#------------------------------------------------------------------------------ #$Date: 2010-01-30 15:59:17 +0200 (Sat, 30 Jan 2010) $ #$Revision: 966 $ #$URL: file:///home/coder/svn-repositories/cod/cif/2/2001652.cif $ #------------------------------------------------------------------------------ # # This file is available in the Crystallography Open Database (COD), # http://www.crystallography.net/. The original data for this entry # were provided by IUCr Journals, http://journals.iucr.org/. # # The file may be used within the scientific community so long as # proper attribution is given to the journal article from which the # data were obtained. # data_2001652 loop_ _publ_author_name 'Iwasaki, H.' 'Sugawara, Y.' 'Adachi, T.' 'Morimoto, S.' 'Watanabe, Y.' _publ_section_title ; Structure of 6-O-methylerythromycin A (clarithromycin) ; _journal_issue 6 _journal_name_full 'Acta Crystallographica Section C' _journal_page_first 1227 _journal_page_last 1230 _journal_volume 49 _journal_year 1993 _chemical_formula_moiety 'C38 H69 N O13,C H4 O' _chemical_formula_sum 'C39 H73 N O14' _chemical_formula_weight 780.01 _symmetry_cell_setting orthorhombic _symmetry_space_group_name_Hall 'P 2ac 2ab' _symmetry_space_group_name_H-M 'P 21 21 21' _atom_type_scat_source 'IntTabIV Tables 2.2A and 2.2C' _cell_angle_alpha 90 _cell_angle_beta 90 _cell_angle_gamma 90 _cell_formula_units_Z 4 _cell_length_a 19.979(2) _cell_length_b 24.115(3) _cell_length_c 8.9980(14) _cell_measurement_reflns_used 24 _cell_measurement_temperature 296 _cell_measurement_theta_max 17.3 _cell_measurement_theta_min 15.2 _cell_volume 4335.0(10) _diffrn_measurement_device 'Rigaku AFC-4' _diffrn_measurement_method \w _diffrn_radiation_type MoK\a _diffrn_radiation_wavelength 0.71073 _diffrn_reflns_av_R_equivalents 0 _diffrn_reflns_limit_h_max 25 _diffrn_reflns_limit_h_min 0 _diffrn_reflns_limit_k_max 31 _diffrn_reflns_limit_k_min 0 _diffrn_reflns_limit_l_max 11 _diffrn_reflns_limit_l_min 0 _diffrn_reflns_number 5577 _diffrn_reflns_theta_max 27.5 _diffrn_standards_decay_% <1 _diffrn_standards_interval_count 100 _diffrn_standards_number 3 _exptl_absorpt_coefficient_mu 0.084 _exptl_absorpt_correction_type none _exptl_crystal_colour Colourless _exptl_crystal_density_diffrn 1.195 _exptl_crystal_density_meas 1.189 _exptl_crystal_density_method 'flotation in carbon tetrachloride/n-hexane' _exptl_crystal_description Rod _exptl_crystal_size_max 0.65 _exptl_crystal_size_mid 0.5 _exptl_crystal_size_min 0.5 _refine_diff_density_max 0.21 _refine_diff_density_min -0.27 _refine_ls_goodness_of_fit_obs 0.7823 _refine_ls_hydrogen_treatment