#------------------------------------------------------------------------------ #$Date: 2015-09-08 14:08:00 +0300 (Tue, 08 Sep 2015) $ #$Revision: 155209 $ #$URL: file:///home/coder/svn-repositories/cod/cif/7/11/75/7117550.cif $ #------------------------------------------------------------------------------ # # This file is available in the Crystallography Open Database (COD), # http://www.crystallography.net/ # # All data on this site have been placed in the public domain by the # contributors. # data_7117550 loop_ _publ_author_name 'Alexander, Benjamin E.' 'Coles, Simon J.' 'Fox, Bridget C.' 'Khan, Tahmina F.' 'Maliszewski, Joseph' 'Perry, Alexis' 'Pitak, Mateusz B.' 'Whiteman, Matthew' 'Wood, Mark E.' _publ_section_title ; Investigating the generation of hydrogen sulfide from the phosphonamidodithioate slow-release donor GYY4137 ; _journal_issue 9 _journal_name_full 'Med. Chem. Commun.' _journal_page_first 1649 _journal_paper_doi 10.1039/C5MD00170F _journal_volume 6 _journal_year 2015 _chemical_formula_moiety 'C11 H15 N O2 P S2, C4 H10 N O' _chemical_formula_sum 'C15 H25 N2 O3 P S2' _chemical_formula_weight 376.46 _chemical_name_systematic ; ? ; _space_group_IT_number 15 _symmetry_cell_setting monoclinic _symmetry_space_group_name_Hall '-C 2yc' _symmetry_space_group_name_H-M 'C 1 2/c 1' _atom_sites_solution_hydrogens geom _atom_sites_solution_primary direct _atom_sites_solution_secondary difmap _audit_creation_method SHELXL-97 _audit_update_record ; 2015-03-12 deposited with the CCDC. 2015-07-23 downloaded from the CCDC. ; _cell_angle_alpha 90.00 _cell_angle_beta 101.4120(10) _cell_angle_gamma 90.00 _cell_formula_units_Z 8 _cell_length_a 24.2051(3) _cell_length_b 8.9799(2) _cell_length_c 17.2946(3) _cell_measurement_reflns_used 26732 _cell_measurement_temperature 120(2) _cell_measurement_theta_max 27.48 _cell_measurement_theta_min 2.91 _cell_volume 3684.82(11) _computing_cell_refinement 'DENZO (Otwinowski & Minor, 1997) & COLLECT (Hooft, R.W.W., 1998)' _computing_data_collection 'COLLECT (Hooft, R.W.W., 1998)' _computing_data_reduction 'DENZO (Otwinowski & Minor, 1997) & COLLECT (Hooft, R.W.W., 1998)' _computing_structure_refinement 'SHELXL-97 (Sheldrick, 2008)' _computing_structure_solution 'SHELXL-97 (Sheldrick, 2008)' _diffrn_ambient_temperature 120(2) _diffrn_detector_area_resol_mean '4096x4096pixels / 62x62mm' _diffrn_measured_fraction_theta_full 0.997 _diffrn_measured_fraction_theta_max 0.997 _diffrn_measurement_device_type 'Bruker-Nonius APEX II CCD camera on \k-goniostat' _diffrn_measurement_method '\f & \w scans' _diffrn_radiation_monochromator '10cm confocal mirrors' _diffrn_radiation_source 'Bruker-Nonius FR591 rotating anode' _diffrn_radiation_type MoK\a _diffrn_radiation_wavelength 0.71073 _diffrn_reflns_av_R_equivalents 0.0416 _diffrn_reflns_av_sigmaI/netI 0.0284 _diffrn_reflns_limit_h_max 31 _diffrn_reflns_limit_h_min -31 _diffrn_reflns_limit_k_max 11 _diffrn_reflns_limit_k_min -11 _diffrn_reflns_limit_l_max 22 _diffrn_reflns_limit_l_min -22 _diffrn_reflns_number 26236 _diffrn_reflns_theta_full 27.47 _diffrn_reflns_theta_max 27.47 _diffrn_reflns_theta_min 3.22 _exptl_absorpt_coefficient_mu 0.391 _exptl_absorpt_correction_T_max 0.9694 _exptl_absorpt_correction_T_min 0.9260 _exptl_absorpt_correction_type multi-scan _exptl_absorpt_process_details 'SADABS 2007/2 (Sheldrick, G.M., 2007)' _exptl_crystal_colour colourless _exptl_crystal_density_diffrn 1.357 _exptl_crystal_density_method 'not measured' _exptl_crystal_description block _exptl_crystal_F_000 1600 _exptl_crystal_size_max 0.20 _exptl_crystal_size_mid 0.12 _exptl_crystal_size_min 0.08 _refine_diff_density_max 0.301 _refine_diff_density_min -0.274 _refine_diff_density_rms 0.051 _refine_ls_extinction_method none _refine_ls_goodness_of_fit_ref 1.065 _refine_ls_hydrogen_treatment mixed _refine_ls_matrix_type full _refine_ls_number_parameters 217 _refine_ls_number_reflns 4230 _refine_ls_number_restraints 0 _refine_ls_restrained_S_all 1.065 _refine_ls_R_factor_all 0.0386 _refine_ls_R_factor_gt 0.0329 _refine_ls_shift/su_max 0.002 _refine_ls_shift/su_mean 0.000 _refine_ls_structure_factor_coef Fsqd _refine_ls_weighting_details 'calc w=1/[\s^2^(Fo^2^)+(0.0251P)^2^+4.9390P] where P=(Fo^2^+2Fc^2^)/3' _refine_ls_weighting_scheme calc _refine_ls_wR_factor_gt 0.0761 _refine_ls_wR_factor_ref 0.0804 _reflns_number_gt 3784 _reflns_number_total 4230 _reflns_threshold_expression >2\s(I) _cod_data_source_file c5md00170f2.cif _cod_data_source_block GYY4137-3 _cod_depositor_comments 'Adding full bibliography for 7117550.cif.' _cod_cif_authors_sg_H-M C2/c _cod_database_code 7117550 loop_ _symmetry_equiv_pos_as_xyz 'x, y, z' '-x, y, -z+1/2' 'x+1/2, y+1/2, z' '-x+1/2, y+1/2, -z+1/2' '-x, -y, -z' 'x, -y, z-1/2' '-x+1/2, -y+1/2, -z' 'x+1/2, -y+1/2, z-1/2' loop_ _atom_site_label _atom_site_type_symbol _atom_site_fract_x _atom_site_fract_y _atom_site_fract_z _atom_site_U_iso_or_equiv _atom_site_adp_type _atom_site_occupancy _atom_site_symmetry_multiplicity _atom_site_calc_flag _atom_site_refinement_flags C1 C 