#------------------------------------------------------------------------------ #$Date: 2011-06-22 00:21:40 +0300 (Wed, 22 Jun 2011) $ #$Revision: 21273 $ #$URL: file:///home/coder/svn-repositories/cod/cif/7/7151809.cif $ #------------------------------------------------------------------------------ # # This file is available in the Crystallography Open Database (COD), # http://www.crystallography.net/ # # All data on this site have been placed in the public domain by the # contributors. # data_7151809 loop_ _publ_author_name 'Maity, Sibaprasad' 'Kumar, Pankaj' 'Haldar, Debasish' _publ_section_title ; An amyloid-like fibril-forming supramolecular cross-\b-structure of a model peptide: a crystallographic insight. ; _journal_issue 10 _journal_name_full 'Organic & biomolecular chemistry' _journal_page_first 3787 _journal_page_last 3791 _journal_volume 9 _journal_year 2011 _chemical_absolute_configuration syn _chemical_formula_moiety 'C20 H30 N2 O5' _chemical_formula_sum 'C20 H30 N2 O5' _chemical_formula_weight 378.46 _chemical_melting_point 356 _chemical_name_common methyl-2-(2-(tert-butoxycarbonylamino)-3-methylbutanamido)-3-phenylpropanoate _chemical_name_systematic ; ? ; _space_group_IT_number 19 _symmetry_cell_setting orthorhombic _symmetry_space_group_name_Hall 'P 2ac 2ab' _symmetry_space_group_name_H-M 'P 21 21 21' _atom_sites_solution_hydrogens geom _atom_sites_solution_primary direct _atom_sites_solution_secondary difmap _audit_creation_method SHELXL-97 _cell_angle_alpha 90.00 _cell_angle_beta 90.00 _cell_angle_gamma 90.00 _cell_formula_units_Z 4 _cell_length_a 5.1057(5) _cell_length_b 10.2051(12) _cell_length_c 40.956(4) _cell_measurement_reflns_used 2545 _cell_measurement_temperature 296(2) _cell_measurement_theta_max 21.00 _cell_measurement_theta_min 2.23 _cell_volume 2134.0(4) _computing_cell_refinement 'Bruker SMART' _computing_data_collection 'Bruker SMART' _computing_data_reduction 'Bruker SAINT' _computing_molecular_graphics 'Bruker SHELXTL' _computing_publication_material 'Bruker SHELXTL' _computing_structure_refinement 'SHELXL-97 (Sheldrick, 1997)' _computing_structure_solution 'SHELXS-97 (Sheldrick, 1990)' _diffrn_ambient_temperature 296(2) _diffrn_measured_fraction_theta_full 0.997 _diffrn_measured_fraction_theta_max 0.997 _diffrn_measurement_device_type 'CCD area detector' _diffrn_measurement_method 'phi and omega scans' _diffrn_radiation_monochromator graphite _diffrn_radiation_source 'fine-focus sealed