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#$Date: 2025-08-20 12:41:31 +0300 (Wed, 20 Aug 2025) $
#$Revision: 301828 $
#$URL: file:///home/coder/svn-repositories/cod/cif/4/03/27/4032702.cif $
#------------------------------------------------------------------------------
#
# This file is available in the Crystallography Open Database (COD),
# http://www.crystallography.net/
#
# All data on this site have been placed in the public domain by the
# contributors.
#
data_4032702
loop_
_publ_author_name
'Mykhailiuk, Pavel K.'
'Kubyshkin, Vladimir'
'Bach, Thorsten'
'Budisa, Nediljko'
_publ_section_title
;
 Peptidyl-Prolyl Model Study: How Does the Electronic Effect Influence the
 Amide Bond Conformation?
;
_journal_issue                   17
_journal_name_full               'The Journal of organic chemistry'
_journal_page_first              8831
_journal_page_last               8841
_journal_paper_doi               10.1021/acs.joc.7b00803
_journal_volume                  82
_journal_year                    2017
_chemical_absolute_configuration rmad
_chemical_formula_sum            'C9 H15 N O3'
_chemical_formula_weight         185.22
_space_group_IT_number           19
_symmetry_cell_setting           orthorhombic
_symmetry_space_group_name_Hall  'P 2ac 2ab'
_symmetry_space_group_name_H-M   'P 21 21 21'
_atom_sites_solution_hydrogens   geom
_atom_sites_solution_primary     direct
_atom_sites_solution_secondary   difmap
_audit_creation_method           'CrysAlisPro 1.171.38.41 (Rigaku OD, 2015)'
_cell_angle_alpha                90.00
_cell_angle_beta                 90.00
_cell_angle_gamma                90.00
_cell_formula_units_Z            4
_cell_length_a                   8.05900(10)
_cell_length_b                   9.22611(12)
_cell_length_c                   13.21005(17)
_cell_measurement_reflns_used    3152
_cell_measurement_temperature    150(2)
_cell_measurement_theta_max      73.0560
_cell_measurement_theta_min      5.4720
_cell_volume                     982.21(2)
_computing_cell_refinement       'CrysAlisPro 1.171.38.41 (Rigaku OD, 2015)'
_computing_data_collection       'CrysAlisPro 1.171.38.41 (Rigaku OD, 2015)'
_computing_data_reduction        'CrysAlisPro 1.171.38.41 (Rigaku OD, 2015)'
_computing_structure_refinement  'SHELXL-97 (Sheldrick, 1997)'
_computing_structure_solution    'SHELXS-97 (Sheldrick, 1990)'
_diffrn_ambient_environment      N~2~
_diffrn_ambient_temperature      150.00(10)
_diffrn_detector                 'CCD plate'
_diffrn_detector_area_resol_mean 10.5435
_diffrn_detector_type            Atlas
_diffrn_measured_fraction_theta_full 0.998
_diffrn_measured_fraction_theta_max 0.999
_diffrn_measurement_device       'four-circle diffractometer'
_diffrn_measurement_device_type  'SuperNova, Single source at offset, Atlas'
_diffrn_measurement_method       'ω scans'
_diffrn_radiation_monochromator  mirror
_diffrn_radiation_probe          x-ray
_diffrn_radiation_type           'Cu K\a'
_diffrn_radiation_wavelength     1.54184
_diffrn_reflns_av_R_equivalents  0.0167
_diffrn_reflns_av_sigmaI/netI    0.0180
_diffrn_reflns_limit_h_max       7
_diffrn_reflns_limit_h_min       -9
_diffrn_reflns_limit_k_max       11
_diffrn_reflns_limit_k_min       -10
_diffrn_reflns_limit_l_max       15
_diffrn_reflns_limit_l_min       -13
_diffrn_reflns_number            3502
_diffrn_reflns_theta_full        67.47
_diffrn_reflns_theta_max         67.47
_diffrn_reflns_theta_min         5.85
_diffrn_source                   'sealed X-ray tube'
_diffrn_source_type              'SuperNova (Cu) X-ray Source'
_exptl_absorpt_coefficient_mu    0.775
_exptl_absorpt_correction_T_max  0.9059
_exptl_absorpt_correction_T_min  0.8541
_exptl_absorpt_correction_type   multi-scan
_exptl_absorpt_process_details
;
CrysAlisPro 1.171.38.41 (Rigaku Oxford Diffraction, 2015)
Empirical absorption correction using spherical harmonics,
 implemented in SCALE3 ABSPACK scaling algorithm.
