#------------------------------------------------------------------------------ #$Date: 2012-09-09 20:36:24 +0300 (Sun, 09 Sep 2012) $ #$Revision: 66339 $ #$URL: file:///home/coder/svn-repositories/cod/cif/1/50/83/1508361.cif $ #------------------------------------------------------------------------------ # # This file is available in the Crystallography Open Database (COD), # http://www.crystallography.net/ # # All data on this site have been placed in the public domain by the # contributors. # data_1508361 loop_ _publ_author_name 'Brock, E. Anne' 'Davies, Stephen G.' 'Lee, James A.' 'Roberts, Paul M.' 'Thomson, James E.' _publ_section_title ; Asymmetric Synthesis of the Tropane Alkaloid (+)-Pseudococaine via Ring-Closing Iodoamination. ; _journal_issue 16 _journal_name_full 'Organic letters' _journal_page_first 4278 _journal_page_last 4281 _journal_volume 14 _journal_year 2012 _chemical_absolute_configuration ad _chemical_formula_moiety 'C13 H23 I2 N1 O3' _chemical_formula_sum 'C13 H23 I2 N O3' _chemical_formula_weight 495.14 _space_group_IT_number 4 _symmetry_cell_setting monoclinic _symmetry_space_group_name_Hall 'P 2yb' _symmetry_space_group_name_H-M 'P 1 21 1' _atom_sites_solution_hydrogens difmap _atom_sites_solution_primary direct _cell_angle_alpha 90 _cell_angle_beta 116.827(2) _cell_angle_gamma 90 _cell_formula_units_Z 2 _cell_length_a 11.7106(5) _cell_length_b 7.0979(4) _cell_length_c 11.9661(7) _cell_measurement_reflns_used 2089 _cell_measurement_temperature 150 _cell_measurement_theta_max 27 _cell_measurement_theta_min 5 _cell_volume 887.58(8) _computing_cell_refinement 'DENZO/SCALEPACK (Otwinowski & Minor, 1997)' _computing_data_collection 'COLLECT (Nonius, 2001).' _computing_data_reduction 'DENZO/SCALEPACK (Otwinowski & Minor, 1997)' _computing_molecular_graphics 'CAMERON (Watkin et al., 1996)' _computing_publication_material 'CRYSTALS (Betteridge et al., 2003)' _computing_structure_refinement 'CRYSTALS (Betteridge et al., 2003)' _computing_structure_solution 'SIR92 (Altomare et al., 1994)' _diffrn_ambient_temperature 150 _diffrn_measured_fraction_theta_full 0.988 _diffrn_measured_fraction_theta_max 0.971 _diffrn_measurement_device Area _diffrn_measurement_device_type 'Nonius KappaCCD' _diffrn_measurement_method \w _diffrn_radiation_monochromator graphite _diffrn_radiation_type 'Mo K\a' _diffrn_radiation_wavelength 0.71073 _diffrn_reflns_av_R_equivalents 0.000 _diffrn_reflns_limit_h_max 15 _diffrn_reflns_limit_h_min -15 _diffrn_reflns_limit_k_max 9 _diffrn_reflns_limit_k_min -9 _diffrn_reflns_limit_l_max 15 _diffrn_reflns_limit_l_min -15 _diffrn_reflns_number 3940 _diffrn_reflns_theta_full 