#------------------------------------------------------------------------------
#$Date: 2019-11-24 00:16:48 +0200 (Sun, 24 Nov 2019) $
#$Revision: 235724 $
#$URL: file:///home/coder/svn-repositories/cod/cif/7/15/72/7157221.cif $
#------------------------------------------------------------------------------
#
# This file is available in the Crystallography Open Database (COD),
# http://www.crystallography.net/
#
# All data on this site have been placed in the public domain by the
# contributors.
#
data_7157221
loop_
_publ_author_name
'Sansook, Supojjanee'
'Ocasio, Cory A.'
'Day, Iain J.'
'Tizzard, Graham J.'
'Coles, Simon J.'
'Fedorov, Oleg'
'Bennett, James M.'
'Elkins, Jonathan M.'
'Spencer, John'
_publ_section_title
;
 Synthesis of kinase inhibitors containing a pentafluorosulfanyl moiety.
;
_journal_issue                   40
_journal_name_full               'Organic & biomolecular chemistry'
_journal_page_first              8655
_journal_page_last               8660
_journal_paper_doi               10.1039/c7ob02289a
_journal_volume                  15
_journal_year                    2017
_chemical_formula_moiety         'C13 H9 F5 N2 O S'
_chemical_formula_sum            'C13 H9 F5 N2 O S'
_chemical_formula_weight         336.28
_space_group_crystal_system      monoclinic
_space_group_IT_number           14
_space_group_name_Hall           '-P 2ybc'
_space_group_name_H-M_alt        'P 1 21/c 1'
_atom_sites_solution_hydrogens   mixed
_atom_sites_solution_primary     iterative
_audit_block_doi                 10.5517/ccdc.csd.cc1phmh9
_audit_creation_date             2015-03-19
_audit_creation_method
;
Olex2 1.2
(compiled 2015.01.26 svn.r3150 for OlexSys, GUI svn.r4998)
;
_audit_update_record
;
2017-07-24 deposited with the CCDC.
2017-11-29 downloaded from the CCDC.
;
_cell_angle_alpha                90
_cell_angle_beta                 119.308(12)
_cell_angle_gamma                90
_cell_formula_units_Z            4
_cell_length_a                   16.2237(16)
_cell_length_b                   5.6641(3)
_cell_length_c                   16.3505(13)
_cell_measurement_reflns_used    5125
_cell_measurement_temperature    100(2)
_cell_measurement_theta_max      27.5180
_cell_measurement_theta_min      2.4770
_cell_volume                     1310.2(2)
_computing_cell_refinement
'CrysAlisPro, Agilent Technologies, Version 1.171.37.35 (release 13-08-2014 CrysAlis171 .NET) (compiled Aug 13 2014,18:06:01)'
_computing_data_collection
'CrystalClear-SM Expert 3.1 b27 (Rigaku, 2013)'
_computing_data_reduction
'CrysAlisPro, Agilent Technologies, Version 1.171.37.35 (release 13-08-2014 CrysAlis171 .NET) (compiled Aug 13 2014,18:06:01)'
_computing_molecular_graphics    'Olex2 (Dolomanov et al., 2009)'
_computing_publication_material  'Olex2 (Dolomanov et al., 2009)'
_computing_structure_refinement  'ShelXL (Sheldrick, 2008)'
_computing_structure_solution
;
Superflip (Palatinus & Chapuis, 2007;Palatinus & van der Lee, 2008;
Palatinus et al., 2012)
;
_diffrn_ambient_temperature      100(2)
_diffrn_detector                 'CCD area detector'
_diffrn_detector_area_resol_mean 28.5714
_diffrn_detector_type            'Rigaku HG Saturn724+ (2x2 bin mode)'
_diffrn_measured_fraction_theta_full 1.000
_diffrn_measured_fraction_theta_max 0.999
_diffrn_measurement_details
;
#__ type_ start__ end____ width___ exp.time_
  1 omega -106.00   74.00   1.0000   80.0000
omega____ theta____ kappa____ phi______ frames
