#------------------------------------------------------------------------------
#$Date: 2025-08-21 03:19:08 +0300 (Thu, 21 Aug 2025) $
#$Revision: 301842 $
#$URL: file:///home/coder/svn-repositories/cod/cif/4/50/35/4503589.cif $
#------------------------------------------------------------------------------
#
# This file is available in the Crystallography Open Database (COD),
# http://www.crystallography.net/
#
# All data on this site have been placed in the public domain by the
# contributors.
#
data_4503589
loop_
_publ_author_name
'Cetina, Mario'
'Nagl, Ante'
'Krištafor, Vedran'
'Benci, Krešimir'
'Mintas, Mladen'
_publ_section_title
;
 The Supramolecular Assemblies ofN-Phthalimide Protected (E)- and
 (Z)-4-Amino-2-butenyl 5-Substituted Pyrimidine Derivatives: From Dimers
 to Two-Dimensional and Three-Dimensional Networks
;
_journal_issue                   8
_journal_name_full               'Crystal Growth & Design'
_journal_page_first              2975
_journal_paper_doi               10.1021/cg800090n
_journal_volume                  8
_journal_year                    2008
_chemical_formula_moiety         'C16 H12 F N3 O4'
_chemical_formula_sum            'C16 H12 F N3 O4'
_chemical_formula_weight         329.29
_chemical_melting_point          502(2)
_chemical_name_systematic
;
(E)-1-[4-(N-Phthalimido)-2-butenyl]-5-fluorouracil
;
_space_group_IT_number           2
_symmetry_cell_setting           triclinic
_symmetry_space_group_name_Hall  '-P 1'
_symmetry_space_group_name_H-M   'P -1'
_atom_sites_solution_hydrogens   mixed
_atom_sites_solution_primary     direct
_atom_sites_solution_secondary   difmap
_cell_angle_alpha                63.852(4)
_cell_angle_beta                 68.655(3)
_cell_angle_gamma                63.734(4)
_cell_formula_units_Z            2
_cell_length_a                   9.4250(4)
_cell_length_b                   9.7967(4)
_cell_length_c                   10.3001(3)
_cell_measurement_reflns_used    6749
_cell_measurement_temperature    295(2)
_cell_measurement_theta_max      34.7396
_cell_measurement_theta_min      4.0139
_cell_volume                     748.52(6)
_computing_cell_refinement       'CrysAlisCCD (Oxford, 2007)'
_computing_data_collection       'CrysAlisCCD (Oxford, 2007)'
_computing_data_reduction        'CrysAlisRED (Oxford, 2007)'
_computing_molecular_graphics    'PLATON (Spek, 2003) & MERCURY (Macrae, 2006)'
_computing_publication_material  'PLATON (Spek, 2003) & MERCURY (Macrae, 2006)'
_computing_structure_refinement  'SHELXL-97 (Sheldrick, 1997)'
_computing_structure_solution    'SHELXS-97 (Sheldrick, 1997)'
_diffrn_ambient_temperature      295(2)
_diffrn_detector_area_resol_mean 16.3426
_diffrn_measured_fraction_theta_full 0.995
_diffrn_measured_fraction_theta_max 0.995
_diffrn_measurement_device_type  'Oxford Diffraction Xcalibur2 Diffractometer'
_diffrn_measurement_method       'ω scans'
_diffrn_radiation_monochromator  graphite
_diffrn_radiation_source         'Enhance (Mo) X-ray Source'
_diffrn_radiation_type           MoK\a
_diffrn_radiation_wavelength     0.71073
_diffrn_reflns_av_R_equivalents  0.0187
_diffrn_reflns_av_sigmaI/netI    0.0142
_diffrn_reflns_limit_h_max       12
_diffrn_reflns_limit_h_min       -12
_diffrn_reflns_limit_k_max       12
_diffrn_reflns_limit_k_min       -12
_diffrn_reflns_limit_l_max       11
_diffrn_reflns_limit_l_min       -13
_diffrn_reflns_number            11521
_diffrn_reflns_theta_full        26.99
_diffrn_reflns_theta_max         26.99
_diffrn_reflns_theta_min         4.03
_diffrn_standards_decay_%        negligible
