6 H 1.5354 0.3973 1.2274 0.044 Uiso 1 1 calc R N8 N 1.3045(7) 0.0046(3) 1.4197(2) 0.0645(10) Uani 1 1 d . C26 C 0.0910(7) 0.2361(3) 0.6372(2) 0.0426(9) Uani 1 1 d . H26 H 0.1784 0.1541 0.6171 0.051 Uiso 1 1 calc R C27 C 0.1172(7) 0.3438(4) 0.5737(2) 0.0495(10) Uani 1 1 d . H27A H 0.2629 0.3814 0.5828 0.059 Uiso 1 1 calc R H27B H 0.1422 0.3161 0.5187 0.059 Uiso 1 1 calc R C28 C -0.1430(8) 0.4308(3) 0.5893(2) 0.0530(10) Uani 1 1 d . H28A H -0.1172 0.5107 0.6037 0.064 Uiso 1 1 calc R H28B H -0.2380 0.4448 0.5407 0.064 Uiso 1 1 calc R C7 C 1.4019(7) 0.0830(3) 1.3962(2) 0.0417(9) Uani 1 1 d . O29 O -0.2915(5) 0.3778(2) 0.65393(17) 0.0629(8) Uani 1 1 d . loop_ _atom_site_aniso_label _atom_site_aniso_U_11 _atom_site_aniso_U_22 _atom_site_aniso_U_33 _atom_site_aniso_U_23 _atom_site_aniso_U_13 _atom_site_aniso_U_12 O10 0.0572(16) 0.0289(13) 0.0370(13) 0.0048(10) -0.0223(12) -0.0159(11) O25 0.0544(16) 0.0354(13) 0.0391(14) 0.0058(11) -0.0242(12) -0.0153(11) N17 0.0459(18) 0.0229(14) 0.0326(15) 0.0043(12) -0.0151(13) -0.0140(13) C14 0.0315(19) 0.0224(17) 0.0283(18) -0.0001(15) -0.0015(15) -0.0061(15) N20 0.0390(17) 0.0261(15) 0.0284(15) 0.0029(12) -0.0090(13) -0.0118(12) N13 0.0444(17) 0.0249(15) 0.0322(16) 0.0041(13) -0.0122(14) -0.0123(13) O24 0.0582(16) 0.0304(14) 0.0395(14) -0.0002(11) -0.0144(12) -0.0150(12) N15 0.0425(17) 0.0229(15) 0.0307(15) 0.0027(12) -0.0086(13) -0.0115(13) C11 0.038(2) 0.0269(18) 0.0258(18) -0.0034(15) -0.0064(15) -0.0104(15) C9 0.043(2) 0.0247(18) 0.0335(19) 0.0001(15) -0.0123(16) -0.0061(15) C1 0.0334(19) 0.0274(18) 0.0269(18) -0.0071(15) -0.0018(15) 0.0024(15) C12 0.045(2) 0.0248(18) 0.0280(18) 0.0018(14) -0.0071(16) -0.0073(16) C16 0.047(2) 0.0245(18) 0.0311(19) -0.0014(15) -0.0085(17) -0.0114(16) C23 0.0289(19) 0.033(2) 0.0316(19) 0.0010(16) -0.0042(15) -0.0064(16) C22 0.043(2) 0.0298(19) 0.038(2) 0.0075(16) -0.0136(17) -0.0136(16) C19 0.050(2) 0.0299(19) 0.0335(19) 0.0068(15) -0.0122(17) -0.0167(17) C21 0.050(2) 0.0233(18) 0.037(2) 0.0023(14) -0.0138(17) -0.0087(16) N4 0.0471(19) 0.0513(19) 0.0429(19) -0.0065(16) -0.0155(15) -0.0110(16) C18 0.051(2) 0.0242(18) 0.044(2) 0.0030(15) -0.0171(18) -0.0120(16) C3 0.049(2) 0.050(2) 0.035(2) -0.0007(17) -0.0114(18) -0.0067(19) C5 0.044(2) 0.038(2) 0.046(2) -0.0093(18) -0.0084(18) -0.0084(17) C30 0.061(3) 0.045(2) 0.055(2) -0.0015(19) -0.003(2) -0.015(2) C2 0.037(2) 0.0332(19) 0.0304(19) -0.0035(15) -0.0030(16) -0.0041(16) C6 0.044(2) 0.0291(19) 0.036(2) -0.0035(15) -0.0069(17) -0.0040(17) N8 0.079(3) 0.061(2) 0.058(2) 0.0131(19) -0.0140(19) -0.027(2) C26 0.046(2) 0.036(2) 0.049(2) 0.0017(17) -0.0233(18) -0.0088(17) C27 0.048(2) 0.073(3) 0.031(2) 0.0001(19) -0.0103(18) -0.018(2) C28 0.064(3) 0.046(2) 0.050(2) 0.0047(19) -0.016(2) -0.013(2) C7 0.050(2) 0.044(2) 0.030(2) 0.0045(17) -0.0111(18) -0.005(2) O29 0.0600(18) 0.0510(17) 0.0735(19) 0.0066(14) -0.0008(15) -0.0098(14) loop_ _atom_type_symbol _atom_type_description _atom_type_scat_dispersion_real _atom_type_scat_dispersion_imag _atom_type_scat_source C C 0.0033 0.0016 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' H H 0.0000 0.0000 