#------------------------------------------------------------------------------ #$Date: 2011-06-21 20:18:25 +0300 (Tue, 21 Jun 2011) $ #$Revision: 21010 $ #$URL: file:///home/coder/svn-repositories/cod/cif/7/7205787.cif $ #------------------------------------------------------------------------------ # # This file is available in the Crystallography Open Database (COD), # http://www.crystallography.net/ # # All data on this site have been placed in the public domain by the # contributors. # data_7205787 loop_ _publ_author_name 'Jacob, C.' 'da Piedade, F\'atima M.' 'Robalo, M. Paula' 'Duarte, M. Teresa' _publ_section_title ; Evaluation of intermolecular interactions in thioxanthone derivatives: substituent effect on crystal diversity ; _journal_issue 7 _journal_name_full CrystEngComm _journal_page_first 2604 _journal_volume 13 _journal_year 2011 _chemical_formula_sum 'C13 H8 N2 O3 S' _chemical_formula_weight 272.27 _chemical_name_systematic ; ? ; _space_group_IT_number 14 _symmetry_cell_setting monoclinic _symmetry_space_group_name_Hall '-P 2yn' _symmetry_space_group_name_H-M 'P 1 21/n 1' _atom_sites_solution_hydrogens geom _atom_sites_solution_primary direct _atom_sites_solution_secondary difmap _audit_creation_method SHELXL-97 _cell_angle_alpha 90.00 _cell_angle_beta 99.656(14) _cell_angle_gamma 90.00 _cell_formula_units_Z 4 _cell_length_a 7.665(3) _cell_length_b 19.245(7) _cell_length_c 8.027(2) _cell_measurement_reflns_used 2194 _cell_measurement_temperature 293(2) _cell_measurement_theta_max 27.64 _cell_measurement_theta_min 2.78 _cell_volume 1167.3(7) _computing_cell_refinement 'Bruker SMART' _computing_data_collection 'Bruker SMART' _computing_data_reduction 'Bruker SAINT' _computing_structure_refinement 'SHELXL-97 (Sheldrick, 2008)' _computing_structure_solution 'Bruker SHELXTL' _diffrn_ambient_temperature 293(2) _diffrn_measured_fraction_theta_full 0.985 _diffrn_measured_fraction_theta_max 0.985 _diffrn_measurement_device_type 'CCD area detector' _diffrn_measurement_method 'phi and omega scans' _diffrn_radiation_monochromator graphite _diffrn_radiation_source 'fine-focus sealed tube' _diffrn_radiation_type MoK\a _diffrn_radiation_wavelength 0.71073 _diffrn_reflns_av_R_equivalents 0.0411 _diffrn_reflns_av_sigmaI/netI 0.0444 _diffrn_reflns_limit_h_max 10 _diffrn_reflns_limit_h_min -10 _diffrn_reflns_limit_k_max 25 _diffrn_reflns_limit_k_min -25 _diffrn_reflns_limit_l_max 10 _diffrn_reflns_limit_l_min -10 _diffrn_reflns_number 9608 _diffrn_reflns_theta_full 27.83 _diffrn_reflns_theta_max 27.83 _diffrn_reflns_theta_min 2.78 _exptl_absorpt_coefficient_mu 0.282 _exptl_absorpt_correction_T_max 0.9860 _exptl_absorpt_correction_T_min 0.9457 _exptl_absorpt_correction_type multi-scan _exptl_crystal_density_diffrn 1.549 _exptl_crystal_density_method 'not measured' _exptl_crystal_description plate _exptl_crystal_F_000 560 _exptl_crystal_size_max 0.20 _exptl_crystal_size_mid 0.05 _exptl_crystal_size_min 0.05 _refine_diff_density_max 