tube' _diffrn_radiation_type MoK\a _diffrn_radiation_wavelength 0.71073 _diffrn_reflns_av_R_equivalents 0.0634 _diffrn_reflns_av_sigmaI/netI 0.0534 _diffrn_reflns_limit_h_max 5 _diffrn_reflns_limit_h_min -5 _diffrn_reflns_limit_k_max 10 _diffrn_reflns_limit_k_min -10 _diffrn_reflns_limit_l_max 42 _diffrn_reflns_limit_l_min -43 _diffrn_reflns_number 14620 _diffrn_reflns_theta_full 22.25 _diffrn_reflns_theta_max 22.25 _diffrn_reflns_theta_min 0.99 _exptl_absorpt_coefficient_mu 0.084 _exptl_absorpt_correction_type none _exptl_crystal_colour colourless _exptl_crystal_density_diffrn 1.178 _exptl_crystal_density_method 'not measured' _exptl_crystal_description rod _exptl_crystal_F_000 816 _exptl_crystal_size_max 0.41 _exptl_crystal_size_mid 0.23 _exptl_crystal_size_min 0.13 _refine_diff_density_max 0.165 _refine_diff_density_min -0.148 _refine_diff_density_rms 0.035 _refine_ls_abs_structure_details 'Flack H D (1983), Acta Cryst. A39, 876-881' _refine_ls_abs_structure_Flack -1(2) _refine_ls_extinction_method none _refine_ls_goodness_of_fit_ref 0.938 _refine_ls_hydrogen_treatment constr _refine_ls_matrix_type full _refine_ls_number_parameters 250 _refine_ls_number_reflns 2710 _refine_ls_number_restraints 0 _refine_ls_restrained_S_all 0.938 _refine_ls_R_factor_all 0.0694 _refine_ls_R_factor_gt 0.0453 _refine_ls_shift/su_max 0.026 _refine_ls_shift/su_mean 0.001 _refine_ls_structure_factor_coef Fsqd _refine_ls_weighting_details 'calc w=1/[\s^2^(Fo^2^)+(0.0811P)^2^+0.3763P] where P=(Fo^2^+2Fc^2^)/3' _refine_ls_weighting_scheme calc _refine_ls_wR_factor_gt 0.1091 _refine_ls_wR_factor_ref 0.1315 _reflns_number_gt 2070 _reflns_number_total 2710 _reflns_threshold_expression >2sigma(I) _[local]_cod_data_source_file c0ob01033b.txt _[local]_cod_data_source_block sm _[local]_cod_cif_authors_sg_H-M P2(1)2(1)2(1) _cod_depositor_comments ; The following automatic conversions were performed: '_symmetry_cell_setting' value 'Orthorhombic' changed to 'orthorhombic' according to '/home/saulius/struct/CIF-dictionaries/cif_core.dic' dictionary named 'cif_core.dic' version 2.4.1 from 2010-06-29. Automatic conversion script Id: cif_fix_enum 1555 2011-01-17 13:19:09Z saulius The following automatic conversions were performed: '_chemical_melting_point' value '356K' was changed to '356' - the value should be numeric and without a unit designator. Automatic conversion script Id: cif_fix_values 1569 2011-02-09 13:29:24Z adriana ; _cod_database_code 7151809 loop_ _symmetry_equiv_pos_as_xyz 'x, y, z' 'x+1/2, -y+1/2, -z' '-x, y+1/2, -z+1/2' '-x+1/2, -y, z+1/2' loop_ _atom_site_label _atom_site_type_symbol _atom_site_fract_x _atom_site_fract_y _atom_site_fract_z _atom_site_U_iso_or_equiv _atom_site_adp_type _atom_site_occupancy _atom_site_symmetry_multiplicity _atom_site_calc_flag _atom_site_refinement_flags _atom_site_disorder_assembly _atom_site_disorder_group O1 O 0.3739(4) 0.2581(3) 0.18307(5) 0.0539(7) Uani 1 1 d . . . N2 N 0.2741(5) 0.2795(3) 0.13109(6) 0.0421(7) Uani 1 1 d . . . H2 H 0.1150 0.2708 0.1376 0.050 Uiso 1 1 calc R . . O3 O 0.6997(5) 0.2739(3) 0.14577(6) 0.0597(7) Uani 1 1 d . . . O4 O 0.1018(4) 0.5065(2) 0.08817(6) 0.0539(7) Uani 1 1 d . . . O5 O 0.8619(6) 0.7766(3) 0.04990(6) 0.0806(9) Uani 1 1 d . . . N1 N 0.5418(5) 0.5140(3) 0.08958(6) 0.0383(7) Uani 1 1 d . . . H1 H 0.6822 0.4686 0.0922 0.046 Uiso 1 1 calc R . . O6 O 0.7144(5) 0.5864(2) 0.03198(6) 0.0613(8) Uani 1 1 d . . . C1 C 0.3649(8) 0.2346(6) 0.23973(10) 0.118(2) Uani 1 1 d . . . H1A H 0.2552 0.3110 0.2403 0.176 Uiso 1 1 calc R . . H1B H 0.4623 0.2286 0.2597 0.176 Uiso 1 1 calc R . . H1C H 0.2579 0.1579 0.2372 0.176 Uiso 1 1 calc R . . C2 C 0.5524(7) 0.2447(4) 0.21127(8) 0.0588(11) Uani 1 1 d . . . C3 C 0.4696(7) 0.2701(3) 0.15271(8) 0.0416(9) Uani 1 1 d . . . C4 C 0.3260(6) 0.3041(3) 0.09668(7) 0.0379(9) Uani 1 1 d . . . H4 H 0.5044 0.2746 0.0918 0.045 Uiso 1 1 calc R . . C5 C 0.3129(7) 0.4508(3) 0.09087(7) 0.0356(8) Uani 1 1 d . . . C6 C 0.5700(7) 0.6525(3) 0.08417(7) 0.0402(9) Uani 1 1 d . . . H6 H 0.3946 0.6881 0.0801 0.048 Uiso 1 1 calc R . . C7 C 0.6818(7) 0.7236(3) 0.11423(8) 0.0494(9) Uani 1 1 d . . . H7A H 0.8295 0.6741 0.1226 0.059 Uiso 1 1 calc R . . H7B H 0.7455 0.8091 0.1076 0.059 Uiso 1 1 calc R . . C8 C 0.4845(7) 0.7403(4) 0.14086(8) 0.0455(9) Uani 1 1 d . . . C9 C 0.4068(9) 0.6365(4) 0.16015(9) 0.0645(12) Uani 1 1 d . . . H9 H 0.4864 0.5551 0.1577 0.077 Uiso 1 1 calc R . . C10 C 0.2115(12) 0.6529(7) 0.18311(10) 0.0924(17) Uani 1 1 d . . . H10 H 0.1563 0.5820 0.1956 0.111 Uiso 1 1 calc R . . C11 C 0.0997(10) 0.7727(8) 0.18746(12) 0.101(2) Uani 1 1 d . . . H11 H -0.0329 0.7840 0.2028 0.121 Uiso 1 1 calc R . . C12 C 0.7195(9) 0.3665(5) 0.21456(10) 0.0761(13) Uani 1 1 d . . . H12A H 0.8402 0.3711 0.1966 0.114 Uiso 1 1 calc R . . H12B H 0.8151 0.3631 0.2347 0.114 Uiso 1 1 calc R . . H12C H 0.6091 0.4427 0.2144 0.114 Uiso 1 1 calc R . . C13 C 0.7134(9) 0.1225(4) 0.20798(11) 0.0811(14) Uani 1 1 d . . . H13A H 0.6010 