;
_exptl_crystal_colour            colourless
_exptl_crystal_density_diffrn    1.253
_exptl_crystal_density_method    'not measured'
_exptl_crystal_description       block
_exptl_crystal_F_000             400
_exptl_crystal_size_max          0.21
_exptl_crystal_size_mid          0.19
_exptl_crystal_size_min          0.13
_refine_diff_density_max         0.169
_refine_diff_density_min         -0.142
_refine_diff_density_rms         0.036
_refine_ls_abs_structure_details 'Flack H D (1983), Acta Cryst. A39, 876-881'
_refine_ls_abs_structure_Flack   0.02(18)
_refine_ls_extinction_coef       0.0293(17)
_refine_ls_extinction_expression Fc^*^=kFc[1+0.001xFc²λ³/sin(2θ)]^-1/4^
_refine_ls_extinction_method     SHELXL
_refine_ls_goodness_of_fit_ref   1.076
_refine_ls_hydrogen_treatment    constr
_refine_ls_matrix_type           full
_refine_ls_number_parameters     122
_refine_ls_number_reflns         1729
_refine_ls_number_restraints     0
_refine_ls_restrained_S_all      1.076
_refine_ls_R_factor_all          0.0272
_refine_ls_R_factor_gt           0.0261
_refine_ls_shift/su_max          0.000
_refine_ls_shift/su_mean         0.000
_refine_ls_structure_factor_coef Fsqd
_refine_ls_weighting_details
'calc w=1/[σ²(Fo²)+(0.0419P)²+0.1174P] where P=(Fo²+2Fc²)/3'
_refine_ls_weighting_scheme      calc
_refine_ls_wR_factor_gt          0.0678
_refine_ls_wR_factor_ref         0.0685
_reflns_number_gt                1694
_reflns_number_total             1729
_reflns_threshold_expression     >2sigma(I)
_cod_data_source_file            jo7b00803_si_002.cif
_cod_data_source_block           cu-1707
_cod_original_sg_symbol_H-M      P212121
_cod_database_code               4032702
loop_
_symmetry_equiv_pos_as_xyz
'x, y, z'
'-x+1/2, -y, z+1/2'
'-x, y+1/2, -z+1/2'
'x+1/2, -y+1/2, -z'
loop_
_atom_site_label
_atom_site_type_symbol
_atom_site_fract_x
_atom_site_fract_y
_atom_site_fract_z
_atom_site_U_iso_or_equiv
_atom_site_adp_type
_atom_site_occupancy
_atom_site_symmetry_multiplicity
_atom_site_calc_flag
_atom_site_refinement_flags
N1 N 0.45351(11) 0.46980(11) 0.36305(7) 0.0213(2) Uani 1 1 d .
O1 O 0.01912(10) 0.46102(12) 0.40504(7) 0.0354(3) Uani 1 1 d .
O2 O 0.17348(10) 0.62499(9) 0.32298(6) 0.0254(2) Uani 1 1 d .
O3 O 0.30973(11) 0.35183(11) 0.24312(6) 0.0328(2) Uani 1 1 d .
C1 C 0.31467(13) 0.46520(13) 0.43530(8) 0.0210(3) Uani 1 1 d .
C2 C 0.36922(15) 0.57825(14) 0.51476(9) 0.0271(3) Uani 1 1 d .
H2A H 0.3340 0.6770 0.4949 0.032 Uiso 1 1 calc R
H2B H 0.3227 0.5553 0.5823 0.032 Uiso 1 1 calc R
C3 C 0.55803(15) 0.56473(14) 0.51465(10) 0.0291(3) Uani 1 1 d .
H3A H 0.6107 0.6527 0.5431 0.035 Uiso 1 1 calc R
H3B H 0.5944 0.4792 0.5541 0.035 Uiso 1 1 calc R
C4 C 0.60003(14) 0.54721(15) 0.40293(9) 0.0259(3) Uani 1 1 d .
H4A H 0.6141 0.6425 0.3696 0.031 Uiso 1 1 calc R
H4B H 0.7024 0.4895 0.3937 0.031 Uiso 1 1 calc R
C5 C 0.29370(16) 0.31436(14) 0.48109(11) 0.0316(3) Uani 1 1 d .
H5A H 0.2677 0.2448 0.4273 0.047 Uiso 1 1 calc R
H5B H 0.2031 0.3159 0.5306 0.047 Uiso 1 1 calc R
H5C H 0.3969 0.2855 0.5148 0.047 Uiso 1 1 calc R
C6 C 0.15218(14) 0.51259(13) 0.38562(9) 0.0221(3) Uani 1 1 d .
C7 C 0.02480(17) 0.67360(16) 0.27191(10) 0.0331(3) Uani 1 1 d .
