Crystallography Open Database

Information card for entry 2008009

2008008 << 2008009 >> 2008010

Preview

Coordinates	2008009.cif
Original IUCr paper	HTML

Structure parameters

Common name	([9]aneS3)(5-NO2-phen)Pd](PF6)2.MeNO2
Chemical name	[(5-Nitro-1,10-phenanthroline)(1,4,7-trithiacyclononane-S,S',S")palladium(II)] Bis(hexafluorophosphate) Nitromethane Solvate
Formula	C19 H22 F12 N4 O4 P2 Pd S3
Calculated formula	C19 H19 F12 N4 O4 P2 Pd S3
Title of publication	[(5-Nitro-1,10-phenanthroline-<i>N</i>,<i>N</i>')(1,4,7-trithiacyclononane-<i>S</i>,<i>S</i>',<i>S</i>'')palladium(II)] Bis(hexafluorophosphate) Nitromethane Solvate
Authors of publication	Blake, Alexander J.; Champness, Neil R.; Li, Wan-Sheung; Schröder, Martin
Journal of publication	Acta Crystallographica Section C
Year of publication	1998
Journal volume	54
Journal issue	12
Pages of publication	IUC9800071
a	13.541 ± 0.004 Å
b	13.177 ± 0.004 Å
c	17.06 ± 0.004 Å
α	90°
β	98.49 ± 0.02°
γ	90°
Cell volume	3010.7 ± 1.5 Å³
Cell temperature	210 ± 2 K
Ambient diffraction temperature	210 ± 2 K
Number of distinct elements	8
Space group number	14
Hermann-Mauguin space group symbol	P 1 21/c 1
Hall space group symbol	-P 2ybc
Residual factor for all reflections	0.121
Residual factor for significantly intense reflections	0.077
Weighted residual factors for all reflections included in the refinement	0.19
Goodness-of-fit parameter for all reflections included in the refinement	1.212
Diffraction radiation wavelength	0.71073 Å
Diffraction radiation type	MoKα
Has coordinates	Yes
Has disorder	Yes
Has F_obs	No

Version history

Revision	Date	Message	Files
176428 (current)	2016-02-13	Replaced deprecated COD CIF data names with their more modern alternatives. The _cod_cif_authors_sg_Hall and _cod_cif_authors_sg_H-M data items were renamed to _cod_original_sg_symbol_Hall and _cod_cif_authors_sg_H-M respectively.	2008009.cif
134621	2015-04-02	The 'cif_fix_values' script with an option '--fix-only-weighting-scheme' and 'cif_filter' script were run over CIF files which included an incorrect value of the data item '_refine_ls_weighting_scheme'. Read the log for more details. There were more than 18k CIF files with values to modify. Usually these incorrect values include comment with formulas, but values of this data item must be an enumerator. The script creates new data item '_refine_ls_weighting_details' to store these comments with formulas, and writes the enumerator 'calc' as a value of data item '_refine_ls_weighting_scheme'. There exists some exceptions in the script.	2008009.cif
134499	2015-03-28	cif/ (antanas@echidna.ibt.lt) Fixing misspelled '_atom_site_refinement_flags' tag values (case-sensitive).The issued command: codid2file \| while read file; do cif_fix_values --fix-only-enums --treat-as-set "$file" \| cif_filter -h $file \| sponge $file; done In some cases, tag values did not change, but the tags were reorganized by the 'cif_filter' script. 21 files were affected in total.	2008009.cif
91933	2013-12-28	cif/ (saulius@koala.ibt.lt) Adding DOIs that could be assigned unambiguously to the range 2x CIFs.	2008009.cif
32112	2012-02-03	cif/: committing an update of 45+ thous files, with information appended from the originals.	2008009.cif
26848	2011-09-28	cif/2/, hkl/2/, html/ Reorganising CIFs of the range 2* into the "prefix-directory" tree.	2008009.cif
26029	2011-09-17	cif/2/ Reverting changes of revision 25271: ( cd cif/2/; svn merge -r25271:25270 . ) The problem was that the reprocessed files from IUCr, although were more complete, "resurrected" data errors that were corrected in the previous recisions. The additional data that have been extracted during the reprocessing will have to be merged without overwriting the existing values in COD files, except some explicit and controlled cases (such as publication titles and chemical names).	2008009.cif
25271	2011-09-10	cif/2/ Adding reporocessed IUCr CIFs for the years 1980-2010. The CIFs now contain more complete bibliography, substance names, correctly unfolded text fields (using the CIF line unfolding protocol), explicitely set cell angles, and _cod_data_source_block fields.	2008009.cif
5310	2011-01-02	cif/ Running cif_fix_enum with the core CIF dictionary on COD ranges 2, 8 and 9. Range 9 remained unchanged, and in ranges 2 and 8 there were 17309 modified files, most changes were fixes enumerator case.	2008009.cif
966	2010-01-30	cif/ Adding _cod_database_code tags to all COD entries. Adding tag description to the cif_cod.dic dictionary so that COD entries can be validated.	2008009.cif
853	2009-11-16	cif/ Reconstructing spacegroup designators from the symmetry operators were possible. The comands used can be found in the log file reformat-spacegroups-2009.11.14.log committed with the current revision. Only lines that contained spacegroup designators were changed, and all files pass vcif test after the conversion.	2008009.cif
481	2008-11-20	Changing volume number in numerous Acta Cryst. C published CIFs from 'C[0-9]?[0-9]' into '[0-9]?[0-9]'. This makes the COD CIF collection more uniform, and also helps the deposition scripts to spot potential duplicates more accurately. The command for this transformation was: for i in 2/.cif; \ do ( \ if grep -q '_journal_volume C' $i && \ grep -q '_journal_name_full .Acta Cryst' $i; \ then \ echo === $i ===; \ perl -i -pe 's/_journal_volume C/_journal_volume /' $i; \ perl -i -pe \ "s/_journal_name_full ./_journal_name_full 'Acta Crystallographica Section C'/" $i ; \ fi \ ) done	2008009.cif
19	2008-01-26	Changing all end-of-line codes from DOS style to UNIX style in all COD CIF files, for more convenient processing: In the cod/cif/ directory: ff \*.cif \| xargs perl -i -pe 's/\r\n/\n/'	2008009.cif
14	2008-01-14	Appending a header with SVN keywords, COD URL and copying policy to all COD CIF files.	2008009.cif
13	2008-01-13	Setting the svn:keywords property to "Author Date Revision URL Id" for all CIF files in the cod/cif directory.	2008009.cif
1	2007-11-30	Adding all .cif files from the COD, downloaded in a Cod.zip file on 2007.02.07 (and the same Cod.zip is downloadable today, on 2007.11.29)	2008009.cif