#------------------------------------------------------------------------------
#$Date: 2025-08-21 03:19:08 +0300 (Thu, 21 Aug 2025) $
#$Revision: 301842 $
#$URL: file:///home/coder/svn-repositories/cod/cif/4/50/24/4502446.cif $
#------------------------------------------------------------------------------
#
# This file is available in the Crystallography Open Database (COD),
# http://www.crystallography.net/
#
# All data on this site have been placed in the public domain by the
# contributors.
#
data_4502446
loop_
_publ_author_name
'Fucke, Katharina'
'Qureshi, Naseem'
'Yufit, Dmitry S.'
'Howard, Judith A. K.'
'Steed, Jonathan W.'
_publ_section_title
;
 Hydrogen Bonding Is Not Everything: Extensive Polymorphism in a System
 with Conserved Hydrogen Bonded Synthons
;
_journal_issue                   2
_journal_name_full               'Crystal Growth & Design'
_journal_page_first              880
_journal_paper_doi               10.1021/cg901224f
_journal_volume                  10
_journal_year                    2010
_chemical_formula_moiety         'C13 H13 N3 O S'
_chemical_formula_sum            'C13 H13 N3 O S'
_chemical_formula_weight         259.32
_chemical_melting_point          144
_chemical_name_systematic
; 
1-(3-methylsulfanyl-phenyl)-3-pyridin-2-yl-urea (form II)
;
_space_group_IT_number           14
_symmetry_cell_setting           monoclinic
_symmetry_Int_Tables_number      14
_symmetry_space_group_name_Hall  '-P 2yn'
_symmetry_space_group_name_H-M   'P 1 21/n 1'
_atom_sites_solution_hydrogens   difmap
_atom_sites_solution_primary     direct
_atom_sites_solution_secondary   difmap
_audit_creation_method           SHELXL-97
_cell_angle_alpha                90.00
_cell_angle_beta                 93.59(2)
_cell_angle_gamma                90.00
_cell_formula_units_Z            4
_cell_length_a                   5.4862(3)
_cell_length_b                   13.9388(8)
_cell_length_c                   16.1959(9)
_cell_measurement_reflns_used    3390
_cell_measurement_temperature    120(2)
_cell_measurement_theta_max      30.20
_cell_measurement_theta_min      2.50
_cell_volume                     1236.09(12)
_computing_cell_refinement       'SAINT Ver. 6.45  (Bruker-AXS, 2003)'
_computing_data_collection       'SMART Ver. 5.630 (Bruker-AXS, 2003)'
_computing_data_reduction        'SAINT Ver. 6.45'
_computing_molecular_graphics    'SHELXTL Ver. 6.14'
_computing_publication_material  'SHELXTL Ver. 6.14'
_computing_structure_refinement  'SHELXTL Ver. 6.14'
_computing_structure_solution    'SHELXTL Ver. 6.14 (Bruker-AXS, 2003)'
_diffrn_ambient_temperature      120(2)
_diffrn_measured_fraction_theta_full 0.974
_diffrn_measured_fraction_theta_max 0.974
_diffrn_measurement_device_type  'Bruker SMART CCD 6000'
_diffrn_measurement_method       '0.30° ω scans'
_diffrn_radiation_monochromator  graphite
