#------------------------------------------------------------------------------ #$Date: 2014-07-11 17:35:18 +0300 (Fri, 11 Jul 2014) $ #$Revision: 120071 $ #$URL: file:///home/coder/svn-repositories/cod/cif/1/50/60/1506007.cif $ #------------------------------------------------------------------------------ # # This file is available in the Crystallography Open Database (COD), # http://www.crystallography.net/ # # All data on this site have been placed in the public domain by the # contributors. # data_1506007 loop_ _publ_author_name 'Korendovych, Ivan V.' 'Cho, Mimi' 'Butler, Phillip L.' 'Staples, Richard J.' 'Rybak-Akimova, Elena V' _publ_section_title ; Anion binding to monotopic and ditopic macrocyclic amides. ; _journal_issue 15 _journal_name_full 'Organic letters' _journal_page_first 3171 _journal_page_last 3174 _journal_volume 8 _journal_year 2006 _chemical_formula_sum 'C14 H22 N4 O3' _chemical_formula_weight 294.36 _chemical_name_systematic ; ? ; _space_group_IT_number 61 _symmetry_cell_setting orthorhombic _symmetry_space_group_name_Hall '-P 2bc 2ac' _symmetry_space_group_name_H-M 'P c a b' _atom_sites_solution_hydrogens geom _atom_sites_solution_primary direct _atom_sites_solution_secondary difmap _audit_creation_method SHELXL-97 _cell_angle_alpha 90.00 _cell_angle_beta 90.00 _cell_angle_gamma 90.00 _cell_formula_units_Z 8 _cell_length_a 7.046(4) _cell_length_b 15.999(10) _cell_length_c 26.916(16) _cell_measurement_temperature 213(2) _cell_volume 3034(3) _computing_cell_refinement 'SMART (BRUKER, V5.054, 1998)' _computing_data_collection 'ASTRO (BRUKER, V5.007, 1997)' _computing_data_reduction 'SAINT (BRUKER, V6.01, 1999)' _computing_molecular_graphics 'SHELXTL (BRUKER, 1998, V5.1)' _computing_publication_material 'XCIF (Sheldrick and BRUKER, 1997, V5.1)' _computing_structure_refinement 'SHELXL-97 (Sheldrick, 1997)' _computing_structure_solution 'SHELXS-97 (Sheldrick, 1990)' _diffrn_ambient_temperature 213(2) _diffrn_measured_fraction_theta_full 1.000 _diffrn_measured_fraction_theta_max 1.000 _diffrn_measurement_device_type 'CCD area detector' _diffrn_measurement_method 'phi and omega scans' _diffrn_radiation_monochromator graphite _diffrn_radiation_source 'fine-focus sealed tube' _diffrn_radiation_type MoK\a _diffrn_radiation_wavelength 0.71073 _diffrn_reflns_av_R_equivalents 0.0471 _diffrn_reflns_av_sigmaI/netI 0.0271 _diffrn_reflns_limit_h_max 7 _diffrn_reflns_limit_h_min -6 _diffrn_reflns_limit_k_max 11 _diffrn_reflns_limit_k_min -17 _diffrn_reflns_limit_l_max 25 _diffrn_reflns_limit_l_min -28 _diffrn_reflns_number 9248 _diffrn_reflns_theta_full 22.49 _diffrn_reflns_theta_max 22.49 _diffrn_reflns_theta_min 1.51 _exptl_absorpt_coefficient_mu 0.092 _exptl_absorpt_correction_type none _exptl_crystal_colour colorless _exptl_crystal_density_diffrn 1.289 _exptl_crystal_density_method 'not measured' _exptl_crystal_description needle _exptl_crystal_F_000 1264 _exptl_crystal_size_max 0.25 _exptl_crystal_size_mid 0.08 _exptl_crystal_size_min 0.06 _refine_diff_density_max 0.353 _refine_diff_density_min -0.265 _refine_diff_density_rms 0.082 _refine_ls_extinction_coef 0.0017(6) _refine_ls_extinction_expression Fc^*^=kFc[1+0.001xFc^2^\l^3^/sin(2\q)]^-1/4^ _refine_ls_extinction_method SHELXL _refine_ls_goodness_of_fit_ref 1.163 _refine_ls_hydrogen_treatment mixed _refine_ls_matrix_type full _refine_ls_number_parameters 193 _refine_ls_number_reflns 1986 _refine_ls_number_restraints 0 _refine_ls_restrained_S_all 1.163 _refine_ls_R_factor_all 0.1536 _refine_ls_R_factor_gt 0.1479 _refine_ls_shift/su_max 0.062 _refine_ls_shift/su_mean 0.013 _refine_ls_structure_factor_coef Fsqd _refine_ls_weighting_details 'calc w=1/[\s^2^(Fo^2^)+(0.0845P)^2^+21.4658P] where P=(Fo^2^+2Fc^2^)/3' _refine_ls_weighting_scheme calc _refine_ls_wR_factor_gt 0.3331 _refine_ls_wR_factor_ref 0.3383 _reflns_number_gt 1837 _reflns_number_total 1986 _reflns_threshold_expression >2sigma(I) _[local]_cod_data_source_file ol060786rsi20060331_091614.cif _[local]_cod_data_source_block I _[local]_cod_cif_authors_sg_H-M Pcab _cod_depositor_comments ; The following automatic conversions were performed: '_symmetry_cell_setting' value 'Orthorhombic' changed to 'orthorhombic' according to /home/saulius/struct/CIF-dictionaries/cif_core.dic dictionary named 'cif_core.dic' version 2.4.1 from 2010-06-29. Automatic conversion script Id: cif_fix_values 1715 2011-07-08 13:25:40Z adriana ; _cod_database_code 1506007 loop_ _symmetry_equiv_pos_as_xyz 'x, y, z' '-x, -y+1/2, z+1/2' 'x+1/2, -y, -z+1/2' '-x+1/2, y+1/2, -z' '-x, -y, -z' 'x, y-1/2, -z-1/2' '-x-1/2, y, z-1/2' 'x-1/2, -y-1/2, z' loop_ _atom_site_label _atom_site_type_symbol _atom_site_fract_x _atom_site_fract_y _atom_site_fract_z _atom_site_U_iso_or_equiv _atom_site_adp_type _atom_site_occupancy _atom_site_symmetry_multiplicity _atom_site_calc_flag _atom_site_refinement_flags O1 O 0.1673(8) 0.8712(4) 0.7071(2) 0.0668(18) Uani 1 1 d . O2 O 0.3587(11) 0.6274(6) 0.4966(2) 0.120(4) Uani 1 1 d . N1 N 0.2702(8) 0.7343(5) 0.6078(2) 0.0492(18) Uani 1 1 d . N2 N 0.1801(8) 0.7293(4) 0.7008(2) 0.0438(16) Uani 1 1 d . H2A H 0.1987 0.6882 0.6803 0.053 Uiso 1 1 calc R N3 N 0.3059(9) 0.5833(5) 0.5755(3) 0.067(2) Uani 1 1 d . H3A H 0.2869 0.6004 0.6057 0.080 Uiso 1 1 calc R N4 N 0.2625(9) 0.5482(4) 0.6844(3) 0.060(2) Uani 1 1 d . H4A H 0.3346 0.5881 0.6731 0.072 Uiso 1 1 calc R C1 C 0.2542(10) 0.8091(5) 0.6299(3) 0.0427(19) Uani 1 1 d . C2 