    -      -16.0000    8.0000  -50.0000 180

#__ type_ start__ end____ width___ exp.time_
  2 omega -106.00   23.00   1.0000   80.0000
omega____ theta____ kappa____ phi______ frames
    -      -16.0000  -72.0000   49.0000 129

#__ type_ start__ end____ width___ exp.time_
  3 omega  -72.00   23.00   1.0000   80.0000
omega____ theta____ kappa____ phi______ frames
    -      -16.0000  -72.0000 -148.0000 95

#__ type_ start__ end____ width___ exp.time_
  4 omega  -22.00   26.00   1.0000   80.0000
omega____ theta____ kappa____ phi______ frames
    -      -16.0000   -8.0000 -148.0000 48

#__ type_ start__ end____ width___ exp.time_
  5 omega  -32.00  -17.00   1.0000   80.0000
omega____ theta____ kappa____ phi______ frames
    -      -16.0000   72.0000  -17.0000 15

#__ type_ start__ end____ width___ exp.time_
  6 omega  -62.00  -47.00   1.0000   80.0000
omega____ theta____ kappa____ phi______ frames
    -      -16.0000  -24.0000  114.0000 15

#__ type_ start__ end____ width___ exp.time_
  7 omega  -69.00    2.00   1.0000   80.0000
omega____ theta____ kappa____ phi______ frames
    -      -16.0000   -8.0000 -115.0000 71
;
_diffrn_measurement_device       'four-circle κ diffractometer'
_diffrn_measurement_device_type  'Rigaku AFC12 (Right)'
_diffrn_measurement_method       'profile data from ω-scans'
_diffrn_measurement_specimen_support 'MiTeGen MicroMesh'
_diffrn_orient_matrix_UB_11      0.0482377000
_diffrn_orient_matrix_UB_12      0.0341856000
_diffrn_orient_matrix_UB_13      0.0236440000
_diffrn_orient_matrix_UB_21      0.0025652000
_diffrn_orient_matrix_UB_22      -0.0203430000
_diffrn_orient_matrix_UB_23      -0.0414928000
_diffrn_orient_matrix_UB_31      -0.0134136000
_diffrn_orient_matrix_UB_32      0.1187710000
_diffrn_orient_matrix_UB_33      -0.0139079000
_diffrn_radiation_collimation    0.3
_diffrn_radiation_monochromator  'Confocal mirrors, HF Varimax'
_diffrn_radiation_probe          x-ray
_diffrn_radiation_type           MoK\a
_diffrn_radiation_wavelength     0.71075
_diffrn_reflns_av_R_equivalents  0.0900
_diffrn_reflns_av_unetI/netI     0.0791
_diffrn_reflns_Laue_measured_fraction_full 1.000
_diffrn_reflns_Laue_measured_fraction_max 0.999
_diffrn_reflns_limit_h_max       21
_diffrn_reflns_limit_h_min       -21
_diffrn_reflns_limit_k_max       7
_diffrn_reflns_limit_k_min       -7
_diffrn_reflns_limit_l_max       21
_diffrn_reflns_limit_l_min       -19
_diffrn_reflns_number            16214
_diffrn_reflns_point_group_measured_fraction_full 1.000
_diffrn_reflns_point_group_measured_fraction_max 0.999
_diffrn_reflns_theta_full        25.242
_diffrn_reflns_theta_max         27.560
_diffrn_reflns_theta_min         2.492
_diffrn_source                   'Rotating Anode'
_diffrn_source_current           55.0
_diffrn_source_power             2.475
_diffrn_source_target            Mo
_diffrn_source_type              'Rotating Anode'
_diffrn_source_voltage           45.0
_exptl_absorpt_coefficient_mu    0.310
_exptl_absorpt_correction_T_max  1.00000
_exptl_absorpt_correction_T_min  0.71781
_exptl_absorpt_correction_type   multi-scan
_exptl_absorpt_process_details
'CrysAlisPro, Agilent Technologies, Version 1.171.37.35 (release 13-08-2014 CrysAlis171 .NET) (compiled Aug 13 2014,18:06:01) Empirical absorption correction using spherical harmonics, implemented in SCALE3 ABSPACK scaling algorithm. Empirical absorption correction using spherical harmonics, implemented in SCALE3 ABSPACK scaling algorithm.'
