#------------------------------------------------------------------------------
#$Date: 2022-03-02 05:20:08 +0200 (Wed, 02 Mar 2022) $
#$Revision: 273207 $
#$URL: file:///home/coder/svn-repositories/cod/cif/1/56/64/1566486.cif $
#------------------------------------------------------------------------------
#
# This file is available in the Crystallography Open Database (COD),
# http://www.crystallography.net/. The original data for this entry
# were provided by IUCr Journals, http://journals.iucr.org/.
#
# The file may be used within the scientific community so long as
# proper attribution is given to the journal article from which the
# data were obtained.
#
data_1566486
loop_
_publ_author_name
'Ruth, Paul Niklas'
'Herbst-Irmer, Regine'
'Stalke, Dietmar'
_publ_section_title
;
 Hirshfeld atom refinement based on projector augmented wave densities
 with periodic boundary conditions
;
_journal_issue                   2
_journal_name_full               IUCrJ
_journal_page_first              286
_journal_page_last               297
_journal_paper_doi               10.1107/S2052252522001385
_journal_volume                  9
_journal_year                    2022
_chemical_absolute_configuration unk
_chemical_formula_moiety         'C5 H12 O5'
_chemical_formula_sum            'C5 H12 O5'
_chemical_formula_weight         152.148
_chemical_melting_point          366
_chemical_name_common            xylitol
_space_group_crystal_system      orthorhombic
_space_group_IT_number           19
_space_group_name_Hall           'P 2ac 2ab'
_space_group_name_H-M_alt        'P 21 21 21'
_symmetry_Int_Tables_number      19
_audit_creation_date             2021-09-26
_audit_creation_method
;
Olex2 1.5
(compiled 2021.08.20 svn.r13c46975 for OlexSys, GUI svn.r6396)
;
_cell_angle_alpha                90
_cell_angle_beta                 90
_cell_angle_gamma                90
_cell_formula_units_Z            4
_cell_length_a                   8.264(4)
_cell_length_b                   8.901(2)
_cell_length_c                   8.9223(14)
_cell_measurement_reflns_used    20
_cell_measurement_temperature    122.15
_cell_volume                     656.3(4)
_computing_cell_refinement       'Enraf-Nonius Express'
_computing_data_collection       'Enraf-Nonius Express'
_computing_data_reduction        'DREADD (Blessing, 1987)'
_computing_molecular_graphics    'Olex2 1.5 (Dolomanov et al., 2009)'
_computing_publication_material  'Olex2 1.5 (Dolomanov et al., 2009)'
_computing_structure_refinement  'olex2.refine 1.5 (Bourhis et al., 2015)'
_diffrn_ambient_temperature      122.4
_diffrn_measured_fraction_theta_full 1.0000
_diffrn_measured_fraction_theta_max 0.9860
_diffrn_measurement_device_type  'Enraf Nonius CAD4'
_diffrn_measurement_method       'ω 2θ scans'
_diffrn_radiation_type           'Mo K\a'
_diffrn_radiation_wavelength     0.71073
_diffrn_reflns_av_R_equivalents  0.0171
_diffrn_reflns_av_unetI/netI     0.0234
_diffrn_reflns_Laue_measured_fraction_full 1.0000
_diffrn_reflns_Laue_measured_fraction_max 0.9860
_diffrn_reflns_limit_h_max       20
_diffrn_reflns_limit_h_min       -20
_diffrn_reflns_limit_k_max       21
_diffrn_reflns_limit_k_min       -21
_diffrn_reflns_limit_l_max       21
_diffrn_reflns_limit_l_min       -21
_diffrn_reflns_number            33102
_diffrn_reflns_point_group_measured_fraction_full 1.0000
_diffrn_reflns_point_group_measured_fraction_max 0.9860
_diffrn_reflns_theta_full        25.2417
_diffrn_reflns_theta_max         59.94
_diffrn_reflns_theta_min         3.23
_exptl_absorpt_coefficient_mu    0.139
_exptl_absorpt_correction_type   none
_exptl_crystal_colour            colourless
_exptl_crystal_density_diffrn    1.540