H7A H 0.0520 0.7550 0.2272 0.050 Uiso 1 1 calc R
H7B H -0.0572 0.7048 0.3222 0.050 Uiso 1 1 calc R
H7C H -0.0212 0.5939 0.2317 0.050 Uiso 1 1 calc R
C8 C 0.43732(15) 0.41581(13) 0.26900(10) 0.0259(3) Uani 1 1 d .
C9 C 0.57964(18) 0.43943(19) 0.19717(10) 0.0395(4) Uani 1 1 d .
H9A H 0.5419 0.4232 0.1276 0.059 Uiso 1 1 calc R
H9B H 0.6693 0.3714 0.2132 0.059 Uiso 1 1 calc R
H9C H 0.6204 0.5390 0.2040 0.059 Uiso 1 1 calc R
loop_
_atom_site_aniso_label
_atom_site_aniso_U_11
_atom_site_aniso_U_22
_atom_site_aniso_U_33
_atom_site_aniso_U_23
_atom_site_aniso_U_13
_atom_site_aniso_U_12
N1 0.0142(4) 0.0247(5) 0.0251(5) -0.0022(4) 0.0009(4) -0.0005(4)
O1 0.0161(4) 0.0435(5) 0.0467(6) 0.0088(5) 0.0007(4) -0.0033(4)
O2 0.0202(4) 0.0255(4) 0.0306(4) 0.0036(4) -0.0031(3) 0.0017(4)
O3 0.0284(5) 0.0375(5) 0.0324(5) -0.0113(4) -0.0041(4) -0.0010(4)
C1 0.0168(5) 0.0229(6) 0.0234(5) 0.0006(5) 0.0008(4) 0.0000(5)
C2 0.0247(6) 0.0318(6) 0.0246(5) -0.0054(5) -0.0019(5) 0.0011(5)
C3 0.0250(6) 0.0325(6) 0.0299(6) -0.0032(5) -0.0090(5) -0.0013(5)
C4 0.0159(5) 0.0295(6) 0.0323(6) 0.0014(6) -0.0034(4) -0.0036(5)
C5 0.0267(6) 0.0287(6) 0.0395(7) 0.0098(6) -0.0004(5) -0.0016(5)
C6 0.0179(5) 0.0242(6) 0.0241(5) -0.0025(5) 0.0001(4) 0.0007(5)
C7 0.0281(6) 0.0354(7) 0.0360(7) 0.0016(6) -0.0094(5) 0.0081(5)
C8 0.0243(6) 0.0254(6) 0.0280(6) -0.0025(5) 0.0006(5) 0.0058(5)
C9 0.0333(7) 0.0518(9) 0.0334(7) -0.0055(7) 0.0082(6) 0.0049(7)
loop_
_atom_type_symbol
_atom_type_description
_atom_type_scat_dispersion_real
_atom_type_scat_dispersion_imag
_atom_type_scat_source
C C 0.0181 0.0091 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4'
H H 0.0000 0.0000 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4'
N N 0.0311 0.0180 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4'
O O 0.0492 0.0322 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4'
loop_
_geom_angle_atom_site_label_1
_geom_angle_atom_site_label_2
_geom_angle_atom_site_label_3
_geom_angle
C8 N1 C1 120.99(9)
C8 N1 C4 125.88(10)
C1 N1 C4 112.99(9)
C6 O2 C7 115.00(9)
N1 C1 C5 111.56(10)
N1 C1 C6 111.39(9)
C5 C1 C6 109.63(10)
N1 C1 C2 101.83(9)
C5 C1 C2 112.21(10)
C6 C1 C2 110.04(9)
C3 C2 C1 103.18(10)
C4 C3 C2 103.36(10)
N1 C4 C3 102.66(9)
O1 C6 O2 123.63(11)
O1 C6 C1 124.05(11)
O2 C6 C1 112.17(9)
O3 C8 N1 120.93(11)
O3 C8 C9 121.99(12)
N1 C8 C9 117.07(11)
loop_
_geom_bond_atom_site_label_1
_geom_bond_atom_site_label_2
_geom_bond_distance
N1 C8 1.3449(16)
N1 C1 1.4713(14)
N1 C4 1.4771(14)
O1 C6 1.2009(15)
O2 C6 1.3377(15)
O2 C7 1.4464(15)
O3 C8 1.2340(16)
C1 C5 1.5269(17)
C1 C6 1.5286(15)
C1 C2 1.5436(16)
C2 C3 1.5267(17)
C3 C4 1.5227(18)
C8 C9 1.5044(18)
loop_
_cod_related_entry_id
_cod_related_entry_database
_cod_related_entry_code
1 PubChem 124166677