_diffrn_standards_interval_count 50
_diffrn_standards_number         2
_exptl_absorpt_coefficient_mu    0.115
_exptl_absorpt_correction_type   none
_exptl_crystal_colour            colourless
_exptl_crystal_density_diffrn    1.461
_exptl_crystal_density_method    'not measured'
_exptl_crystal_description       prism
_exptl_crystal_F_000             340
_exptl_crystal_size_max          0.64
_exptl_crystal_size_mid          0.52
_exptl_crystal_size_min          0.38
_refine_diff_density_max         0.186
_refine_diff_density_min         -0.198
_refine_diff_density_rms         0.074
_refine_ls_extinction_method     none
_refine_ls_goodness_of_fit_ref   1.022
_refine_ls_hydrogen_treatment    mixed
_refine_ls_matrix_type           full
_refine_ls_number_parameters     221
_refine_ls_number_reflns         3256
_refine_ls_number_restraints     0
_refine_ls_restrained_S_all      1.022
_refine_ls_R_factor_all          0.0535
_refine_ls_R_factor_gt           0.0416
_refine_ls_shift/su_max          0.001
_refine_ls_shift/su_mean         0.000
_refine_ls_structure_factor_coef Fsqd
_refine_ls_weighting_details
'calc w=1/[σ²(Fo²)+(0.1119P)²+0.0000P] where P=(Fo²+2Fc²)/3'
_refine_ls_weighting_scheme      calc
_refine_ls_wR_factor_gt          0.1359
_refine_ls_wR_factor_ref         0.1479
_reflns_number_gt                2524
_reflns_number_total             3256
_reflns_threshold_expression     >2sigma(I)
_cod_data_source_file            cg800090n-file002.cif
_cod_data_source_block           VKD11
_cod_depositor_comments
;
The following automatic conversions were performed:

'_chemical_melting_point' value '500:504' was changed to '502(2)' -
the average value was taken and precision was estimated.

Automatic conversion script
Id: cif_fix_values 1715 2011-07-08 13:25:40Z adriana 

The following automatic conversions were performed:

'_atom_sites_solution_hydrogens' value 'geom&difmap' was changed to
'mixed'.

Automatic conversion script
Id: cif_fix_values 6452 2018-10-05 10:23:21Z andrius 
;
_cod_original_cell_volume        748.52(5)
_cod_original_sg_symbol_H-M      P-1
_cod_database_code               4503589
loop_
_symmetry_equiv_pos_as_xyz
'x, y, z'
'-x, -y, -z'
loop_
_atom_site_label
_atom_site_type_symbol
_atom_site_fract_x
_atom_site_fract_y
_atom_site_fract_z
_atom_site_U_iso_or_equiv
_atom_site_adp_type
_atom_site_occupancy
_atom_site_symmetry_multiplicity
_atom_site_calc_flag
_atom_site_refinement_flags
F F 0.72491(14) 0.22822(14) 0.06865(11) 0.0961(4) Uani 1 1 d .
N1 N 0.36507(13) 0.38166(13) 0.31730(12) 0.0554(3) Uani 1 1 d .
N3 N 0.58516(13) 0.39815(13) 0.35457(12) 0.0544(3) Uani 1 1 d .
H3 H 0.618(2) 0.4253(17) 0.4032(17) 0.066(4) Uiso 1 1 d .
N1' N -0.25963(13) 0.80176(13) 0.15258(11) 0.0568(3) Uani 1 1 d .
O1 O 0.33114(12) 0.48462(13) 0.48960(11) 0.0668(3) Uani 1 1 d .
O2 O 0.84272(13) 0.30042(14) 0.23282(13) 0.0788(3) Uani 1 1 d .
O1' O -0.33513(14) 0.72582(14) 0.01274(12) 0.0777(3) Uani 1 1 d .
O2' O -0.26459(13) 0.89382(13) 0.32580(11) 0.0729(3) Uani 1 1 d .
C2 C 0.42124(15) 0.42553(15) 0.39349(14) 0.0519(3) Uani 1 1 d .
C4 C 0.69886(16) 0.32774(16) 0.25152(15) 0.0575(3) Uani 1 1 d .
C5 C 0.62474(19) 0.29393(18) 0.17416(15) 0.0645(4) Uani 1 1 d .
C6 C 0.46661(19) 0.32066(18) 0.20646(15) 0.0617(4) Uani 1 1 d .
H6 H 0.4243 0.2975 0.1529 0.074 Uiso 1 1 calc R
C7 C 0.19029(16) 0.40684(16) 0.35395(16) 0.0606(4) Uani 1 1 d .
H7A H 0.1478 0.3963 0.4577 0.073 Uiso 1 1 calc R
H7B H 0.1753 0.3240 0.3381 0.073 Uiso 1 1 calc R
C8 C 0.09891(15) 0.56782(15) 0.26293(14) 0.0535(3) Uani 1 1 d .