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' N N 0.0061 0.0033 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' O O 0.0106 0.0060 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' loop_ _geom_angle_atom_site_label_1 _geom_angle_atom_site_label_2 _geom_angle_atom_site_label_3 _geom_angle C11 O10 C9 116.8(2) C23 O25 C26 116.6(2) C14 N17 C22 120.7(2) C14 N17 C18 118.2(2) C22 N17 C18 112.4(2) N13 C14 N15 125.3(3) N13 C14 N17 116.9(2) N15 C14 N17 117.8(3) C23 N20 C19 118.6(2) C23 N20 C21 124.4(3) C19 N20 C21 114.3(2) C14 N13 C12 117.0(3) C16 N15 C14 116.0(3) C12 C11 O10 126.7(3) C12 C11 C16 116.6(3) O10 C11 C16 116.7(3) O10 C9 C1 107.8(2) O10 C9 H9A 110.1 C1 C9 H9A 110.1 O10 C9 H9B 110.1 C1 C9 H9B 110.1 H9A C9 H9B 108.5 C6 C1 C2 116.8(3) C6 C1 C9 123.2(3) C2 C1 C9 120.0(3) N13 C12 C11 121.9(3) N13 C12 H12 119.0 C11 C12 H12 119.0 N15 C16 C11 123.1(3) N15 C16 H16 118.5 C11 C16 H16 118.5 O24 C23 O25 123.8(3) O24 C23 N20 124.5(3) O25 C23 N20 111.7(3) N17 C22 C21 110.9(3) N17 C22 H22A 109.5 C21 C22 H22A 109.5 N17 C22 H22B 109.5 C21 C22 H22B 109.5 H22A C22 H22B 108.1 N20 C19 C18 110.4(3) N20 C19 H19A 109.6 C18 C19 H19A 109.6 N20 C19 H19B 109.6 C18 C19 H19B 109.6 H19A C19 H19B 108.1 N20 C21 C22 111.7(3) N20 C21 H21A 109.3 C22 C21 H21A 109.3 N20 C21 H21B 109.3 C22 C21 H21B 109.3 H21A C21 H21B 108.0 C3 N4 C5 116.3(3) N17 C18 C19 110.8(3) N17 C18 H18A 109.5 C19 C18 H18A 109.5 N17 C18 H18B 109.5 C19 C18 H18B 109.5 H18A C18 H18B 108.1 N4 C3 C2 123.3(3) N4 C3 H3 118.4 C2 C3 H3 118.4 N4 C5 C6 124.4(3) N4 C5 H5 117.8 C6 C5 H5 117.8 O29 C30 C26 104.5(3) O29 C30 H30A 110.9 C26 C30 H30A 110.9 O29 C30 H30B 110.9 C26 C30 H30B 110.9 H30A C30 H30B 108.9 C1 C2 C3 119.6(3) C1 C2 C7 120.9(3) C3 C2 C7 119.5(3) C5 C6 C1 119.5(3) C5 C6 H6 120.2 C1 C6 H6 120.2 C30 C26 O25 108.0(3) C30 C26 C27 104.2(3) O25 C26 C27 107.2(3) C30 C26 H26 112.3 O25 C26 H26 112.3 C27 C26 H26 112.3 C28 C27 C26 101.2(3) C28 C27 H27A 111.5 C26 C27 H27A 111.5 C28 C27 H27B 111.5 C26 C27 H27B 111.5 H27A C27 H27B 109.3 O29 C28 C27 108.6(3) O29 C28 H28A 110.0 C27 C28 H28A 110.0 O29 C28 H28B 110.0 C27 C28 H28B 110.0 H28A C28 H28B 108.4 N8 C7 C2 178.0(4) C30 O29 C28 106.1(3) loop_ _geom_bond_atom_site_label_1 _geom_bond_atom_site_label_2 _geom_bond_distance O10 C11 1.372(3) O10 C9 1.424(4) O25 C23 1.347(4) O25 C26 1.469(4) N17 C14 1.377(4) N17 C22 1.459(4) N17 C18 1.461(4) C14 N13 1.336(4) C14 N15 1.343(4) N20 C23 1.351(4) N20 C19 1.451(4) N20 C21 1.467(4) N13 C12 1.339(4) O24 C23 1.216(4) N15 C16 1.328(4) C11 C12 1.371(4) C11 C16 1.381(4) C9 C1 1.505(4) C9 H9A 0.9900 C9 H9B 0.9900 C1 C6 1.379(4) C1 C2 1.394(4) C12 H12 0.9500 C16 H16 0.9500 C22 C21 1.511(4) C22 H22A 0.9900 C22 H22B 0.9900 C19 C18 1.488(4) C19 H19A 0.9900 C19 H19B 0.9900 C21 H21A 0.9900 C21 H21B 0.9900 N4 C3 1.328(5) N4 C5 1.334(4) C18 H18A 0.9900 C18 H18B 0.9900 C3 C2 1.394(5) C3 H3 0.9500 C5 C6 1.377(4) C5 H5 0.9500 C30 O29 1.420(4) C30 C26 1.462(5) C30 H30A 0.9900 C30 H30B 0.9900 C2 C7 1.440(5) C6 H6 0.9500 N8 C7 1.141(4) C26 C27 1.566(5) C26 H26 1.0000 C27 C28 1.508(5) C27 H27A 0.9900 C27 H27B 0.9900 C28 O29 1.443(5) C28 H28A 0.9900 C28 H28B 0.9900