_exptl_crystal_colour            yellow
_exptl_crystal_colour_primary    yellow
_exptl_crystal_density_diffrn    1.705
_exptl_crystal_description       plate
_exptl_crystal_F_000             680
_exptl_crystal_size_max          0.05
_exptl_crystal_size_mid          0.04
_exptl_crystal_size_min          0.01
_refine_diff_density_max         0.363
_refine_diff_density_min         -0.361
_refine_diff_density_rms         0.070
_refine_ls_extinction_method     none
_refine_ls_goodness_of_fit_ref   1.024
_refine_ls_hydrogen_treatment    mixed
_refine_ls_matrix_type           full
_refine_ls_number_parameters     205
_refine_ls_number_reflns         3034
_refine_ls_number_restraints     2
_refine_ls_restrained_S_all      1.024
_refine_ls_R_factor_all          0.1168
_refine_ls_R_factor_gt           0.0565
_refine_ls_shift/su_max          0.000
_refine_ls_shift/su_mean         0.000
_refine_ls_structure_factor_coef Fsqd
_refine_ls_weighting_details
'w=1/[σ²(Fo²)+(0.0450P)²+0.3689P] where P=(Fo²+2Fc²)/3'
_refine_ls_weighting_scheme      calc
_refine_ls_wR_factor_gt          0.1006
_refine_ls_wR_factor_ref         0.1186
_reflns_Friedel_coverage         0.000
_reflns_number_gt                1838
_reflns_number_total             3034
_reflns_threshold_expression     'I > 2σ(I)'
_cod_data_source_file            c7ob02289a2.cif
_cod_data_source_block           163
_cod_database_code               7157221
_chemical_oxdiff_formula         'C13 H9 N2 O1 F5 S1'
_shelx_space_group_comment
;
The symmetry employed for this shelxl refinement is uniquely defined
by the following loop, which should always be used as a source of
symmetry information in preference to the above space-group names.
They are only intended as comments.
;
_reflns_odcompleteness_completeness 99.79
_reflns_odcompleteness_iscentric 1
_reflns_odcompleteness_theta     27.50
_olex2_refinement_description
;
1. Fixed Uiso
 At 1.2 times of:
  All C(H) groups, All N(H) groups
2. Restrained distances
 N2-H2 = N1-H1
 0.88 with sigma of 0.002
3.a Aromatic/amide H refined with riding coordinates:
 C4(H4), C5(H5), C7(H7), C9(H9), C11(H11), C12(H12), C13(H13)
;
_shelx_shelxl_version_number     2014/7
_olex2_date_sample_data_collection 2015-03-17
_olex2_date_sample_submission    2015-03-09
_olex2_diffrn_ambient_temperature_device 'Oxford Cryosystems'
_olex2_exptl_crystal_mounting_method
'The crystal was mounted on a MITIGEN holder oil'
_olex2_submission_original_sample_id Exp.109
_olex2_submission_special_instructions 'No special instructions were received'
loop_
_space_group_symop_operation_xyz
'x, y, z'
'-x, y+1/2, -z+1/2'
'-x, -y, -z'
'x, -y-1/2, z-1/2'
loop_
_atom_site_label
_atom_site_type_symbol
_atom_site_fract_x
_atom_site_fract_y
_atom_site_fract_z
_atom_site_U_iso_or_equiv
_atom_site_adp_type
_atom_site_occupancy
_atom_site_site_symmetry_order
_atom_site_calc_flag
_atom_site_refinement_flags_posn
S1 S 0.08988(6) 0.94015(13) 0.19798(5) 0.0283(2) Uani 1 1 d .
F1 F -0.02221(12) 0.9392(3) 0.14960(11) 0.0366(5) Uani 1 1 d .
F2 F 0.08765(14) 0.6724(3) 0.22169(14) 0.0507(6) Uani 1 1 d .
F3 F 0.09196(13) 1.0141(3) 0.29162(11) 0.0406(5) Uani 1 1 d .
F4 F 0.08230(13) 1.2084(3) 0.16884(11) 0.0372(5) Uani 1 1 d .
F5 F 0.07802(13) 0.8682(3) 0.09893(11) 0.0455(5) Uani 1 1 d .
O1 O 0.59084(15) 1.3441(3) 0.48478(13) 0.0281(5) Uani 1 1 d .
N1 N 0.43008(18) 1.2873(4) 0.41030(15) 0.0244(6) Uani 1 1 d D
H1 H 0.416(2) 1.407(3) 0.4357(17) 0.029 Uiso 1 1 d DR
N2 N 0.73075(19) 1.1002(4) 0.47890(16) 0.0271(6) Uani 1 1 d D
H2 H 0.7011(18) 1.217(3) 0.4890(19) 0.033 Uiso 1 1 d DR
C1 C 0.5196(2) 1.2272(5) 0.43139(18) 0.0253(7) Uani 1 1 d .
C2 C 0.5118(2) 1.0043(5) 0.38040(17) 0.0231(7) Uani 1 1 d .
C3 C 0.4118(2) 0.9475(5) 0.32980(17) 0.0225(7) Uani 1 1 d .