0.269 _refine_diff_density_min -0.226 _refine_diff_density_rms 0.054 _refine_ls_extinction_method none _refine_ls_goodness_of_fit_ref 1.015 _refine_ls_hydrogen_treatment mixed _refine_ls_matrix_type full _refine_ls_number_parameters 173 _refine_ls_number_reflns 2727 _refine_ls_number_restraints 0 _refine_ls_restrained_S_all 1.015 _refine_ls_R_factor_all 0.0630 _refine_ls_R_factor_gt 0.0377 _refine_ls_shift/su_max 0.001 _refine_ls_shift/su_mean 0.000 _refine_ls_structure_factor_coef Fsqd _refine_ls_weighting_details 'calc w=1/[\s^2^(Fo^2^)+(0.0465P)^2^+0.0000P] where P=(Fo^2^+2Fc^2^)/3' _refine_ls_weighting_scheme calc _refine_ls_wR_factor_gt 0.0821 _refine_ls_wR_factor_ref 0.0926 _reflns_number_gt 1999 _reflns_number_total 2727 _reflns_threshold_expression >2\s(I) _[local]_cod_data_source_file c0ce00783h.txt _[local]_cod_data_source_block compound4 _[local]_cod_cif_authors_sg_H-M P21/n _cod_depositor_comments ; The following automatic conversions were performed: '_symmetry_cell_setting' value 'Monoclinic' changed to 'monoclinic' according to '/home/saulius/struct/CIF-dictionaries/cif_core.dic' dictionary named 'cif_core.dic' version 2.4.1 from 2010-06-29. Automatic conversion script Id: cif_fix_enum 1555 2011-01-17 13:19:09Z saulius ; _cod_database_code 7205787 loop_ _symmetry_equiv_pos_as_xyz 'x, y, z' '-x+1/2, y+1/2, -z+1/2' '-x, -y, -z' 'x-1/2, -y-1/2, z-1/2' loop_ _atom_site_label _atom_site_type_symbol _atom_site_fract_x _atom_site_fract_y _atom_site_fract_z _atom_site_U_iso_or_equiv _atom_site_adp_type _atom_site_occupancy _atom_site_symmetry_multiplicity _atom_site_calc_flag _atom_site_refinement_flags _atom_site_disorder_assembly _atom_site_disorder_group N1 N 0.4081(2) 0.30470(9) 0.6382(2) 0.0353(4) Uani 1 1 d . . . H1A H 0.5100(18) 0.3201(3) 0.6288(3) 0.042 Uiso 1 1 calc R . . H1B H 0.3389(12) 0.3291(5) 0.6867(9) 0.042 Uiso 1 1 calc R . . C1 C 0.3554(2) 0.24048(9) 0.5752(2) 0.0246(4) Uani 1 1 d . . . C2 C 0.1854(2) 0.21438(9) 0.5882(2) 0.0252(4) Uani 1 1 d . . . H2 H 0.1104 0.2406 0.6432 0.030 Uiso 1 1 calc R . . C3 C 0.1293(2) 0.15078(9) 0.5207(2) 0.0238(4) Uani 1 1 d . . . H3 H 0.0166 0.1349 0.5294 0.029 Uiso 1 1 calc R . . C4 C 0.2410(2) 0.10943(9) 0.4383(2) 0.0206(4) Uani 1 1 d . . . C5 C 0.4122(2) 0.13387(9) 0.4269(2) 0.0203(4) Uani 1 1 d . . . C6 C 0.4666(2) 0.19918(9) 0.4948(2) 0.0238(4) Uani 1 1 d . . . H6 H 0.5791 0.2153 0.4862 0.029 Uiso 1 1 calc R . . S1 S 0.15291(5) 0.03021(2) 0.35617(6) 0.02416(13) Uani 1 1 d . . . C7 C 0.3262(2) -0.00779(9) 0.2742(2) 0.0215(4) Uani 1 1 d . . . C8 C 0.2910(2) -0.07424(9) 0.2007(2) 0.0251(4) Uani 1 1 d . . . H8 H 0.1805 -0.0945 0.1982 0.030 Uiso 1 1 calc R . . C9 C 0.4198(2) -0.10913(9) 0.1330(2) 0.0261(4) Uani 1 1 d . . . H9 H 0.3973 -0.1529 0.0850 0.031 Uiso 1 1 calc R . . C10 C 0.5845(2) -0.07752(9) 0.1376(2) 0.0212(4) Uani 1 1 d . . . N2 N 0.72141(19) -0.11386(8) 0.06216(19) 0.0267(3) Uani 1 1 d . . . O1 O 0.86753(17) -0.08691(7) 0.07135(19) 0.0385(4) Uani 1 1 d . . . O2 