_diffrn_radiation_source         'fine-focus sealed tube'
_diffrn_radiation_type           Mo-K\a
_diffrn_radiation_wavelength     0.71073
_diffrn_reflns_av_R_equivalents  0.0393
_diffrn_reflns_av_sigmaI/netI    0.0488
_diffrn_reflns_limit_h_max       7
_diffrn_reflns_limit_h_min       -7
_diffrn_reflns_limit_k_max       18
_diffrn_reflns_limit_k_min       -12
_diffrn_reflns_limit_l_max       19
_diffrn_reflns_limit_l_min       -22
_diffrn_reflns_number            9188
_diffrn_reflns_theta_full        29.49
_diffrn_reflns_theta_max         29.49
_diffrn_reflns_theta_min         1.93
_diffrn_standards_number         0
_exptl_absorpt_coefficient_mu    0.253
_exptl_absorpt_correction_T_max  0.9559
_exptl_absorpt_correction_T_min  0.9280
_exptl_absorpt_correction_type   multi-scan
_exptl_absorpt_process_details
;
SADABS  (Bruker-AXS, 2003)
;
_exptl_crystal_colour            colorless
_exptl_crystal_density_diffrn    1.393
_exptl_crystal_density_method    'not measured'
_exptl_crystal_description       cube
_exptl_crystal_F_000             544
_exptl_crystal_size_max          0.30
_exptl_crystal_size_mid          0.18
_exptl_crystal_size_min          0.18
_refine_diff_density_max         0.369
_refine_diff_density_min         -0.241
_refine_diff_density_rms         0.059
_refine_ls_extinction_method     none
_refine_ls_goodness_of_fit_ref   1.062
_refine_ls_hydrogen_treatment    refall
_refine_ls_matrix_type           full
_refine_ls_number_parameters     215
_refine_ls_number_reflns         3357
_refine_ls_number_restraints     0
_refine_ls_restrained_S_all      1.062
_refine_ls_R_factor_all          0.0640
_refine_ls_R_factor_gt           0.0437
_refine_ls_shift/su_max          0.000
_refine_ls_shift/su_mean         0.000
_refine_ls_structure_factor_coef Fsqd
_refine_ls_weighting_details
'calc w=1/[σ²(Fo²)+(0.0600P)²+0.0000P] where P=(Fo²+2Fc²)/3'
_refine_ls_weighting_scheme      calc
_refine_ls_wR_factor_gt          0.1072
_refine_ls_wR_factor_ref         0.1153
_reflns_number_gt                2537
_reflns_number_total             3357
_reflns_threshold_expression     I>2σ(I)
_cod_data_source_file            cg901224f_si_001.cif
_cod_data_source_block           s235_L_II
_cod_depositor_comments
;
The following automatic conversions were performed:

'_symmetry_cell_setting' value 'Monoclinic' changed to 'monoclinic'
according to /home/saulius/struct/CIF-dictionaries/cif_core.dic
dictionary named 'cif_core.dic' version 2.4.2 from 2011-04-26.

Automatic conversion script
Id: cif_fix_values 1715 2011-07-08 13:25:40Z adriana 
;
_cod_original_cell_volume        1236.08(12)
_cod_original_sg_symbol_Hall     '-P 2yn      '
_cod_original_sg_symbol_H-M      'P 1 21/n 1  '
_cod_database_code               4502446
loop_
_symmetry_equiv_pos_as_xyz
'x, y, z'
'-x+1/2, y+1/2, -z+1/2'
'-x, -y, -z'
'x-1/2, -y-1/2, z-1/2'
loop_
_atom_site_label
_atom_site_type_symbol