refall _refine_ls_number_parameters 780 _refine_ls_number_reflns 4006 _refine_ls_R_factor_obs 0.045 _refine_ls_shift/esd_max 0.35 _refine_ls_structure_factor_coef F _refine_ls_weighting_scheme ; w = 0.5 for |F~o~| < 7.0; 1.0 for 7.0 <= |F~o~| < 25.0; (25.0/|F~o~|)^2^ for 25.0 <= |F~o~| ; _refine_ls_wR_factor_obs 0.053 _reflns_number_observed 4006 _reflns_number_total 5577 _reflns_observed_criterion >3\s(F~o~) _[local]_cod_data_source_file oh1013.cif _[local]_cod_data_source_block oh1013_structure_1_of_1 loop_ _atom_site_label _atom_site_fract_x _atom_site_fract_y _atom_site_fract_z C(1) .0301(2) .23810(10) .4330(4) C(2) .0062(2) .29730(10) .4602(4) C(3) .0107(2) .33130(10) .3132(3) C(4) .0799(2) .36060(10) .3040(4) C(5) .1002(2) .37530(10) .1428(4) C(6) .1362(2) .32700(10) .0553(4) C(7) .2081(2) .31970(10) .1119(5) C(8) .2512(2) .2761(2) .0304(5) C(9) .2319(2) .21690(10) .0700(4) C(10) .2446(2) .19700(10) .2282(4) C(11) .1772(2) .18270(10) .2998(4) C(12) .1786(2) .16970(10) .4677(4) C(13) .1061(2) .16760(10) .5250(4) C(14) .0966(2) .14500(10) .6809(4) C(15) .0231(3) .1399(2) .7206(5) C(16) -.0650(2) .2933(2) .5218(6) C(17) .0790(2) .41200(10) .4041(4) C(18) .1348(2) .3405(2) -.1099(4) C(19) .3259(2) .2863(2) .0644(8) C(20) .2946(2) .1483(2) .2211(5) C(21) .2203(2) .21110(10) .5550(4) C(22) .0508(3) .2565(2) -.0039(6) O(1) .00540(10) .20720(10) .3440(3) O(3) -.04110(10) .37220(10) .3088(3) O(5) .14860(10) .41970(10) .1427(3) O(6) .10320(10) .27510(10) .0903(3) O(9) .2099(2) .18560(10) -.0226(3) O(11) .14590(10) .13670(10) .2292(3) O(12) .20880(10) .11660(10) .4939(3) O(13) .08000(10) .22470(10) .5250(3) C(1') .1279(2) .47140(10) .0931(4) C(2') .1802(2) .51420(10) .1396(4) C(3') .1594(2) .57050(10) .0765(4) C(4') .1534(2) .56620(10) -.0907(4) C(5') .1037(2) .52130(10) -.1305(4) C(6') .0991(2) .5111(2) -.2967(4) C(7') .1705(2) .66830(10) .1310(6) C(8') .2680(2) .6162(2) .0640(5) N(3') .2026(2) .61420(10) .1368(3) O(2') .1848(2) .51600(10) .2958(3) O(5') .12360(10) .46950(10) -.0639(3) C(1") -.0941(2) .36270(10) .2072(4) C(2") -.1570(2) .39180(10) .2600(4) C(3") -.1549(2) .45530(10) .2442(4) C(4") -.1317(2) .46910(10) .0875(4) C(5") -.0687(2) .43770(10) .0414(4) C(6") -.0528(2) .4452(2) -.1219(5) C(7") -.2236(2) .4806(2) .2762(6) C(8") -.1105(3) .4728(2) .4917(5) O(3") -.10430(10) .48010(10) .3360(3) O(4") -.11970(10) .52740(10) .0700(3) O(5") -.07650(10) .37850(10) .0619(3) C(23)(SOL) -.0151(3) .0798(2) .1337(6) O(23)(SOL) .0040(2) .08480(10) .2814(4) H(2) .039(2) .3150(10) .539(4) H(3) .0040(10) .3050(10) .232(3) H(4) .1130(10) .3350(10) .344(3) H(5) .0620(10) .3860(10) .082