O 0.68196(18) -0.17000(7) -0.00933(18) 0.0400(4) Uani 1 1 d . . . C11 C 0.6239(2) -0.01301(9) 0.2079(2) 0.0215(4) Uani 1 1 d . . . H11 H 0.7352 0.0064 0.2091 0.026 Uiso 1 1 calc R . . C12 C 0.4935(2) 0.02344(8) 0.2781(2) 0.0193(3) Uani 1 1 d . . . C13 C 0.5427(2) 0.09332(9) 0.3496(2) 0.0206(4) Uani 1 1 d . . . O3 O 0.69134(16) 0.11678(7) 0.34514(17) 0.0308(3) Uani 1 1 d . . . loop_ _atom_site_aniso_label _atom_site_aniso_U_11 _atom_site_aniso_U_22 _atom_site_aniso_U_33 _atom_site_aniso_U_23 _atom_site_aniso_U_13 _atom_site_aniso_U_12 N1 0.0296(8) 0.0342(9) 0.0438(11) -0.0112(8) 0.0115(8) -0.0015(7) C1 0.0259(9) 0.0274(9) 0.0196(9) 0.0014(7) 0.0015(7) 0.0040(7) C2 0.0243(9) 0.0319(10) 0.0204(10) 0.0035(7) 0.0062(7) 0.0084(7) C3 0.0185(8) 0.0331(10) 0.0202(10) 0.0055(7) 0.0046(7) 0.0032(7) C4 0.0183(8) 0.0258(9) 0.0179(9) 0.0049(7) 0.0034(7) 0.0025(6) C5 0.0180(8) 0.0251(9) 0.0180(9) 0.0040(7) 0.0036(7) 0.0013(6) C6 0.0199(8) 0.0286(9) 0.0231(10) 0.0025(7) 0.0045(7) -0.0010(7) S1 0.0146(2) 0.0303(2) 0.0288(3) -0.00128(19) 0.00748(17) -0.00186(17) C7 0.0168(8) 0.0294(9) 0.0184(9) 0.0041(7) 0.0029(6) 0.0019(7) C8 0.0173(8) 0.0314(10) 0.0261(10) -0.0016(8) 0.0020(7) -0.0042(7) C9 0.0239(9) 0.0293(10) 0.0240(10) -0.0024(8) 0.0012(7) -0.0006(7) C10 0.0188(8) 0.0287(9) 0.0160(9) 0.0018(7) 0.0022(7) 0.0063(7) N2 0.0218(8) 0.0359(9) 0.0218(8) 0.0014(7) 0.0019(6) 0.0093(6) O1 0.0238(7) 0.0473(9) 0.0468(9) -0.0051(7) 0.0131(6) 0.0041(6) O2 0.0363(8) 0.0432(8) 0.0398(9) -0.0170(7) 0.0041(7) 0.0071(7) C11 0.0158(7) 0.0301(9) 0.0187(9) 0.0054(7) 0.0033(7) 0.0021(7) C12 0.0150(7) 0.0265(9) 0.0165(8) 0.0048(7) 0.0032(6) 0.0016(6) C13 0.0174(8) 0.0271(9) 0.0177(9) 0.0031(7) 0.0044(7) -0.0005(6) O3 0.0197(6) 0.0312(7) 0.0441(9) -0.0032(6) 0.0129(6) -0.0048(5) loop_ _atom_type_symbol _atom_type_description _atom_type_scat_dispersion_real _atom_type_scat_dispersion_imag _atom_type_scat_source C C 0.0033 0.0016 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' H H 0.0000 0.0000 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' N N 0.0061 0.0033 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' O O 0.0106 0.0060 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' S S 0.1246 0.1234 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' loop_ _geom_angle_atom_site_label_1 _geom_angle_atom_site_label_2 _geom_angle_atom_site_label_3 _geom_angle _geom_angle_site_symmetry_1 _geom_angle_site_symmetry_3 _geom_angle_publ_flag C1 N1 H1A 120.0 . . ? C1 N1 H1B 120.0 . . ? H1A N1 H1B 120.0 . . ? N1 C1 C6 121.15(17) . . ? N1 C1 C2 120.73(16) . . ? C6 C1 C2 118.12(16) . . ? C3 C2 C1 121.10(16) . . ? C3 C2 H2 119.5 . . ? C1 C2 H2 119.5 . . ? C2 C3 C4 120.74(16) . . ? C2 C3 H3 119.6 . . ? C4 C3 H3 119.6 . . ? C3 C4 C5 119.09(16) . . ? C3 C4 S1 116.19(13) . . ? C5 C4 S1 124.72(13) . . ? C6 C5 C4 119.42(15) . . ? C6 C5 C13 117.13(15) . . ? C4 C5 C13 123.43(15) . . ? C1 C6 C5 121.52(16) . . ? C1 C6 H6 119.2 . . ? C5 C6 H6 119.2 . . ? C7 S1 C4 103.76(8) . . ? C12 