0.0500 0.2028 0.122 Uiso 1 1 calc R . . H13B H 0.8021 0.1053 0.2282 0.122 Uiso 1 1 calc R . . H13C H 0.8399 0.1339 0.1909 0.122 Uiso 1 1 calc R . . C14 C 0.3716(9) 0.8582(5) 0.14653(11) 0.0745(13) Uani 1 1 d . . . H14 H 0.4254 0.9303 0.1344 0.089 Uiso 1 1 calc R . . C15 C 0.1824(12) 0.8743(7) 0.16944(14) 0.108(2) Uani 1 1 d . . . H15 H 0.1092 0.9567 0.1727 0.129 Uiso 1 1 calc R . . C16 C 0.7340(7) 0.6800(4) 0.05403(8) 0.0471(9) Uani 1 1 d . . . C17 C 0.8721(10) 0.6006(5) 0.00281(9) 0.0829(15) Uani 1 1 d . . . H17A H 0.8268 0.6808 -0.0080 0.124 Uiso 1 1 calc R . . H17B H 0.8401 0.5280 -0.0115 0.124 Uiso 1 1 calc R . . H17C H 1.0541 0.6024 0.0087 0.124 Uiso 1 1 calc R . . C18 C 0.1381(7) 0.2313(3) 0.07418(8) 0.0484(9) Uani 1 1 d . . . H18 H -0.0377 0.2673 0.0776 0.058 Uiso 1 1 calc R . . C19 C 0.2143(10) 0.2567(4) 0.03908(8) 0.0819(14) Uani 1 1 d . . . H19A H 0.3912 0.2281 0.0355 0.123 Uiso 1 1 calc R . . H19B H 0.2014 0.3488 0.0346 0.123 Uiso 1 1 calc R . . H19C H 0.0987 0.2094 0.0248 0.123 Uiso 1 1 calc R . . C20 C 0.1276(11) 0.0859(4) 0.08131(11) 0.0860(15) Uani 1 1 d . . . H20A H 0.0092 0.0443 0.0664 0.129 Uiso 1 1 calc R . . H20B H 0.0677 0.0724 0.1033 0.129 Uiso 1 1 calc R . . H20C H 0.2993 0.0489 0.0788 0.129 Uiso 1 1 calc R . . loop_ _atom_site_aniso_label _atom_site_aniso_U_11 _atom_site_aniso_U_22 _atom_site_aniso_U_33 _atom_site_aniso_U_23 _atom_site_aniso_U_13 _atom_site_aniso_U_12 O1 0.0305(13) 0.0983(19) 0.0330(13) 0.0124(13) 0.0003(11) 0.0066(14) N2 0.0257(15) 0.066(2) 0.0345(16) 0.0082(13) 0.0058(13) 0.0005(14) O3 0.0236(14) 0.105(2) 0.0507(15) 0.0042(14) 0.0023(11) 0.0015(14) O4 0.0228(14) 0.0571(16) 0.0819(19) 0.0025(13) 0.0004(13) 0.0062(13) O5 0.111(3) 0.0656(19) 0.0653(18) 0.0003(14) 0.0234(17) -0.034(2) N1 0.0272(16) 0.0428(17) 0.0450(17) 0.0030(13) -0.0018(14) 0.0037(13) O6 0.0752(19) 0.0662(18) 0.0424(15) -0.0049(13) 0.0066(14) -0.0109(15) C1 0.056(3) 0.253(7) 0.044(2) 0.049(4) -0.004(2) 0.012(4) C2 0.035(2) 0.101(3) 0.040(2) 0.017(2) -0.0076(18) 0.008(2) C3 0.032(2) 0.056(2) 0.036(2) 0.0030(17) -0.0009(18) 0.0032(19) C4 0.0274(19) 0.049(2) 0.037(2) -0.0016(16) 0.0074(16) 0.0036(16) C5 0.029(2) 0.046(2) 0.0319(18) -0.0033(15) 0.0015(16) 0.0017(18) C6 0.0328(19) 0.041(2) 0.046(2) 0.0004(16) -0.0006(17) 0.0017(16) C7 0.044(2) 0.049(2) 0.055(2) -0.0062(17) 0.0007(18) -0.0040(19) C8 0.042(2) 0.055(2) 0.040(2) -0.0053(19) -0.0031(16) 0.007(2) C9 0.083(3) 0.065(3) 0.046(2) -0.003(2) 0.001(2) -0.008(2) C10 0.094(4) 