C 0.2863(11) 0.8817(6) 0.6027(4) 0.066(3) Uani 1 1 d . H2 H 0.2784 0.9335 0.6190 0.079 Uiso 1 1 calc R C3 C 0.3282(15) 0.8808(8) 0.5539(5) 0.090(4) Uani 1 1 d . H3 H 0.3445 0.9302 0.5355 0.107 Uiso 1 1 calc R C4 C 0.3459(12) 0.8020(9) 0.5323(4) 0.082(4) Uani 1 1 d . H4 H 0.3790 0.7972 0.4986 0.098 Uiso 1 1 calc R C5 C 0.3146(10) 0.7299(7) 0.5606(3) 0.060(3) Uani 1 1 d . C6 C 0.1984(10) 0.8063(5) 0.6825(3) 0.049(2) Uani 1 1 d . C7 C 0.1326(11) 0.7075(6) 0.7512(3) 0.060(2) Uani 1 1 d . H7A H -0.0057 0.7057 0.7549 0.072 Uiso 1 1 calc R H7B H 0.1822 0.7501 0.7739 0.072 Uiso 1 1 calc R C8 C 0.2157(12) 0.6238(6) 0.7642(3) 0.065(3) Uani 1 1 d . H8A H 0.1807 0.6104 0.7985 0.078 Uiso 1 1 calc R H8B H 0.3543 0.6282 0.7629 0.078 Uiso 1 1 calc R C9 C 0.1541(12) 0.5502(6) 0.7306(3) 0.065(3) Uani 1 1 d . H9A H 0.1725 0.4975 0.7485 0.078 Uiso 1 1 calc R H9B H 0.0187 0.5556 0.7229 0.078 Uiso 1 1 calc R C10 C 0.2289(15) 0.4670(6) 0.6601(5) 0.088(4) Uani 1 1 d . H10A H 0.0977 0.4652 0.6481 0.106 Uiso 1 1 calc R H10B H 0.2439 0.4224 0.6848 0.106 Uiso 1 1 calc R C11 C 0.3627(16) 0.4504(7) 0.6168(5) 0.104(4) Uani 1 1 d . H11A H 0.3669 0.3901 0.6107 0.125 Uiso 1 1 calc R H11B H 0.4907 0.4682 0.6263 0.125 Uiso 1 1 calc R C12 C 0.3081(15) 0.4948(7) 0.5682(4) 0.090(4) Uani 1 1 d . H12A H 0.3997 0.4805 0.5422 0.108 Uiso 1 1 calc R H12B H 0.1823 0.4759 0.5574 0.108 Uiso 1 1 calc R C13 C 0.3298(12) 0.6433(8) 0.5409(3) 0.072(3) Uani 1 1 d . O1S O 0.1482(16) 0.6098(7) 0.4139(4) 0.143(4) Uani 1 1 d . H1S H 0.2120 0.6116 0.4398 0.215 Uiso 1 1 calc R C1S C 0.1219(18) 0.6895(8) 0.3961(4) 0.101(4) Uani 1 1 d . H1S1 H 0.0389 0.7200 0.4184 0.151 Uiso 1 1 calc R H1S2 H 0.0649 0.6869 0.3634 0.151 Uiso 1 1 calc R H2S3 H 0.2434 0.7177 0.3941 0.151 Uiso 1 1 calc R loop_ _atom_site_aniso_label _atom_site_aniso_U_11 _atom_site_aniso_U_22 _atom_site_aniso_U_33 _atom_site_aniso_U_23 _atom_site_aniso_U_13 _atom_site_aniso_U_12 O1 0.057(4) 0.054(4) 0.089(4) -0.027(3) -0.006(3) 0.003(3) O2 0.098(5) 0.227(11) 0.035(3) -0.031(5) 0.003(4) 0.050(6) N1 0.028(3) 0.077(5) 0.042(4) 0.008(4) -0.002(3) 0.008(3) N2 0.048(4) 0.034(4) 0.049(4) -0.008(3) 0.003(3) 0.000(3) N3 0.052(4) 0.071(5) 0.078(5) -0.034(5) 0.004(4) 0.003(4) N4 0.049(4) 0.047(4) 0.084(5) 0.012(4) -0.005(4) -0.019(4) C1 0.031(4) 0.047(5) 0.050(4) 0.009(4) -0.005(3) 0.002(4) C2 0.046(5) 0.063(6) 0.088(7) 0.028(5) -0.012(5) -0.004(4) C3 0.066(7) 0.104(10) 0.099(9) 0.048(8) -0.008(6) -0.020(7) C4 0.038(5) 0.155(12) 0.053(5) 0.050(7) -0.007(4) -0.007(6) C5 0.029(4) 0.104(8) 0.047(5) 0.001(5) -0.004(4) 0.006(5) C6 0.035(4) 0.060(6) 0.053(5) -0.010(4) -0.006(4) 0.004(4) C7 0.042(4) 0.090(7) 0.048(4) 0.002(5) 0.006(4) -0.007(5) C8 0.050(5) 0.100(8) 0.046(5) 0.027(5) 