C7 C8 120.20(15) . . ? C12 C7 S1 124.13(14) . . ? C8 C7 S1 115.67(12) . . ? C9 C8 C7 120.37(16) . . ? C9 C8 H8 119.8 . . ? C7 C8 H8 119.8 . . ? C8 C9 C10 118.76(17) . . ? C8 C9 H9 120.6 . . ? C10 C9 H9 120.6 . . ? C11 C10 C9 122.61(15) . . ? C11 C10 N2 118.34(15) . . ? C9 C10 N2 119.04(16) . . ? O1 N2 O2 123.21(15) . . ? O1 N2 C10 118.76(15) . . ? O2 N2 C10 118.03(15) . . ? C10 C11 C12 119.36(15) . . ? C10 C11 H11 120.3 . . ? C12 C11 H11 120.3 . . ? C7 C12 C11 118.70(16) . . ? C7 C12 C13 124.37(15) . . ? C11 C12 C13 116.93(14) . . ? O3 C13 C5 120.71(16) . . ? O3 C13 C12 119.78(15) . . ? C5 C13 C12 119.51(14) . . ? loop_ _geom_bond_atom_site_label_1 _geom_bond_atom_site_label_2 _geom_bond_distance _geom_bond_site_symmetry_2 _geom_bond_publ_flag N1 C1 1.370(2) . ? N1 H1A 0.8505 . ? N1 H1B 0.8505 . ? C1 C6 1.400(2) . ? C1 C2 1.416(2) . ? C2 C3 1.378(3) . ? C2 H2 0.9300 . ? C3 C4 1.411(2) . ? C3 H3 0.9300 . ? C4 C5 1.412(2) . ? C4 S1 1.7510(19) . ? C5 C6 1.405(2) . ? C5 C13 1.484(2) . ? C6 H6 0.9300 . ? S1 C7 1.7395(17) . ? C7 C12 1.412(2) . ? C7 C8 1.415(2) . ? C8 C9 1.379(2) . ? C8 H8 0.9300 . ? C9 C10 1.397(2) . ? C9 H9 0.9300 . ? C10 C11 1.376(2) . ? C10 N2 1.473(2) . ? N2 O1 1.225(2) . ? N2 O2 1.237(2) . ? C11 C12 1.413(2) . ? C11 H11 0.9300 . ? C12 C13 1.486(2) . ? C13 O3 1.232(2) . ? loop_ _geom_torsion_atom_site_label_1 _geom_torsion_atom_site_label_2 _geom_torsion_atom_site_label_3 _geom_torsion_atom_site_label_4 _geom_torsion _geom_torsion_site_symmetry_1 _geom_torsion_site_symmetry_2 _geom_torsion_site_symmetry_3 _geom_torsion_site_symmetry_4 _geom_torsion_publ_flag N1 C1 C2 C3 178.00(16) . . . . ? C6 C1 C2 C3 -1.3(3) . . . . ? C1 C2 C3 C4 0.8(3) . . . . ? C2 C3 C4 C5 0.5(3) . . . . ? C2 C3 C4 S1 -179.33(13) . . . . ? C3 C4 C5 C6 -1.1(2) . . . . ? S1 C4 C5 C6 178.62(13) . . . . ? C3 C4 C5 C13 177.36(16) . . . . ? S1 C4 C5 C13 -2.9(2) . . . . ? N1 C1 C6 C5 -178.71(16) . . . . ? C2 C1 C6 C5 0.6(3) . . . . ? C4 C5 C6 C1 0.6(3) . . . . ? C13 C5 C6 C1 -177.98(16) . . . . ? C3 C4 S1 C7 -177.47(13) . . . . ? C5 C4 S1 C7 2.76(17) . . . . ? C4 S1 C7 C12 -0.77(17) . . . . ? C4 S1 C7 C8 179.05(13) . . . . ? C12 C7 C8 C9 0.2(3) . . . . ? S1 C7 C8 C9 -179.61(14) . . . . ? C7 C8 C9 C10 -0.3(3) . . . . ? C8 C9 C10 C11 0.3(3) . . . . ? C8 C9 C10 N2 -178.71(16) . . . . ? C11 C10 N2 O1 3.2(2) . . . . ? C9 C10 N2 O1 -177.70(16) . . . . ? C11 C10 N2 O2 -175.94(15) . . . . ? C9 C10 N2 O2 3.1(2) . . . . ? C9 C10 C11 C12 -0.2(3) . . . . ? N2 C10 C11 C12 178.78(14) . . . . ? C8 C7 C12 C11 -0.1(3) . . . . ? S1 C7 C12 C11 179.66(13) . . . . ? C8 C7 C12 C13 178.97(16) . . . . ? S1 C7 C12 C13 -1.2(2) . . . . ? C10 C11 C12 C7 0.2(2) . . . . ? C10 C11 C12 C13 -179.03(15) . . . . ? C6 C5 C13 O3 -0.4(2) . . . . ? C4 C5 C13 O3 -178.94(16) . . . . ? C6 C5 C13 C12 179.08(15) . . . . ? C4 C5 C13 C12 0.5(2) . . . . ? C7 C12 C13 O3 -178.94(16) . . . . ? C11 C12 C13 O3 0.2(2) . . . . ? C7 C12 C13 C5 1.6(3) . . . . ? C11 C12 C13 C5 -179.29(14) . . . . ?