0.92005(9) -0.51445(19) 0.28273(11) 0.0384(4) Uani 1 1 d . H1A H 0.8833 -0.5434 0.2515 0.058 Uiso 1 1 calc R H1B H 0.9284 -0.5749 0.3308 0.058 Uiso 1 1 calc R H1C H 0.9493 -0.5305 0.2517 0.058 Uiso 1 1 calc R C2 C 0.90844(6) -0.25903(17) 0.24406(9) 0.0243(3) Uani 1 1 d . C3 C 0.90623(7) -0.11158(18) 0.26853(9) 0.0290(3) Uani 1 1 d . H3 H 0.9114 -0.0888 0.3231 0.035 Uiso 1 1 calc R C4 C 0.89654(7) 0.00118(18) 0.21341(9) 0.0283(3) Uani 1 1 d . H4 H 0.8951 0.1015 0.2304 0.034 Uiso 1 1 calc R C5 C 0.88882(6) -0.03048(17) 0.13283(9) 0.0228(3) Uani 1 1 d . C6 C 0.89019(6) -0.17809(17) 0.10922(9) 0.0233(3) Uani 1 1 d . H6 H 0.8845 -0.2009 0.0546 0.028 Uiso 1 1 calc R C7 C 0.89979(6) -0.29326(17) 0.16414(9) 0.0243(3) Uani 1 1 d . H7 H 0.9004 -0.3938 0.1473 0.029 Uiso 1 1 calc R C8 C 0.98851(6) 0.16569(17) 0.11259(9) 0.0231(3) Uani 1 1 d . H8A H 0.9887 0.0762 0.1461 0.028 Uiso 1 1 calc R H8B H 0.9841 0.2546 0.1447 0.028 Uiso 1 1 calc R C9 C 1.04350(6) 0.17548(17) 0.08314(9) 0.0241(3) Uani 1 1 d . H9A H 1.0754 0.1795 0.1288 0.029 Uiso 1 1 calc R H9B H 1.0480 0.0851 0.0522 0.029 Uiso 1 1 calc R C10 C 0.94287(6) 0.28782(17) -0.00707(9) 0.0241(3) Uani 1 1 d . H10A H 0.9366 0.3796 0.0218 0.029 Uiso 1 1 calc R H10B H 0.9123 0.2800 -0.0543 0.029 Uiso 1 1 calc R C11 C 0.99933(6) 0.29652(18) -0.03199(9) 0.0263(3) Uani 1 1 d . H11A H 1.0043 0.2076 -0.0638 0.032 Uiso 1 1 calc R H11B H 1.0002 0.3857 -0.0654 0.032 Uiso 1 1 calc R C12 C 0.70025(8) -0.0448(2) 0.05424(10) 0.0343(4) Uani 1 1 d . H12A H 0.7089 -0.0675 0.0019 0.041 Uiso 1 1 calc R H12B H 0.6589 -0.0490 0.0497 0.041 Uiso 1 1 calc R C13 C 0.72820(8) -0.1580(2) 0.11375(12) 0.0396(4) Uani 1 1 d . H13A H 0.7135 -0.2584 0.0974 0.047 Uiso 1 1 calc R H13B H 0.7693 -0.1580 0.1154 0.047 Uiso 1 1 calc R C14 C 0.71497(8) 0.1390(2) 0.16196(10) 0.0348(4) Uani 1 1 d . H14A H 0.6745 0.1479 0.1640 0.042 Uiso 1 1 calc R H14B H 0.7336 0.2347 0.1796 0.042 Uiso 1 1 calc R C15 C 0.74134(8) 0.0152(2) 0.21602(11) 0.0412(4) Uani 1 1 d . H15A H 0.7825 0.0134 0.2178 0.049 Uiso 1 1 calc R H15B H 0.7353 0.0349 0.2701 0.049 Uiso 1 1 calc R N1 N 0.72115(6) 0.10672(16) 0.07967(8) 0.0280(3) Uani 1 1 d . O3 O 0.71797(6) -0.12572(14) 0.19032(8) 0.0395(3) Uani 1 1 d . N3 N 0.94146(5) 0.15710(14) 0.04406(7) 0.0208(2) Uani 1 1 d . O1 O 0.91882(5) -0.36116(12) 0.30341(6) 0.0293(3) Uani 1 1 d . O2 O 1.04474(4) 0.30435(12) 0.03500(6) 0.0245(2) Uani 1 1 d . P1 P 0.876054(16) 0.11871(4) 0.06085(2) 0.02125(10) Uani 1 1 d . S1 S 0.828170(16) 0.04771(4) -0.03927(2) 0.02585(10) Uani 1 1 d . S2 S 0.843178(16) 0.29309(4) 0.10769(2) 0.02669(10) Uani 1 1 d . H4N H 0.7570(10) 0.119(2) 0.0757(12) 0.047(6) Uiso 1 1 d . H3N H 0.7027(9) 0.172(3) 0.0473(13) 0.044(6) Uiso 1 1 d . loop_ _atom_site_aniso_label _atom_site_aniso_U_11 _atom_site_aniso_U_22 _atom_site_aniso_U_33 _atom_site_aniso_U_23 _atom_site_aniso_U_13 _atom_site_aniso_U_12 C1 0.0601(12) 0.0233(9) 0.0319(9) 0.0071(7) 0.0092(8) 0.0099(8) C2 0.0246(7) 0.0238(8) 0.0241(7) 0.0043(6) 0.0039(6) -0.0007(6) C3 0.0386(9) 0.0261(8) 0.0212(7) 0.0000(6) 0.0029(6) -0.0028(7) C4 0.0359(9) 0.0217(8) 0.0264(8) -0.0003(6) 0.0039(6) -0.0024(6) C5 0.0208(7) 0.0229(7) 0.0242(7) 0.0035(6) 0.0033(5) -0.0028(6) C6 0.0225(7) 0.0251(8) 0.0226(7) 0.0011(6) 0.0051(6) 0.0004(6) C7 0.0262(7) 0.0204(7) 0.0267(7) 0.0002(6) 0.0063(6) 0.0018(6) C8 0.0226(7) 0.0215(7) 0.0237(7) 0.0011(6) 0.0012(6) -0.0010(6) C9 0.0226(7) 0.0191(7) 0.0290(8) -0.0006(6) 0.0013(6) 0.0000(6) C10 0.0237(7) 0.0240(8) 0.0241(7) 0.0049(6) 0.0031(6) -0.0004(6) C11 0.0255(8) 0.0288(8) 0.0245(7) 0.0014(6) 0.0048(6) -0.0040(6) C12 0.0405(9) 0.0309(9) 0.0323(9) 0.0004(7) 0.0096(7) -0.0051(7) C13 0.0479(11) 0.0251(9) 0.0484(11) 0.0036(8) 0.0161(9) 0.0022(8) C14 0.0415(10) 0.0298(9) 0.0343(9) 0.0007(7) 0.0102(7) 0.0001(7) C15 0.0440(10) 0.0458(11) 0.0321(9) 0.0056(8) 0.0032(8) -0.0014(9) N1 0.0242(7) 0.0275(7) 0.0327(7) 0.0084(6) 0.0070(6) 0.0012(5) O3 0.0469(7) 0.0338(7) 0.0391(7) 0.0126(6) 0.0113(6) 0.0006(6) N3 0.0201(6) 0.0199(6) 0.0214(6) 0.0029(5) 0.0019(5) -0.0011(5) O1 0.0408(6) 0.0220(6) 0.0239(5) 0.0044(4) 0.0031(5) 0.0005(5) O2 0.0229(5) 0.0224(5) 0.0275(5) 0.0004(4) 0.0034(4) -0.0040(4) P1 0.02080(19) 0.01938(19) 0.02301(19) 0.00232(14) 0.00298(14) -0.00078(14) S1 0.02490(19) 0.0236(2) 0.0262(2) 0.00132(15) -0.00172(14) -0.00171(14) S2 0.0288(2) 0.0226(2) 0.0295(2) 0.00013(15) 0.00785(15) 0.00265(15) loop_ _atom_type_symbol _atom_type_description _atom_type_scat_dispersion_real _atom_type_scat_dispersion_imag _atom_type_scat_source C C 0.0033 0.0016 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' H H 0.0000 0.0000 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' N N 0.0061 0.0033 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' O O 0.0106 0.0060 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' P P 0.1023 0.0942 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' S S 0.1246 0.1234 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' loop_ _geom_angle_atom_site_label_1 _geom_angle_atom_site_label_2 _geom_angle_atom_site_label_3 _geom_angle