26.265 _diffrn_reflns_theta_max 27.647 _diffrn_reflns_theta_min 5.151 _diffrn_standards_number 0 _exptl_absorpt_coefficient_mu 3.547 _exptl_absorpt_correction_T_max 0.87 _exptl_absorpt_correction_T_min 0.81 _exptl_absorpt_correction_type multi-scan _exptl_absorpt_process_details 'DENZO/SCALEPACK (Otwinowski & Minor, 1997)' _exptl_crystal_colour colourless _exptl_crystal_density_diffrn 1.853 _exptl_crystal_density_method 'not measured' _exptl_crystal_description prism _exptl_crystal_F_000 476 _exptl_crystal_size_max 0.220 _exptl_crystal_size_mid 0.060 _exptl_crystal_size_min 0.040 _refine_diff_density_max 2.00 _refine_diff_density_min -3.37 _refine_ls_abs_structure_details 'Flack (1983), 1764 Friedel-pairs' _refine_ls_abs_structure_Flack -0.01(7) _refine_ls_extinction_method None _refine_ls_goodness_of_fit_ref 0.9367 _refine_ls_hydrogen_treatment constr _refine_ls_matrix_type full _refine_ls_number_parameters 173 _refine_ls_number_reflns 3940 _refine_ls_number_restraints 1 _refine_ls_R_factor_all 0.0819 _refine_ls_R_factor_gt 0.0485 _refine_ls_shift/su_max 0.0002173 _refine_ls_shift/su_mean 0.0000093 _refine_ls_structure_factor_coef Fsqd _refine_ls_weighting_details ; Method, part 1, Chebychev polynomial, (Watkin, 1994, Prince, 1982) [weight] = 1.0/[A~0~*T~0~(x)+A~1~*T~1~(x) ... +A~n-1~]*T~n-1~(x)] where A~i~ are the Chebychev coefficients listed below and x= Fcalc/Fmax Method = Robust Weighting (Prince, 1982) W = [weight] * [1-(deltaF/6*sigmaF)^2^]^2^ A~i~ are: 2.91 2.31 0.449 ; _refine_ls_weighting_scheme calc _refine_ls_wR_factor_all 0.1012 _refine_ls_wR_factor_gt 0.0739 _refine_ls_wR_factor_ref 0.1012 _reflns_limit_h_max 13 _reflns_limit_h_min -15 _reflns_limit_k_max 9 _reflns_limit_k_min -9 _reflns_limit_l_max 15 _reflns_limit_l_min 0 _reflns_number_gt 2834 _reflns_number_total 3940 _reflns_threshold_expression I>2.0\s(I) _oxford_diffrn_Wilson_B_factor 3.02 _oxford_diffrn_Wilson_scale 49.70 _oxford_refine_ls_r_factor_ref 0.0819 _oxford_refine_ls_scale 0.14148(6) _oxford_reflns_number_all 3940 _oxford_reflns_threshold_expression_ref I>-3.0\s(I) _[local]_cod_data_source_file ol3020607_si_002.cif _[local]_cod_data_source_block 20.HI _[local]_cod_cif_authors_sg_H-M 'P 21' _[local]_cod_chemical_formula_sum_orig 'C13 H23 I2 N1 O3' _cod_depositor_comments ; The following automatic conversions were performed: '_atom_sites_solution_primary' value 'Direct' changed to 'direct' according to /home/saulius/struct/CIF-dictionaries/cif_core.dic dictionary named 'cif_core.dic' version 2.4.2 from 2011-04-26. Automatic conversion script Id: cif_fix_values 1891 2012-01-12 08:04:46Z andrius ; _cod_database_code 1508361 loop_ _symmetry_equiv_pos_as_xyz x,y,z -x,y+1/2,-z loop_ _atom_site_label _atom_site_type_symbol _atom_site_fract_x _atom_site_fract_y _atom_site_fract_z _atom_site_U_iso_or_equiv _atom_site_occupancy _atom_site_adp_type _atom_site_refinement_flags_posn I1 I 0.62622(9) 0.4184(3) 1.09773(8) 0.0384 1.0000 Uani . C2 C 0.6138(12) 0.4944(17) 0.9176(11) 0.0315 1.0000 Uani . C3 C 0.5747(12) 0.3202(17) 0.8362(12) 0.0372 1.0000 Uani . N4 N 0.5453(9) 0.3885(15) 0.7025(8) 0.0278 1.0000 Uani . C5 C 0.6809(10) 0.416(2) 0.7164(9) 0.0228 1.0000 Uani . C6 C 0.7302(12) 0.5950(19) 0.7993(11) 0.0326 1.0000 Uani . C7 C 0.7394(12) 0.5658(19) 0.9300(11) 0.0340 1.0000 Uani . O8 O 0.7641(7) 0.7458(16) 0.9935(7) 0.0399 1.0000 Uani . C9 C 0.8554(11) 0.6532(18) 0.8044(11) 0.0349 1.0000 Uani . O10 O 0.8468(7) 0.6709(12) 0.6891(7) 0.0364 1.0000 Uani . C11 C 0.9600(11) 0.718(2) 0.6695(13) 0.0390 1.0000 Uani . C12 C 0.9075(13) 0.715(2) 0.5276(13) 0.0537 1.0000 Uani . C13 C 1.0023(12) 0.919(2) 0.7179(11) 0.0475 1.0000 Uani . C14 C 1.0639(13) 0.573(2) 0.7314(14) 0.0501 1.0000 Uani . O15 O 0.9516(9) 0.6830(16) 0.9015(8) 0.0602 1.0000 Uani . C16 C 0.7478(12) 0.237(3) 0.7868(11) 0.0374 1.0000 Uani . C17 C 0.6770(13) 0.1715(18) 0.8634(13) 0.0418 1.0000 Uani . C18 C 0.4690(11) 0.248(2) 0.6015(11) 0.0428 1.0000 Uani . I19 I 0.66539(9) 0.2461(3) 0.40242(8) 0.0372 1.0000 Uani . H21 H 0.5480 0.5919 0.8794 0.0381 1.0000 Uiso R H31 H 0.4977 0.2636 0.8357 0.0448 1.0000 Uiso R H51 H 0.6815 0.4279 0.6350 0.0280 1.0000 Uiso R H61 H 0.6686 0.6973 0.7587 0.0400 1.0000 Uiso R H71 H 0.8072 0.4759 0.9779 0.0409 1.0000 Uiso R H123 H 0.9765 0.7365 0.5067 0.0809 1.0000 Uiso R H122 H 0.8699 0.5939 0.4962 0.0809 1.0000 Uiso R H121 H 0.8440 0.8121 0.4910 0.0809 1.0000 Uiso R H131 H 1.0704 0.9582 0.6990 0.0720 1.0000 Uiso R H132 H 0.9313 1.0044 0.6791 0.0719 1.0000 Uiso R H133 H 1.0322 0.9216 0.8072 0.0719 1.0000 Uiso R H143 H 1.1369 0.6071 0.7191 0.0750 1.0000 Uiso R H142 H 1.0319 0.4526 0.6940 0.0750 1.0000 Uiso R H141 H 1.0877 0.5689 0.8194 0.0750 1.0000 Uiso R H161 H 0.7417 0.1399 0.7272 0.0452 1.0000 Uiso R H162 H 0.8371 0.2627 0.8431 0.0449 1.0000 Uiso R H171 H 0.6390 0.0483 0.8364 0.0499 1.0000 Uiso R H172 H 0.7354 0.1693 0.9522 0.0499 1.0000 Uiso R H183 H 0.4668 0.2880 0.5235 0.0651 1.0000 Uiso R H182 H 0.3840 0.2422 0.5936 0.0650 1.0000 Uiso R H181 H 0.5087 0.1256 0.6244 0.0650 1.0000 Uiso R H41 H 0.5043 0.4981 0.6862 0.0420 1.0000 Uiso R H81 H 0.8349 0.7788 1.0015 0.0600 1.0000 Uiso R loop_ _atom_site_aniso_label _atom_site_aniso_U_11 _atom_site_aniso_U_22 _atom_site_aniso_U_33 _atom_site_aniso_U_23 _atom_site_aniso_U_13 _atom_site_aniso_U_12 I1 0.0430(5) 0.0464(6) 