H8 H 0.1089 0.6578 0.2635 0.064 Uiso 1 1 calc R
C9 C 0.00542(16) 0.59242(16) 0.18195(15) 0.0591(3) Uani 1 1 d .
H9 H -0.0054 0.5032 0.1807 0.071 Uiso 1 1 calc R
C10 C -0.08530(16) 0.75663(18) 0.09108(15) 0.0651(4) Uani 1 1 d .
H10A H -0.0459 0.8353 0.0863 0.078 Uiso 1 1 calc R
H10B H -0.0652 0.7585 -0.0089 0.078 Uiso 1 1 calc R
C2' C -0.36968(16) 0.78400(16) 0.10630(14) 0.0565(3) Uani 1 1 d .
C3' C -0.53206(16) 0.85073(14) 0.19496(14) 0.0540(3) Uani 1 1 d .
C4' C -0.50966(16) 0.90130(15) 0.29008(14) 0.0542(3) Uani 1 1 d .
C5' C -0.33437(17) 0.86842(15) 0.26533(14) 0.0554(3) Uani 1 1 d .
C6' C -0.64001(18) 0.97317(17) 0.38354(17) 0.0655(4) Uani 1 1 d .
H6' H -0.6258 1.0064 0.4483 0.079 Uiso 1 1 calc R
C7' C -0.7929(2) 0.99397(19) 0.37727(19) 0.0767(5) Uani 1 1 d .
H7' H -0.8829 1.0432 0.4384 0.092 Uiso 1 1 calc R
C8' C -0.81497(19) 0.9431(2) 0.2819(2) 0.0774(5) Uani 1 1 d .
H8' H -0.9190 0.9586 0.2800 0.093 Uiso 1 1 calc R
C9' C -0.68340(19) 0.86953(18) 0.18972(17) 0.0677(4) Uani 1 1 d .
H9' H -0.6970 0.8340 0.1263 0.081 Uiso 1 1 calc R
loop_
_atom_type_symbol
_atom_type_description
_atom_type_scat_dispersion_real
_atom_type_scat_dispersion_imag
_atom_type_scat_source
C C 0.0033 0.0016 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4'
H H 0.0000 0.0000 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4'
F F 0.0171 0.0103 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4'
N N 0.0061 0.0033 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4'
O O 0.0106 0.0060 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4'
loop_
_geom_angle_atom_site_label_1
_geom_angle_atom_site_label_2
_geom_angle_atom_site_label_3
_geom_angle
C6 N1 C2 121.21(12)
C6 N1 C7 120.31(11)
C2 N1 C7 118.45(11)
C2 N3 C4 127.56(12)
C2 N3 H3 114.4(11)
C4 N3 H3 118.0(11)
C5' N1' C2' 112.03(11)
C5' N1' C10 123.37(11)
C2' N1' C10 124.60(11)
O1 C2 N1 121.90(12)
O1 C2 N3 122.57(12)
N1 C2 N3 115.53(12)
O2 C4 N3 121.75(13)
O2 C4 C5 126.51(13)
N3 C4 C5 111.74(12)
C6 C5 F 120.81(13)
C6 C5 C4 122.64(13)
F C5 C4 116.52(13)
C5 C6 N1 121.11(13)
C5 C6 H6 119.4
N1 C6 H6 119.4
N1 C7 C8 111.84(10)
N1 C7 H7A 109.2
C8 C7 H7A 109.2
N1 C7 H7B 109.2
C8 C7 H7B 109.2
H7A C7 H7B 107.9
C9 C8 C7 124.64(12)
C9 C8 H8 117.7
C7 C8 H8 117.7
C8 C9 C10 123.39(13)
C8 C9 H9 118.3
C10 C9 H9 118.3
N1' C10 C9 111.89(11)
N1' C10 H10A 109.2
C9 C10 H10A 109.2
N1' C10 H10B 109.2
C9 C10 H10B 109.2
H10A C10 H10B 107.9
O1' C2' N1' 124.97(13)
O1' C2' C3' 129.07(13)
N1' C2' C3' 105.96(10)
C9' C3' C4' 121.82(13)
C9' C3' C2' 130.50(12)
C4' C3' C2' 107.65(12)