0.004(4) -0.007(5) C9 0.053(5) 0.065(6) 0.076(6) 0.026(5) -0.003(5) -0.014(5) C10 0.071(7) 0.041(5) 0.152(11) 0.009(6) -0.022(7) -0.015(5) C11 0.077(8) 0.058(7) 0.178(13) -0.035(8) -0.023(9) 0.023(6) C12 0.080(7) 0.078(7) 0.113(9) -0.066(7) 0.004(7) 0.016(6) C13 0.041(5) 0.129(10) 0.047(5) -0.006(6) -0.005(4) 0.008(6) O1S 0.143(9) 0.130(8) 0.156(9) -0.042(7) -0.076(7) -0.007(7) C1S 0.100(9) 0.100(10) 0.103(9) 0.010(7) -0.018(7) 0.002(8) loop_ _atom_type_symbol _atom_type_description _atom_type_scat_dispersion_real _atom_type_scat_dispersion_imag _atom_type_scat_source C C 0.0033 0.0016 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' H H 0.0000 0.0000 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' N N 0.0061 0.0033 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' O O 0.0106 0.0060 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' loop_ _geom_angle_atom_site_label_1 _geom_angle_atom_site_label_2 _geom_angle_atom_site_label_3 _geom_angle C5 N1 C1 119.9(8) C6 N2 C7 126.5(7) C13 N3 C12 127.6(9) C9 N4 C10 108.2(7) N1 C1 C2 119.7(8) N1 C1 C6 115.1(7) C2 C1 C6 125.1(8) C3 C2 C1 122.7(10) C2 C3 C4 115.8(10) C3 C4 C5 120.3(9) N1 C5 C4 121.5(10) N1 C5 C13 114.3(9) C4 C5 C13 124.2(9) O1 C6 N2 123.7(7) O1 C6 C1 122.1(8) N2 C6 C1 114.2(7) N2 C7 C8 110.1(7) C7 C8 C9 115.7(7) N4 C9 C8 111.6(7) N4 C10 C11 113.2(8) C10 C11 C12 114.6(9) N3 C12 C11 110.1(8) O2 C13 N3 122.7(12) O2 C13 C5 123.1(11) N3 C13 C5 114.2(8) loop_ _geom_bond_atom_site_label_1 _geom_bond_atom_site_label_2 _geom_bond_distance O1 C6 1.250(9) O2 C13 1.237(10) N1 C5 1.309(10) N1 C1 1.342(10) N2 C6 1.333(10) N2 C7 1.439(9) N3 C13 1.346(12) N3 C12 1.430(12) N4 C9 1.461(11) N4 C10 1.473(11) C1 C2 1.392(11) C1 C6 1.470(11) C2 C3 1.347(14) C3 C4 1.393(16) C4 C5 1.399(14) C5 C13 1.488(14) C7 C8 1.504(12) C8 C9 1.546(12) C10 C11 1.523(15) C11 C12 1.537(16) O1S C1S 1.374(14) loop_ _geom_torsion_atom_site_label_1 _geom_torsion_atom_site_label_2 _geom_torsion_atom_site_label_3 _geom_torsion_atom_site_label_4 _geom_torsion C5 N1 C1 C2 -0.5(11) C5 N1 C1 C6 178.3(6) N1 C1 C2 C3 2.0(13) C6 C1 C2 C3 -176.7(8) C1 C2 C3 C4 -2.7(14) C2 C3 C4 C5 2.0(14) C1 N1 C5 C4 -0.1(11) C1 N1 C5 C13 179.3(7) C3 C4 C5 N1 -0.7(13) C3 C4 C5 C13 179.9(8) C7 N2 C6 O1 -3.5(12) C7 N2 C6 C1 178.1(7) N1 C1 C6 O1 -175.7(7) C2 C1 C6 O1 3.0(12) N1 C1 C6 N2 2.7(9) C2 C1 C6 N2 -178.6(7) C6 N2 C7 C8 -152.1(7) N2 C7 C8 C9 -57.9(9) C10 N4 C9 C8 167.0(7) C7 C8 C9 N4 80.8(9) C9 N4 C10 C11 -169.0(8) N4 C10 C11 C12 -79.4(12) C13 N3 C12 C11 155.2(9) C10 C11 C12 N3 60.0(12) C12 N3 C13 O2 -0.3(15) C12 N3 C13 C5 178.5(8) N1 C5 C13 O2 175.3(8) C4 C5 C13 O2 -5.3(13) N1 C5 C13 N3 -3.5(10) C4 C5 C13 N3 175.9(8) _journal_paper_doi 10.1021/ol060786r