0.138(5) 0.045(3) -0.004(3) 0.009(3) -0.042(4) C11 0.055(3) 0.201(7) 0.048(3) -0.030(4) 0.010(2) -0.001(4) C12 0.077(3) 0.083(3) 0.069(3) -0.011(2) -0.024(3) 0.010(3) C13 0.076(3) 0.075(3) 0.092(3) 0.015(3) -0.026(3) 0.004(3) C14 0.085(3) 0.070(3) 0.069(3) -0.003(2) 0.012(3) 0.023(3) C15 0.092(4) 0.153(6) 0.078(4) -0.037(4) 0.014(3) 0.053(4) C16 0.043(2) 0.052(2) 0.046(2) 0.0014(19) 0.0015(19) -0.0013(19) C17 0.115(4) 0.092(4) 0.041(2) 0.000(2) 0.023(3) -0.002(3) C18 0.050(2) 0.051(2) 0.043(2) -0.0037(17) -0.0015(17) -0.0004(19) C19 0.121(4) 0.084(3) 0.042(2) -0.006(2) -0.008(2) -0.012(3) C20 0.115(4) 0.064(3) 0.079(3) -0.007(2) -0.006(3) -0.028(3) loop_ _atom_type_symbol _atom_type_description _atom_type_scat_dispersion_real _atom_type_scat_dispersion_imag _atom_type_scat_source C C 0.0033 0.0016 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' H H 0.0000 0.0000 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' N N 0.0061 0.0033 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' O O 0.0106 0.0060 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' loop_ _geom_angle_atom_site_label_1 _geom_angle_atom_site_label_2 _geom_angle_atom_site_label_3 _geom_angle _geom_angle_site_symmetry_1 _geom_angle_site_symmetry_3 _geom_angle_publ_flag C3 O1 C2 120.6(2) . . ? C3 N2 C4 121.2(3) . . ? C3 N2 H2 119.4 . . ? C4 N2 H2 119.4 . . ? C5 N1 C6 124.6(3) . . ? C5 N1 H1 117.7 . . ? C6 N1 H1 117.7 . . ? C16 O6 C17 116.8(3) . . ? C2 C1 H1A 109.5 . . ? C2 C1 H1B 109.5 . . ? H1A C1 H1B 109.5 . . ? C2 C1 H1C 109.5 . . ? H1A C1 H1C 109.5 . . ? H1B C1 H1C 109.5 . . ? O1 C2 C13 110.2(3) . . ? O1 C2 C1 102.6(3) . . ? C13 C2 C1 111.1(4) . . ? O1 C2 C12 109.9(3) . . ? C13 C2 C12 112.5(3) . . ? C1 C2 C12 110.1(4) . . ? O3 C3 N2 124.5(3) . . ? O3 C3 O1 125.1(3) . . ? N2 C3 O1 110.4(3) . . ? N2 C4 C5 108.3(2) . . ? N2 C4 C18 112.8(3) . . ? C5 C4 C18 111.0(3) . . ? N2 C4 H4 108.2 . . ? C5 C4 H4 108.2 . . ? C18 C4 H4 108.2 . . ? O4 C5 N1 122.8(3) . . ? O4 C5 C4 120.8(3) . . ? N1 C5 C4 116.3(3) . . ? N1 C6 C16 111.2(3) . . ? N1 C6 C7 112.2(3) . . ? C16 C6 C7 111.0(3) . . ? N1 C6 H6 107.4 . . ? C16 C6 H6 107.4 . . ? C7 C6 H6 107.4 . . ? C8 C7 C6 112.8(3) . . ? C8 C7 H7A 109.0 . . ? C6 C7 H7A 109.0 . . ? C8 C7 H7B 109.0 . . ? C6 C7 H7B 109.0 . . ? H7A C7 H7B 107.8 . . ? C14 C8 C9 117.5(4) . . ? C14 C8 C7 120.9(3) . . ? C9 C8 C7 121.6(4) . . ? C8 C9 C10 120.3(4) . . ? C8 C9 H9 119.9 . . ? C10 C9 H9 119.9 . . ? C11 C10 C9 120.1(5) . . ? C11 C10 H10 