0.0352(5) 0.0066(5) 0.0258(4) 0.0058(5) C2 0.033(7) 0.039(7) 0.027(6) 0.005(5) 0.017(5) 0.000(5) C3 0.032(7) 0.042(8) 0.039(7) 0.018(6) 0.017(6) -0.002(6) N4 0.027(5) 0.032(6) 0.033(5) 0.005(5) 0.020(4) 0.005(5) C5 0.029(6) 0.020(5) 0.021(5) -0.010(6) 0.013(4) -0.008(6) C6 0.043(7) 0.033(7) 0.033(7) -0.007(6) 0.028(6) -0.010(6) C7 0.038(7) 0.043(8) 0.027(6) 0.001(6) 0.020(6) 0.000(6) O8 0.046(5) 0.041(4) 0.036(4) -0.011(5) 0.021(4) -0.006(6) C9 0.027(6) 0.048(8) 0.033(7) 0.003(6) 0.017(6) -0.002(6) O10 0.030(5) 0.055(6) 0.031(4) 0.003(4) 0.020(4) -0.012(4) C11 0.032(6) 0.039(9) 0.061(8) -0.006(7) 0.035(6) -0.014(6) C12 0.047(8) 0.067(12) 0.055(8) 0.005(9) 0.030(7) -0.018(8) C13 0.043(7) 0.053(8) 0.045(7) -0.008(9) 0.019(6) -0.026(9) C14 0.042(8) 0.046(9) 0.064(10) -0.012(8) 0.026(8) -0.001(7) O15 0.036(5) 0.118(11) 0.026(5) 0.001(5) 0.013(4) -0.024(6) C16 0.049(8) 0.032(7) 0.037(6) 0.003(8) 0.025(6) 0.000(8) C17 0.047(8) 0.037(7) 0.049(8) 0.011(6) 0.028(7) 0.010(6) C18 0.043(7) 0.038(7) 0.054(7) -0.024(8) 0.028(6) -0.022(8) I19 0.0424(5) 0.0409(5) 0.0328(4) -0.0040(5) 0.0210(4) -0.0046(5) loop_ _atom_type_symbol _atom_type_scat_dispersion_real _atom_type_scat_dispersion_imag _atom_type_scat_Cromer_Mann_a1 _atom_type_scat_Cromer_Mann_b1 _atom_type_scat_Cromer_Mann_a2 _atom_type_scat_Cromer_Mann_b2 _atom_type_scat_Cromer_Mann_a3 _atom_type_scat_Cromer_Mann_b3 _atom_type_scat_Cromer_Mann_a4 _atom_type_scat_Cromer_Mann_b4 _atom_type_scat_Cromer_Mann_c _atom_type_scat_source C 0.0033 0.0016 2.3100 20.8439 1.0200 10.2075 1.5886 0.5687 0.8650 51.6512 0.2156 'International Tables Vol C 4.2.6.8 and 6.1.1.4' H 0.0000 0.0000 0.4930 10.5109 0.3229 26.1257 0.1402 3.1424 0.0408 57.7998 0.0030 'International Tables Vol C 4.2.6.8 and 6.1.1.4' I -0.4742 1.8119 20.1472 4.3470 18.9949 0.3814 7.5138 27.7660 2.2735 66.8776 4.0712 'International Tables Vol C 4.2.6.8 and 6.1.1.4' N 0.0061 0.0033 12.2126 0.0057 3.1322 9.8933 2.0125 28.9975 1.1663 0.5826 -11.5290 'International Tables Vol C 4.2.6.8 and 6.1.1.4' O 0.0106 0.0060 3.0485 13.2771 2.2868 5.7011 1.5463 0.3239 0.8670 32.9089 0.2508 'International Tables Vol C 4.2.6.8 and 6.1.1.4' loop_ _geom_angle_atom_site_label_1 _geom_angle_atom_site_label_2 _geom_angle_atom_site_label_3 _geom_angle _geom_angle_publ_flag I1 C2 C3 107.6(7) yes I1 C2 C7 111.4(8) yes C3 C2 C7 109.8(10) yes I1 C2 H21 109.0 no C3 C2 H21 109.3 no C7 C2 H21 109.7 no C2 C3 N4 105.7(9) yes C2 C3 C17 116.8(11) yes N4 C3 C17 103.0(10) yes C2 C3 H31 110.3 no N4 C3 H31 110.2 no C17 C3 H31 110.4 no C3 N4 C5 101.0(8) yes C3 N4 C18 113.2(10) yes C5 N4 C18 112.3(8) yes C3 N4 H41 110.3 no C5 N4 H41 110.1 no C18 N4 H41 109.7 