C4 C 0.3597(2) 0.7644(5) 0.27082(18) 0.0257(7) Uani 1 1 d .
H4 H 0.3907 0.6416 0.2567 0.031 Uiso 1 1 calc R
C5 C 0.2621(2) 0.7611(5) 0.23239(18) 0.0265(7) Uani 1 1 d .
H5 H 0.2264 0.6349 0.1925 0.032 Uiso 1 1 calc R
C6 C 0.2167(2) 0.9422(5) 0.25220(17) 0.0228(7) Uani 1 1 d .
C7 C 0.2670(2) 1.1276(5) 0.31202(18) 0.0244(7) Uani 1 1 d .
H7 H 0.2359 1.2501 0.3262 0.029 Uiso 1 1 calc R
C8 C 0.3631(2) 1.1249(5) 0.34940(18) 0.0235(7) Uani 1 1 d .
C9 C 0.5838(2) 0.8727(5) 0.38280(18) 0.0250(7) Uani 1 1 d .
H9 H 0.5629 0.7305 0.3477 0.030 Uiso 1 1 calc R
C10 C 0.6821(2) 0.9045(5) 0.42646(18) 0.0267(7) Uani 1 1 d .
C11 C 0.7496(2) 0.7588(5) 0.42301(19) 0.0301(7) Uani 1 1 d .
H11 H 0.7376 0.6111 0.3917 0.036 Uiso 1 1 calc R
C12 C 0.8371(2) 0.8665(5) 0.47313(19) 0.0325(8) Uani 1 1 d .
H12 H 0.8959 0.8069 0.4827 0.039 Uiso 1 1 calc R
C13 C 0.8224(2) 1.0771(6) 0.50645(18) 0.0318(8) Uani 1 1 d .
H13 H 0.8701 1.1883 0.5433 0.038 Uiso 1 1 calc R
loop_
_atom_type_symbol
_atom_type_description
_atom_type_scat_dispersion_real
_atom_type_scat_dispersion_imag
_atom_type_scat_source
C C 0.0033 0.0016 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4'
H H 0.0000 0.0000 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4'
F F 0.0171 0.0103 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4'
N N 0.0061 0.0033 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4'
O O 0.0106 0.0060 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4'
S S 0.1246 0.1234 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4'
loop_
_citation_id
_citation_doi
_citation_year
1 10.1039/C7OB02289A 2017
loop_
_geom_angle_atom_site_label_1
_geom_angle_atom_site_label_2
_geom_angle_atom_site_label_3
_geom_angle
F1 S1 C6 179.69(12)
F2 S1 F1 87.73(10)
F2 S1 F3 90.51(10)
F2 S1 F4 174.94(12)
F2 S1 F5 89.89(11)
F2 S1 C6 92.50(12)
F3 S1 F1 87.68(9)
F3 S1 F4 89.94(10)
F3 S1 F5 174.98(11)
F3 S1 C6 92.53(11)
F4 S1 F1 87.25(10)
F4 S1 F5 89.22(10)
F4 S1 C6 92.52(11)
F5 S1 F1 87.34(10)
F5 S1 C6 92.45(11)
C1 N1 H1 124.1(19)
C1 N1 C8 112.1(2)
C8 N1 H1 123.6(19)
C10 N2 H2 121.3(19)
C13 N2 H2 129.2(19)
C13 N2 C10 109.5(3)
O1 C1 N1 123.7(3)
O1 C1 C2 129.8(3)
N1 C1 C2 106.5(3)
C3 C2 C1 105.8(2)
C9 C2 C1 127.6(3)
C9 C2 C3 126.5(3)
C4 C3 C2 133.9(3)
C4 C3 C8 118.2(3)
C8 C3 C2 107.9(2)
C3 C4 H4 120.1
C3 C4 C5 119.8(3)
C5 C4 H4 120.1
C4 C5 H5 119.9
C4 C5 C6 120.1(3)
C6 C5 H5 119.9
C5 C6 S1 119.3(2)