O1 C1 H1A 109.5 O1 C1 H1B 109.5 H1A C1 H1B 109.5 O1 C1 H1C 109.5 H1A C1 H1C 109.5 H1B C1 H1C 109.5 O1 C2 C7 124.69(14) O1 C2 C3 115.03(13) C7 C2 C3 120.28(14) C4 C3 C2 119.94(15) C4 C3 H3 120.0 C2 C3 H3 120.0 C3 C4 C5 120.71(15) C3 C4 H4 119.6 C5 C4 H4 119.6 C6 C5 C4 118.73(14) C6 C5 P1 120.92(11) C4 C5 P1 120.34(12) C5 C6 C7 121.24(14) C5 C6 H6 119.4 C7 C6 H6 119.4 C2 C7 C6 119.07(14) C2 C7 H7 120.5 C6 C7 H7 120.5 N3 C8 C9 108.80(12) N3 C8 H8A 109.9 C9 C8 H8A 109.9 N3 C8 H8B 109.9 C9 C8 H8B 109.9 H8A C8 H8B 108.3 O2 C9 C8 111.28(12) O2 C9 H9A 109.4 C8 C9 H9A 109.4 O2 C9 H9B 109.4 C8 C9 H9B 109.4 H9A C9 H9B 108.0 N3 C10 C11 109.95(12) N3 C10 H10A 109.7 C11 C10 H10A 109.7 N3 C10 H10B 109.7 C11 C10 H10B 109.7 H10A C10 H10B 108.2 O2 C11 C10 111.33(12) O2 C11 H11A 109.4 C10 C11 H11A 109.4 O2 C11 H11B 109.4 C10 C11 H11B 109.4 H11A C11 H11B 108.0 N1 C12 C13 109.54(15) N1 C12 H12A 109.8 C13 C12 H12A 109.8 N1 C12 H12B 109.8 C13 C12 H12B 109.8 H12A C12 H12B 108.2 O3 C13 C12 111.13(15) O3 C13 H13A 109.4 C12 C13 H13A 109.4 O3 C13 H13B 109.4 C12 C13 H13B 109.4 H13A C13 H13B 108.0 N1 C14 C15 109.80(15) N1 C14 H14A 109.7 C15 C14 H14A 109.7 N1 C14 H14B 109.7 C15 C14 H14B 109.7 H14A C14 H14B 108.2 O3 C15 C14 111.61(15) O3 C15 H15A 109.3 C14 C15 H15A 109.3 O3 C15 H15B 109.3 C14 C15 H15B 109.3 H15A C15 H15B 108.0 C12 N1 C14 111.59(13) C12 N1 H4N 111.5(14) C14 N1 H4N 109.5(14) C12 N1 H3N 109.1(14) C14 N1 H3N 110.2(14) H4N N1 H3N 104.6(19) C15 O3 C13 109.89(14) C10 N3 C8 109.55(11) C10 N3 P1 113.37(9) C8 N3 P1 118.07(10) C2 O1 C1 118.13(13) C9 O2 C11 109.28(11) N3 P1 C5 103.25(6) N3 P1 S1 108.56(5) C5 P1 S1 110.59(5) N3 P1 S2 111.66(5) C5 P1 S2 109.14(5) S1 P1 S2 113.19(2) loop_ _geom_bond_atom_site_label_1 _geom_bond_atom_site_label_2 _geom_bond_distance C1 O1 1.424(2) C1 H1A 0.9800 C1 H1B 0.9800 C1 H1C 0.9800 C2 O1 1.3623(18) C2 C7 1.391(2) C2 C3 1.394(2) C3 C4 1.379(2) C3 H3 0.9500 C4 C5 1.398(2) C4 H4 0.9500 C5 C6 1.389(2) C5 P1 1.8132(15) C6 C7 1.392(2) C6 H6 0.9500 C7 H7 0.9500 C8 N3 1.4744(18) C8 C9 1.519(2) C8 H8A 0.9900 C8 H8B 0.9900 C9 O2 1.4294(18) C9 H9A 0.9900 C9 H9B 0.9900 C10 N3 1.4741(18) C10 C11 1.514(2) C10 H10A 0.9900 C10 H10B 0.9900 C11 O2 1.4323(18) C11 H11A 0.9900 C11 H11B 0.9900 C12 N1 1.487(2) C12 C13 1.508(3) C12 H12A 0.9900 C12 H12B 0.9900 C13 O3 1.424(2) C13 H13A 0.9900 C13 H13B 0.9900 C14 N1 1.489(2) C14 C15 1.510(3) C14 H14A 0.9900 C14 H14B 0.9900 C15 O3 1.421(2) C15 H15A 0.9900 C15 H15B 0.9900 N1 H4N 0.89(2) N1 H3N 0.87(2) N3 P1 1.7003(12) P1 S1 1.9884(5) P1 S2 1.9992(5)