120.0 . . ? C9 C10 H10 120.0 . . ? C15 C11 C10 119.4(5) . . ? C15 C11 H11 120.3 . . ? C10 C11 H11 120.3 . . ? C2 C12 H12A 109.5 . . ? C2 C12 H12B 109.5 . . ? H12A C12 H12B 109.5 . . ? C2 C12 H12C 109.5 . . ? H12A C12 H12C 109.5 . . ? H12B C12 H12C 109.5 . . ? C2 C13 H13A 109.5 . . ? C2 C13 H13B 109.5 . . ? H13A C13 H13B 109.5 . . ? C2 C13 H13C 109.5 . . ? H13A C13 H13C 109.5 . . ? H13B C13 H13C 109.5 . . ? C8 C14 C15 122.0(5) . . ? C8 C14 H14 119.0 . . ? C15 C14 H14 119.0 . . ? C11 C15 C14 120.7(5) . . ? C11 C15 H15 119.6 . . ? C14 C15 H15 119.6 . . ? O5 C16 O6 122.9(3) . . ? O5 C16 C6 124.7(3) . . ? O6 C16 C6 112.4(3) . . ? O6 C17 H17A 109.5 . . ? O6 C17 H17B 109.5 . . ? H17A C17 H17B 109.5 . . ? O6 C17 H17C 109.5 . . ? H17A C17 H17C 109.5 . . ? H17B C17 H17C 109.5 . . ? C19 C18 C20 111.2(3) . . ? C19 C18 C4 109.2(3) . . ? C20 C18 C4 112.6(3) . . ? C19 C18 H18 107.9 . . ? C20 C18 H18 107.9 . . ? C4 C18 H18 107.9 . . ? C18 C19 H19A 109.5 . . ? C18 C19 H19B 109.5 . . ? H19A C19 H19B 109.5 . . ? C18 C19 H19C 109.5 . . ? H19A C19 H19C 109.5 . . ? H19B C19 H19C 109.5 . . ? C18 C20 H20A 109.5 . . ? C18 C20 H20B 109.5 . . ? H20A C20 H20B 109.5 . . ? C18 C20 H20C 109.5 . . ? H20A C20 H20C 109.5 . . ? H20B C20 H20C 109.5 . . ? loop_ _geom_bond_atom_site_label_1 _geom_bond_atom_site_label_2 _geom_bond_distance _geom_bond_site_symmetry_2 _geom_bond_publ_flag O1 C3 1.342(4) . ? O1 C2 1.477(4) . ? N2 C3 1.338(4) . ? N2 C4 1.456(4) . ? N2 H2 0.8600 . ? O3 C3 1.210(4) . ? O4 C5 1.223(4) . ? O5 C16 1.194(4) . ? N1 C5 1.336(4) . ? N1 C6 1.438(4) . ? N1 H1 0.8600 . ? O6 C16 1.318(4) . ? O6 C17 1.448(4) . ? C1 C2 1.512(5) . ? C1 H1A 0.9600 . ? C1 H1B 0.9600 . ? C1 H1C 0.9600 . ? C2 C13 1.500(5) . ? C2 C12 1.514(6) . ? C4 C5 1.517(4) . ? C4 C18 1.523(5) . ? C4 H4 0.9800 . ? C6 C16 1.518(5) . ? C6 C7 1.539(4) . ? C6 H6 0.9800 . ? C7 C8 1.495(5) . ? C7 H7A 0.9700 . ? C7 H7B 0.9700 . ? C8 C14 1.354(5) . ? C8 C9 1.380(5) . ? C9 C10 1.381(6) . ? C9 H9 0.9300 . ? C10 C11 1.361(7) . ? C10 H10 0.9300 . ? C11 C15 1.341(8) . ? C11 H11 0.9300 . ? C12 H12A 0.9600 . ? C12 H12B 0.9600 . ? C12 H12C 0.9600 . ? C13 H13A 0.9600 . ? C13 H13B 0.9600 . ? C13 H13C 0.9600 . ? C14 C15 1.357(7) . ? C14 H14 0.9300 . ? C15 H15 0.9300 . ? C17 H17A 0.9600 . ? C17 H17B 0.9600 . ? C17 H17C 0.9600 . ? C18 C19 1.512(5) . ? C18 C20 1.513(5) . ? C18 H18 0.9800 . ? C19 H19A 0.9600 . ? C19 H19B 0.9600 . ? C19 H19C 0.9600 . ? C20 H20A 0.9600 . ? C20 H20B 0.9600 . ? C20 H20C 0.9600 . ?