(3) H(7A) .212(2) .3110(10) .230(4) H(7B) .229(2) .3550(10) .110(3) H(8) .240(2) .280(2) -.073(4) H(10) .2610(10) .2290(10) .284(3) H(11) .1500(10) .2120(10) .288(3) H(13) .0800(10) .1460(10) .456(3) H(14A) .116(2) .1070(10) .681(4) H(14B) .116(2) .170(2) .752(4) H(15A) -.002(2) .123(2) .642(4) H(15B) .005(2) .176(2) .756(6) H(15C) .015(2) .123(2) .806(4) H(16A) -.068(2) .265(2) .597(5) H(16B) -.095(2) .278(2) .441(4) H(16C) -.085(2) .328(2) .555(4) H(17A) .070(2) .4030(10) .503(4) H(17B) .122(2) .4330(10) .408(4) H(17C) .043(2) .439(2) .367(5) H(18A) .149(2) .310(2) -.161(4) H(18B) .091(2) .3510(10) -.134(4) H(18C) .158(2) .375(2) -.132(5) H(19A) .335(2) .318(2) .017(5) H(19B) .352(2) .254(2) .010(5) H(19C) .338(2) .284(2) .185(5) H(20A) .273(2) .1170(10) .161(4) H(20B) .304(2) .1390(10) .316(4) H(20C) .339(2) .163(2) .191(5) H(21A) .219(2) .2040(10) .661(4) H(21B) .209(2) .249(2) .534(4) H(21C) .267(2) .2070(10) .524(4) H(22A) .031(2) .224(2) .055(5) H(22B) .063(2) .249(2) -.098(5) H(22C) .014(2) .286(2) -.009(6) H(O11) .157(2) .140(2) .136(4) H(O12) .181(2) .0940(10) .461(4) H(1') .0830(10) .4820(10) .135(3) H(2') .229(2) .500(2) .096(5) H(3') .1160(10) .5780(10) .115(3) H(4'A) .140(2) .6010(10) -.138(4) H(4'B) .201(2) .5600(10) -.139(4) H(5') .0560(10) .5310(10) -.094(3) H(6'A) .143(2) .498(2) -.343(5) H(6'B) .067(2) .483(2) -.314(4) H(6'C) .080(2) .547(2) -.347(4) H(7'A) .129(2) .6670(10) .175(4) H(7'B) .198(2) .7000(10) .179(4) H(7'C) .165(2) .681(2) .014(5) H(8'A) .298(2) .6420(10) .116(4) H(8'B) .290(2) .581(2) .072(4) H(8'C) .263(2) .627(2) -.045(4) H(O2') .198(2) .548(2) .322(5) H(1") -.103(2) .3210(10) .197(4) H(2") -.197(2) .3780(10) .200(4) H(2"B) -.169(2) .3840(10) .365(4) H(4") -.1690(10) .4600(10) .014(3) H(5") -.0300(10) .4500(10) .100(4) H(6"A) -.048(2) .4820(10) -.137(4) H(6"B) -.085(2) .428(2) -.178(5) H(6"C) -.016(2) .421(2) -.153(5) H(7"A) -.253(2) .467(2) .200(5) H(7"B) -.238(2) .470(2) .393(4) H(7"C) -.221(2) .519(2) .280(5) H(8"A) -.063(2) .489(2) .535(6) H((8"B) -.119(2) .437(2) .515(6) H(8"C) -.139(2) .498(2) .547(6) H(O4") -.090(2) .534(2) .143(5) H(23A) -.043(2) .1250(10) .108(4) H(23B) .016(2) .088(2) .069(5) H(23C) -.056(3) .043(2) .116(7) H(O23) .008(3) .127(2) .304(6) loop_ _geom_bond_atom_site_label_1 _geom_bond_atom_site_label_2 _geom_bond_distance _geom_bond_publ_flag C(1) C(2) 1.526(5) yes C(1) O(1) 1.200(4) yes C(1) O(13) 1.335(4) yes C(2) C(3) 1.558(5) yes C(2) C(16) 1.529(6) yes C(3) C(4) 1.554(4) yes C(3) O(3) 1.430(4) yes C(4) C(5) 1.548(5) yes C(4) C(17) 1.533(5) yes C(5) C(6) 1.579(5) yes C(5) O(5) 1.444(4) yes C(6) C(7) 