C6' C4' C3' 120.81(14)
C6' C4' C5' 130.81(13)
C3' C4' C5' 108.36(12)
O2' C5' N1' 124.78(13)
O2' C5' C4' 129.25(13)
N1' C5' C4' 105.96(11)
C4' C6' C7' 117.50(14)
C4' C6' H6' 121.2
C7' C6' H6' 121.2
C6' C7' C8' 121.57(15)
C6' C7' H7' 119.2
C8' C7' H7' 119.2
C9' C8' C7' 120.51(15)
C9' C8' H8' 119.7
C7' C8' H8' 119.7
C3' C9' C8' 117.79(13)
C3' C9' H9' 121.1
C8' C9' H9' 121.1
loop_
_geom_bond_atom_site_label_1
_geom_bond_atom_site_label_2
_geom_bond_distance
F C5 1.3486(15)
N1 C6 1.3697(17)
N1 C2 1.3718(16)
N1 C7 1.4788(16)
N3 C2 1.3772(16)
N3 C4 1.3834(17)
N3 H3 0.849(15)
N1' C5' 1.3918(16)
N1' C2' 1.3878(17)
N1' C10 1.4637(17)
O1 C2 1.2223(16)
O2 C4 1.2171(17)
O1' C2' 1.2046(15)
O2' C5' 1.2092(16)
C4 C5 1.441(2)
C5 C6 1.331(2)
C6 H6 0.9300
C7 C8 1.4800(18)
C7 H7A 0.9700
C7 H7B 0.9700
C8 C9 1.3039(17)
C8 H8 0.9300
C9 C10 1.4944(19)
C9 H9 0.9300
C10 H10A 0.9700
C10 H10B 0.9700
C2' C3' 1.4923(19)
C3' C9' 1.3734(19)
C3' C4' 1.3858(18)
C4' C6' 1.3794(19)
C4' C5' 1.4808(19)
C6' C7' 1.385(2)
C6' H6' 0.9300
C7' C8' 1.389(2)
C7' H7' 0.9300
C8' C9' 1.383(2)
C8' H8' 0.9300
C9' H9' 0.9300
loop_
_geom_torsion_atom_site_label_1
_geom_torsion_atom_site_label_2
_geom_torsion_atom_site_label_3
_geom_torsion_atom_site_label_4
_geom_torsion
C6 N1 C2 O1 177.77(12)
C7 N1 C2 O1 -0.18(19)
C6 N1 C2 N3 -2.38(18)
C7 N1 C2 N3 179.68(10)
C4 N3 C2 O1 177.77(12)
C4 N3 C2 N1 -2.1(2)
C2 N3 C4 O2 -175.30(12)
C2 N3 C4 C5 4.8(2)
O2 C4 C5 C6 176.68(14)
N3 C4 C5 C6 -3.4(2)
O2 C4 C5 F -1.3(2)
N3 C4 C5 F 178.60(11)
F C5 C6 N1 177.50(12)
C4 C5 C6 N1 -0.4(2)
C2 N1 C6 C5 3.6(2)
C7 N1 C6 C5 -178.52(12)
C6 N1 C7 C8 -87.72(15)
C2 N1 C7 C8 90.24(14)
N1 C7 C8 C9 125.01(14)
C7 C8 C9 C10 -179.97(12)
C5' N1' C10 C9 83.70(16)
C2' N1' C10 C9 -96.42(14)
C8 C9 C10 N1' -109.24(15)
C5' N1' C2' O1' -178.17(13)
C10 N1' C2' O1' 1.9(2)
C5' N1' C2' C3' 1.92(14)
C10 N1' C2' C3' -177.97(11)
O1' C2' C3' C9' -3.0(2)
N1' C2' C3' C9' 176.92(13)
O1' C2' C3' C4' 179.03(14)
N1' C2' C3' C4' -1.07(13)
C9' C3' C4' C6' -0.1(2)
C2' C3' C4' C6' 178.11(11)
C9' C3' C4' C5' -178.30(11)
C2' C3' C4' C5' -0.10(14)
C2' N1' C5' O2' 178.91(13)
C10 N1' C5' O2' -1.2(2)
C2' N1' C5' C4' -1.98(14)
C10 N1' C5' C4' 177.91(11)
C6' C4' C5' O2' 2.3(2)
C3' C4' C5' O2' -179.72(14)
C6' C4' C5' N1' -176.75(13)
C3' C4' C5' N1' 1.22(14)
C3' C4' C6' C7' -0.6(2)
C5' C4' C6' C7' 177.11(13)
C4' C6' C7' C8' 0.7(2)
C6' C7' C8' C9' 0.0(2)
C4' C3' C9' C8' 0.8(2)
C2' C3' C9' C8' -176.96(13)
C7' C8' C9' C3' -0.7(2)
loop_
_cod_related_entry_id
_cod_related_entry_database
_cod_related_entry_code
1 PubChem 16074134