no N4 C5 C6 103.9(9) yes N4 C5 C16 101.7(10) yes C6 C5 C16 112.2(9) yes N4 C5 H51 112.0 no C6 C5 H51 113.2 no C16 C5 H51 112.9 no C5 C6 C7 112.1(10) yes C5 C6 C9 109.0(10) yes C7 C6 C9 112.3(10) yes C5 C6 H61 108.1 no C7 C6 H61 107.6 no C9 C6 H61 107.6 no C6 C7 C2 109.3(10) yes C6 C7 O8 108.8(10) yes C2 C7 O8 107.7(9) yes C6 C7 H71 110.6 no C2 C7 H71 109.8 no O8 C7 H71 110.6 no C7 O8 H81 105.3 no C6 C9 O10 111.5(10) yes C6 C9 O15 123.6(11) yes O10 C9 O15 124.9(11) yes C9 O10 C11 121.7(9) yes O10 C11 C12 103.5(10) yes O10 C11 C13 108.0(10) yes C12 C11 C13 109.5(12) yes O10 C11 C14 110.4(11) yes C12 C11 C14 111.5(12) yes C13 C11 C14 113.4(11) yes C11 C12 H123 108.9 no C11 C12 H122 109.5 no H123 C12 H122 109.5 no C11 C12 H121 109.6 no H123 C12 H121 109.5 no H122 C12 H121 109.8 no C11 C13 H131 109.8 no C11 C13 H132 109.9 no H131 C13 H132 109.5 no C11 C13 H133 109.2 no H131 C13 H133 109.3 no H132 C13 H133 109.1 no C11 C14 H143 109.3 no C11 C14 H142 108.7 no H143 C14 H142 109.8 no C11 C14 H141 109.3 no H143 C14 H141 109.7 no H142 C14 H141 109.9 no C5 C16 C17 107.1(10) yes C5 C16 H161 109.4 no C17 C16 H161 110.0 no C5 C16 H162 110.3 no C17 C16 H162 110.0 no H161 C16 H162 110.0 no C16 C17 C3 104.2(11) yes C16 C17 H171 111.0 no C3 C17 H171 111.0 no C16 C17 H172 110.4 no C3 C17 H172 110.2 no H171 C17 H172 110.0 no N4 C18 H183 109.0 no N4 C18 H182 108.6 no H183 C18 H182 110.1 no N4 C18 H181 109.4 no H183 C18 H181 109.9 no H182 C18 H181 109.8 no loop_ _geom_bond_atom_site_label_1 _geom_bond_atom_site_label_2 _geom_bond_distance _geom_bond_publ_flag I1 C2 2.162(11) yes C2 C3 1.512(16) yes C2 C7 1.499(15) yes C2 H21 0.982 no C3 N4 1.554(14) yes C3 C17 1.517(16) yes C3 H31 0.985 no N4 C5 1.532(12) yes N4 C18 1.512(15) yes N4 H41 0.888 no C5 C6 1.556(17) yes C5 C16 1.53(2) yes C5 H51 0.981 no C6 C7 1.532(15) yes C6 C9 1.499(16) yes C6 H61 0.983 no C7 O8 1.447(16) yes C7 H71 0.977 no O8 H81 0.824 no C9 O10 1.343(13) yes C9 O15 1.217(14) yes O10 C11 1.485(12) yes C11 C12 1.523(17) yes C11 C13 1.54(2) yes C11 C14 1.508(19) yes C12 H123 0.960 no C12 H122 0.961 no C12 H121 0.963 no C13 H131 0.963 no C13 H132 0.961 no C13 H133 0.963 no C14 H143 0.961 no C14 H142 0.961 no C14 H141 0.961 no C16 C17 1.558(16) yes C16 H161 0.970 no C16 H162 0.973 no C17 H171 0.968 no C17 H172 0.970 no C18 H183 0.966 no C18 H182 0.957 no C18 H181 0.963 no loop_ _geom_hbond_atom_site_label_D _geom_hbond_atom_site_label_H _geom_hbond_atom_site_label_A _geom_hbond_angle_DHA _geom_hbond_distance_DH _geom_hbond_distance_HA _geom_hbond_distance_DA _geom_hbond_publ_flag C14 H141 O15 121.9(4) 0.961 2.360 2.98(2) yes O8 H81 O15 131.4(3) 0.824 2.290 2.90(2) yes