_atom_site_fract_x
_atom_site_fract_y
_atom_site_fract_z
_atom_site_U_iso_or_equiv
_atom_site_adp_type
_atom_site_occupancy
_atom_site_symmetry_multiplicity
_atom_site_calc_flag
S1 S 0.20018(8) 0.62706(3) 0.40054(3) 0.02696(14) Uani 1 1 d
O1 O 0.0829(2) 0.50259(8) 0.10673(7) 0.0239(3) Uani 1 1 d
N1 N 0.4452(3) 0.42760(10) 0.14356(8) 0.0203(3) Uani 1 1 d
N2 N 0.2695(2) 0.41958(9) 0.00938(8) 0.0196(3) Uani 1 1 d
N3 N 0.6267(2) 0.32520(9) 0.01879(8) 0.0202(3) Uani 1 1 d
C1 C -0.0154(3) 0.67008(13) 0.32043(11) 0.0245(4) Uani 1 1 d
C2 C 0.3823(3) 0.54474(11) 0.34795(10) 0.0206(3) Uani 1 1 d
C3 C 0.3263(3) 0.51780(11) 0.26595(10) 0.0202(3) Uani 1 1 d
C4 C 0.4823(3) 0.45520(11) 0.22710(9) 0.0183(3) Uani 1 1 d
C5 C 0.6890(3) 0.41845(11) 0.27139(10) 0.0207(3) Uani 1 1 d
C6 C 0.7384(3) 0.44422(12) 0.35356(10) 0.0231(3) Uani 1 1 d
C7 C 0.5871(3) 0.50747(12) 0.39225(10) 0.0217(3) Uani 1 1 d
C8 C 0.2583(3) 0.45286(11) 0.08934(9) 0.0183(3) Uani 1 1 d
C9 C 0.4369(3) 0.36019(10) -0.02708(9) 0.0175(3) Uani 1 1 d
C10 C 0.3937(3) 0.33991(11) -0.11170(10) 0.0202(3) Uani 1 1 d
C11 C 0.5567(3) 0.28132(12) -0.14854(10) 0.0226(3) Uani 1 1 d
C12 C 0.7544(3) 0.24284(12) -0.10183(11) 0.0253(4) Uani 1 1 d
C13 C 0.7824(3) 0.26724(11) -0.01933(11) 0.0237(3) Uani 1 1 d
H1N H 0.543(4) 0.3955(16) 0.1246(14) 0.047(7) Uiso 1 1 d
H2N H 0.150(4) 0.4429(14) -0.0262(13) 0.038(6) Uiso 1 1 d
H1A H -0.109(4) 0.6134(14) 0.2971(13) 0.038(6) Uiso 1 1 d
H1B H -0.125(4) 0.7129(16) 0.3454(13) 0.047(6) Uiso 1 1 d
H1C H 0.077(4) 0.7086(15) 0.2769(13) 0.046(6) Uiso 1 1 d
H3 H 0.187(3) 0.5424(12) 0.2353(11) 0.024(5) Uiso 1 1 d
H5 H 0.790(3) 0.3806(12) 0.2408(11) 0.021(5) Uiso 1 1 d
H6 H 0.885(3) 0.4213(13) 0.3855(12) 0.031(5) Uiso 1 1 d
H7 H 0.629(3) 0.5303(13) 0.4466(13) 0.031(5) Uiso 1 1 d
H10 H 0.251(3) 0.3689(12) -0.1413(11) 0.023(5) Uiso 1 1 d
H11 H 0.538(3) 0.2691(13) -0.2072(12) 0.033(5) Uiso 1 1 d
H12 H 0.870(3) 0.2050(13) -0.1259(11) 0.027(5) Uiso 1 1 d
H13 H 0.907(4) 0.2403(13) 0.0152(11) 0.029(5) Uiso 1 1 d
loop_
_atom_type_symbol
_atom_type_description
_atom_type_scat_dispersion_real
_atom_type_scat_dispersion_imag
_atom_type_scat_source
C C 0.0033 0.0016 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4'
H H 0.0000 0.0000 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4'
O O 0.0106 0.0060 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4'
N N 0.0061 0.0033 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4'
S S 0.1246 0.1234 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4'
loop_
_geom_angle_atom_site_label_1
_geom_angle_atom_site_label_2
_geom_angle_atom_site_label_3
_geom_angle
_geom_angle_publ_flag
C2 S1 C1 103.49(8) yes
C8 N1 C4 127.57(14) yes
C8 N1 H1N 114.1(18) ?
C4 N1 H1N 118.3(18) ?
C8 N2 C9 131.73(14) yes
C8 N2 H2N 113.7(13) ?
C9 N2 H2N 114.5(13) ?
C9 N3 C13 117.24(14) yes
S1 C1 H1A 107.8(12) ?
S1 C1 H1B 107.7(13) ?