C5 C6 C7 121.6(3)
C7 C6 S1 119.1(2)
C6 C7 H7 121.6
C8 C7 C6 116.9(3)
C8 C7 H7 121.6
N1 C8 C3 107.7(3)
C7 C8 N1 128.9(3)
C7 C8 C3 123.4(3)
C2 C9 H9 113.4
C2 C9 C10 133.2(3)
C10 C9 H9 113.4
N2 C10 C9 125.3(3)
N2 C10 C11 106.1(3)
C11 C10 C9 128.5(3)
C10 C11 H11 125.9
C12 C11 C10 108.3(3)
C12 C11 H11 125.9
C11 C12 H12 126.6
C13 C12 C11 106.8(3)
C13 C12 H12 126.6
N2 C13 C12 109.4(3)
N2 C13 H13 125.3
C12 C13 H13 125.3
loop_
_geom_bond_atom_site_label_1
_geom_bond_atom_site_label_2
_geom_bond_distance
S1 F1 1.5889(19)
S1 F2 1.5703(19)
S1 F3 1.5717(16)
S1 F4 1.5789(17)
S1 F5 1.5877(17)
S1 C6 1.798(3)
O1 C1 1.245(3)
N1 H1 0.880(2)
N1 C1 1.361(4)
N1 C8 1.400(3)
N2 H2 0.880(2)
N2 C10 1.387(4)
N2 C13 1.332(4)
C1 C2 1.484(4)
C2 C3 1.451(4)
C2 C9 1.369(4)
C3 C4 1.386(4)
C3 C8 1.409(4)
C4 H4 0.9500
C4 C5 1.389(4)
C5 H5 0.9500
C5 C6 1.391(4)
C6 C7 1.394(4)
C7 H7 0.9500
C7 C8 1.369(4)
C9 H9 0.9500
C9 C10 1.404(4)
C10 C11 1.394(4)
C11 H11 0.9500
C11 C12 1.386(4)
C12 H12 0.9500
C12 C13 1.380(4)
C13 H13 0.9500
loop_
_geom_hbond_atom_site_label_D
_geom_hbond_atom_site_label_H
_geom_hbond_atom_site_label_A
_geom_hbond_distance_DH
_geom_hbond_distance_HA
_geom_hbond_distance_DA
_geom_hbond_angle_DHA
_geom_hbond_site_symmetry_A
N1 H1 O1 0.880(2) 1.959(7) 2.826(3) 168(3) 3_686
N2 H2 O1 0.880(2) 1.898(14) 2.699(3) 150(3) .
loop_
_geom_torsion_atom_site_label_1
_geom_torsion_atom_site_label_2
_geom_torsion_atom_site_label_3
_geom_torsion_atom_site_label_4
_geom_torsion
S1 C6 C7 C8 -178.13(19)
F2 S1 C6 C5 46.7(2)
F2 S1 C6 C7 -134.3(2)
F3 S1 C6 C5 137.4(2)
F3 S1 C6 C7 -43.6(2)
F4 S1 C6 C5 -132.6(2)
F4 S1 C6 C7 46.4(2)
F5 S1 C6 C5 -43.3(2)
F5 S1 C6 C7 135.7(2)
O1 C1 C2 C3 179.3(3)
O1 C1 C2 C9 1.6(5)
N1 C1 C2 C3 0.2(3)
N1 C1 C2 C9 -177.5(2)
N2 C10 C11 C12 0.2(3)
C1 N1 C8 C3 0.2(3)
C1 N1 C8 C7 -179.1(3)
C1 C2 C3 C4 -179.6(3)
C1 C2 C3 C8 0.0(3)
C1 C2 C9 C10 -3.9(5)
C2 C3 C4 C5 -179.9(3)
C2 C3 C8 N1 -0.1(3)
C2 C3 C8 C7 179.2(2)
C2 C9 C10 N2 -2.5(5)
C2 C9 C10 C11 -178.9(3)
C3 C2 C9 C10 178.9(3)
C3 C4 C5 C6 0.7(4)
C4 C3 C8 N1 179.6(2)
C4 C3 C8 C7 -1.1(4)
C4 C5 C6 S1 177.6(2)
C4 C5 C6 C7 -1.4(4)
C5 C6 C7 C8 0.9(4)
C6 C7 C8 N1 179.6(2)
C6 C7 C8 C3 0.4(4)
C8 N1 C1 O1 -179.4(2)
C8 N1 C1 C2 -0.3(3)
C8 C3 C4 C5 0.5(4)
C9 C2 C3 C4 -1.9(5)
C9 C2 C3 C8 177.7(3)
C9 C10 C11 C12 177.2(3)
C10 N2 C13 C12 0.1(3)
C10 C11 C12 C13 -0.2(3)
C11 C12 C13 N2 0.1(3)
C13 N2 C10 C9 -177.3(2)
C13 N2 C10 C11 -0.2(3)