_exptl_crystal_density_method    'not measured'
_exptl_crystal_description       prism
_exptl_crystal_F_000             328.269
_exptl_crystal_size_max          0.37
_exptl_crystal_size_mid          0.32
_exptl_crystal_size_min          0.26
_refine_diff_density_max         0.1390
_refine_diff_density_min         -0.1510
_refine_diff_density_rms         0.0297
_refine_ls_d_res_high            0.4106
_refine_ls_d_res_low             6.3015
_refine_ls_extinction_coef       0.0297(13)
_refine_ls_extinction_expression Fc^*^=kFc[1+0.001xFc²λ³/sin(2θ)]^-1/4^
_refine_ls_goodness_of_fit_ref   0.7026
_refine_ls_hydrogen_treatment    refall
_refine_ls_matrix_type           full
_refine_ls_number_constraints    0
_refine_ls_number_parameters     200
_refine_ls_number_reflns         5407
_refine_ls_number_restraints     0
_refine_ls_restrained_S_all      0.7026
_refine_ls_R_factor_all          0.0159
_refine_ls_R_factor_gt           0.0127
_refine_ls_shift/su_max          -0.0004
_refine_ls_shift/su_mean         0.0000
_refine_ls_structure_factor_coef Fsqd
_refine_ls_weighting_details
'w=1/[σ²(Fo²)+(0.0000P)²] where P=(Fo²+2Fc²)/3'
_refine_ls_weighting_scheme      calc
_refine_ls_wR_factor_gt          0.0215
_refine_ls_wR_factor_ref         0.0222
_reflns_Friedel_coverage         0.0
_reflns_limit_h_max              20
_reflns_limit_h_min              0
_reflns_limit_k_max              21
_reflns_limit_k_min              0
_reflns_limit_l_max              21
_reflns_limit_l_min              0
_reflns_number_gt                4932
_reflns_number_total             5407
_reflns_threshold_expression     I>=2u(I)
_cod_data_source_file            fc5060.cif
_cod_data_source_block           Xy_NoSpherA2_PBE_ORCA
_cod_original_sg_symbol_Hall     ' P 2ac 2ab'
_cod_database_code               1566486
_olex2_refinement_description
;
;
_olex2_submission_special_instructions 'No special instructions were received'
loop_
_space_group_symop_id
_space_group_symop_operation_xyz
1 x,y,z
2 x+1/2,-y+1/2,-z
3 -x,y+1/2,-z+1/2
4 -x+1/2,-y,z+1/2
loop_
_atom_site_label
_atom_site_type_symbol
_atom_site_fract_x
_atom_site_fract_y
_atom_site_fract_z
_atom_site_U_iso_or_equiv
_atom_site_adp_type
_atom_site_occupancy
_atom_site_refinement_flags_posn
O1 O 0.678506(15) 0.228825(15) 0.421632(14) 0.011949(17) Uani 1.000000 .
H11 H 0.7528(5) 0.2420(6) 0.3409(6) 0.0314(11) Uani 1.000000 .
O2 O 0.614762(14) 0.436030(15) 0.182499(14) 0.012195(17) Uani 1.000000 .
H12 H 0.6509(6) 0.4169(5) 0.0842(5) 0.0354(12) Uani 1.000000 .
O3 O 0.318141(16) 0.431184(14) 0.040183(13) 0.011769(16) Uani 1.000000 .
H13 H 0.3280(6) 0.5385(6) 0.0452(5) 0.0333(12) Uani 1.000000 .
O4 O 0.229115(15) 0.129576(14) 0.108520(14) 0.011540(16) Uani 1.000000 .
H14 H 0.2777(6) 0.0514(5) 0.1648(6) 0.0301(11) Uani 1.000000 .
O5 O -0.088658(14) 0.205120(15) 0.216064(15) 0.013285(18) Uani 1.000000 .
H15 H -0.1192(6) 0.1592(6) 0.1267(6) 0.0347(12) Uani 1.000000 .
C1 C 0.524583(17) 0.293778(18) 0.390587(17) 0.011072(19) Uani 1.000000 .
H1A H 0.5126(5) 0.4016(5) 0.4512(4) 0.0288(10) Uani 1.000000 .
H1B H 0.4348(5) 0.2173(5) 0.4326(4) 0.0304(10) Uani 1.000000 .
C2 C 0.500674(17) 0.322874(17) 0.224425(16) 0.009264(17) Uani 1.000000 .
H2 H 0.5259(4) 0.2191(4) 0.1618(4) 0.0200(8) Uani 1.000000 .
C3 C 0.327685(17) 0.375472(16) 0.189870(16) 0.009353(17) Uani 1.000000 .
H3 H 0.2979(5) 0.4664(4) 0.2671(4) 0.0218(8) Uani 1.000000 .
C4 C 0.200812(16) 0.251739(16) 0.210092(16) 0.009407(17) Uani 1.000000 .
H4 H 0.2068(5) 0.2104(5) 0.3235(4) 0.0263(9) Uani 1.000000 .
C5 C 0.031849(18) 0.314787(18) 0.185552(19) 0.01195(2) Uani 1.000000 .
H5A H 0.0133(5) 0.4092(5) 0.2612(6) 0.0326(10) Uani 1.000000 .