H1A C1 H1B 109.4(17) ?
S1 C1 H1C 109.5(12) ?
H1A C1 H1C 114.2(16) ?
H1B C1 H1C 108.1(17) ?
C3 C2 C7 120.74(15) yes
C3 C2 S1 122.29(13) yes
C7 C2 S1 116.97(12) yes
C2 C3 C4 119.45(15) yes
C2 C3 H3 121.5(11) ?
C4 C3 H3 119.0(11) ?
C3 C4 C5 119.76(15) yes
C3 C4 N1 123.12(14) yes
C5 C4 N1 117.10(14) yes
C6 C5 C4 119.95(15) yes
C6 C5 H5 124.8(11) ?
C4 C5 H5 115.1(11) ?
C7 C6 C5 120.74(15) yes
C7 C6 H6 117.5(11) ?
C5 C6 H6 121.6(11) ?
C6 C7 C2 119.33(15) yes
C6 C7 H7 121.0(12) ?
C2 C7 H7 119.4(12) ?
O1 C8 N1 124.62(14) yes
O1 C8 N2 118.99(14) yes
N1 C8 N2 116.40(13) yes
N3 C9 N2 119.56(14) yes
N3 C9 C10 123.24(14) yes
N2 C9 C10 117.20(14) yes
C11 C10 C9 117.93(15) yes
C11 C10 H10 123.7(10) ?
C9 C10 H10 118.4(10) ?
C10 C11 C12 119.97(16) yes
C10 C11 H11 120.0(12) ?
C12 C11 H11 120.0(11) ?
C13 C12 C11 117.90(15) yes
C13 C12 H12 120.7(12) ?
C11 C12 H12 121.3(12) ?
N3 C13 C12 123.71(15) yes
N3 C13 H13 115.2(11) ?
C12 C13 H13 120.9(11) ?
loop_
_geom_bond_atom_site_label_1
_geom_bond_atom_site_label_2
_geom_bond_distance
_geom_bond_publ_flag
S1 C2 1.7739(16) yes
S1 C1 1.8027(19) yes
O1 C8 1.2325(18) yes
N1 C8 1.354(2) yes
N1 C4 1.409(2) yes
N1 H1N 0.78(2) ?
N2 C8 1.381(2) yes
N2 C9 1.3950(19) yes
N2 H2N 0.91(2) ?
N3 C9 1.333(2) yes
N3 C13 1.353(2) yes
C1 H1A 1.00(2) ?
C1 H1B 0.95(2) ?
C1 H1C 1.04(2) ?
C2 C3 1.396(2) yes
C2 C7 1.395(2) yes
C3 C4 1.399(2) yes
C3 H3 0.948(19) ?
C4 C5 1.400(2) yes
C5 C6 1.389(2) yes
C5 H5 0.929(17) ?
C6 C7 1.387(2) yes
C6 H6 0.98(2) ?
C7 H7 0.95(2) ?
C9 C10 1.405(2) yes
C10 C11 1.375(2) yes
C10 H10 0.980(18) ?
C11 C12 1.391(2) yes
C11 H11 0.964(19) ?
C12 C13 1.378(2) yes
C12 H12 0.929(18) ?
C13 H13 0.936(19) ?
loop_
_geom_hbond_atom_site_label_D
_geom_hbond_atom_site_label_H
_geom_hbond_atom_site_label_A
_geom_hbond_distance_DH
_geom_hbond_distance_HA
_geom_hbond_distance_DA
_geom_hbond_angle_DHA
_geom_hbond_site_symmetry_A
N1 H1N N3 0.78(2) 2.05(2) 2.7139(19) 143(2) .
N2 H2N O1 0.91(2) 1.92(2) 2.8275(18) 175.1(19) 3_565
loop_
_cod_related_entry_id
_cod_related_entry_database
_cod_related_entry_code
1 ChemSpider 24747113
2 PubChem 46891619