H5B H 0.0207(5) 0.3553(5) 0.0710(4) 0.0284(9) Uani 1.000000 .
loop_
_atom_type_symbol
_atom_type_scat_dispersion_real
_atom_type_scat_dispersion_imag
_atom_type_scat_source
_atom_type_scat_dispersion_source
C 0.00347 0.00161 'NoSpherA2: Chem.Sci. 2021, DOI:10.1039/D0SC05526C'
'Henke, Gullikson and Davis, At. Data and Nucl. Data Tables, 1993, 54, 2'
H 0.00000 0.00000 'NoSpherA2: Chem.Sci. 2021, DOI:10.1039/D0SC05526C'
'Henke, Gullikson and Davis, At. Data and Nucl. Data Tables, 1993, 54, 2'
O 0.01158 0.00611 'NoSpherA2: Chem.Sci. 2021, DOI:10.1039/D0SC05526C'
'Henke, Gullikson and Davis, At. Data and Nucl. Data Tables, 1993, 54, 2'
loop_
_geom_angle_atom_site_label_1
_geom_angle_atom_site_label_2
_geom_angle_atom_site_label_3
_geom_angle
_geom_angle_site_symmetry_1
_geom_angle_site_symmetry_3
_geom_angle_publ_flag
C1 O1 H11 112.2(3) . . ?
C2 O2 H12 109.0(3) . . ?
C3 O3 H13 107.3(3) . . ?
C4 O4 H14 106.9(3) . . ?
C5 O5 H15 109.2(3) . . ?
H1A C1 O1 109.7(2) . . ?
H1B C1 O1 107.0(2) . . ?
H1B C1 H1A 108.5(3) . . ?
C2 C1 O1 112.050(12) . . ?
C2 C1 H1A 108.5(2) . . ?
C2 C1 H1B 111.0(2) . . ?
C1 C2 O2 106.855(12) . . ?
H2 C2 O2 109.50(19) . . ?
H2 C2 C1 109.2(2) . . ?
C3 C2 O2 110.284(12) . . ?
C3 C2 C1 111.673(12) . . ?
C3 C2 H2 109.3(2) . . ?
C2 C3 O3 110.204(11) . . ?
H3 C3 O3 108.7(2) . . ?
H3 C3 C2 108.0(2) . . ?
C4 C3 O3 108.808(11) . . ?
C4 C3 C2 113.235(12) . . ?
C4 C3 H3 107.7(2) . . ?
C3 C4 O4 111.042(11) . . ?
H4 C4 O4 109.1(2) . . ?
H4 C4 C3 108.9(2) . . ?
C5 C4 O4 109.782(12) . . ?
C5 C4 C3 110.262(12) . . ?
C5 C4 H4 107.7(2) . . ?
C4 C5 O5 111.251(13) . . ?
H5A C5 O5 108.2(2) . . ?
H5A C5 C4 108.9(2) . . ?
H5B C5 O5 110.4(2) . . ?
H5B C5 C4 109.6(2) . . ?
H5B C5 H5A 108.4(4) . . ?
loop_
_geom_bond_atom_site_label_1
_geom_bond_atom_site_label_2
_geom_bond_distance
_geom_bond_site_symmetry_2
_geom_bond_publ_flag
O1 H11 0.953(5) . ?
O1 C1 1.4244(6) . ?
O2 H12 0.942(5) . ?
O2 C2 1.4294(4) . ?
O3 H13 0.959(5) . ?
O3 C3 1.4268(3) . ?
O4 H14 0.947(5) . ?
O4 C4 1.4347(3) . ?
O5 H15 0.931(5) . ?
O5 C5 1.4208(4) . ?
C1 H1A 1.106(4) . ?
C1 H1B 1.074(4) . ?
C1 C2 1.5179(3) . ?
C2 H2 1.099(4) . ?
C2 C3 1.5356(7) . ?
C3 H3 1.091(3) . ?
C3 C4 1.5313(4) . ?
C4 H4 1.077(4) . ?
C4 C5 1.5207(7) . ?
C5 H5A 1.089(4) . ?
C5 H5B 1.088(4) . ?
loop_
_geom_torsion_atom_site_label_1
_geom_torsion_atom_site_label_2
_geom_torsion_atom_site_label_3
_geom_torsion_atom_site_label_4
_geom_torsion
_geom_torsion_site_symmetry_1
_geom_torsion_site_symmetry_2
_geom_torsion_site_symmetry_3
_geom_torsion_site_symmetry_4
_geom_torsion_publ_flag
O1 C1 C2 O2 -65.987(14) . . . . ?
O1 C1 C2 C3 173.336(12) . . . . ?
O2 C2 C3 O3 49.378(12) . . . . ?
O2 C2 C3 C4 171.510(11) . . . . ?
O3 C3 C2 C1 168.033(12) . . . . ?
O3 C3 C4 O4 60.533(12) . . . . ?
O3 C3 C4 C5 -61.375(13) . . . . ?
O4 C4 C3 C2 -62.373(13) . . . . ?
O4 C4 C5 O5 62.270(13) . . . . ?
O5 C5 C4 C3 -175.079(12) . . . . ?
C1 C2 C3 C4 -69.836(13) . . . . ?
C2 C3 C4 C5 175.719(12) . . . . ?