1.534(5) yes C(6) C(18) 1.523(6) yes C(6) O(6) 1.448(4) yes C(7) C(8) 1.545(6) yes C(8) C(9) 1.521(6) yes C(8) C(19) 1.543(8) yes C(9) C(10) 1.523(5) yes C(9) O(9) 1.207(5) yes C(10) C(11) 1.531(5) yes C(10) C(20) 1.544(6) yes C(11) C(12) 1.543(5) yes C(11) O(11) 1.423(4) yes C(12) C(13) 1.539(5) yes C(12) C(21) 1.519(5) yes C(12) O(12) 1.435(4) yes C(13) C(14) 1.516(5) yes C(13) O(13) 1.474(4) yes C(14) C(15) 1.518(7) yes C(22) O(6) 1.419(6) yes O(3) C(1") 1.417(4) yes O(5) C(1') 1.387(4) yes C(1') C(2') 1.525(5) yes C(1') O(5') 1.415(4) yes C(2') C(3') 1.530(5) yes C(2') O(2') 1.409(5) yes C(3') C(4') 1.513(5) yes C(3') N(3') 1.467(5) yes C(4') C(5') 1.512(5) yes C(5') C(6') 1.519(6) yes C(5') O(5') 1.443(4) yes C(7') N(3') 1.454(6) yes C(8') N(3') 1.461(6) yes C(1") C(2") 1.517(5) yes C(1") O(5") 1.406(4) yes C(2") C(3") 1.538(6) yes C(3") C(4") 1.520(6) yes C(3") C(7") 1.529(7) yes C(3") O(3") 1.436(5) yes C(4") C(5") 1.527(5) yes C(4") O(4") 1.435(5) yes C(5") C(6") 1.515(5) yes C(5") O(5") 1.447(4) yes C(8") O(3") 1.417(6) yes C(23) O(23) 1.388(7) yes loop_ _geom_angle_atom_site_label_1 _geom_angle_atom_site_label_2 _geom_angle_atom_site_label_3 _geom_angle _geom_angle_publ_flag C(2) C(1) O(1) 124.0(3) yes C(2) C(1) O(13) 111.1(3) yes O(1) C(1) O(13) 124.8(3) yes C(1) C(2) C(3) 109.8(3) yes C(1) C(2) C(16) 106.8(3) yes C(3) C(2) C(16) 113.2(3) yes C(2) C(3) C(4) 109.6(3) yes C(2) C(3) O(3) 110.1(3) yes C(4) C(3) O(3) 109.2(2) yes C(3) C(4) C(5) 112.8(3) yes C(3) C(4) C(17) 109.1(3) yes C(14) C(13) O(13) 107.0(3) yes C(13) C(14) C(15) 111.6(4) yes C(3) O(3) C(1") 116.6(2) yes C(5) O(5) C(1') 117.9(3) yes C(6) O(6) C(22) 118.7(3) yes C(1) O(13) C(13) 119.3(3) yes O(5) C(1') C(2') 108.4(3) yes O(5) C(1') O(5') 108.0(3) yes C(2') C(1') O(5') 109.8(3) yes C(1') C(2') C(3') 108.2(3) yes C(1') C(2') O(2') 109.9(3) yes C(5) C(4) C(17) 111.6(3) yes C(4) C(5) C(6) 114.7(3) yes C(4) C(5) O(5) 110.3(3) yes C(6) C(5) O(5) 104.0(3) yes C(5) C(6) C(7) 110.3(3) yes C(5) C(6) C(18) 108.7(3) yes C(5) C(6) O(6) 108.7(3) yes C(7) C(6) C(18) 111.4(3) yes C(7) C(6) O(6) 104.8(3) yes C(18) C(6) O(6) 112.9(3) yes C(6) C(7) C(8) 116.3(3) yes C(7) C(8) C(9) 112.8(3) yes C(7) C(8) C(19) 109.7(4) yes C(9) C(8) C(19) 110.4(4) yes C(8) C(9) C(10) 118.2(3) yes C(8) C(9) O(9) 121.2(4) yes C(10) C(9) O(9) 120.6(3) yes C(9) C(10) C(11) 108.6(3) yes C(9) C(10) C(20) 107.9(3) yes C(11) C(10) C(20) 114.5(3) yes C(10) C(11) C(12) 116.2(3) yes C(10) C(11) O(11) 112.0(3) yes C(12) C(11) O(11) 106.7(3) yes C(11) C(12) C(13) 108.5(3) yes C(11) C(12) C(21) 112.5(3) yes C(11) C(12) O(12) 110.5(3) yes C(13) C(12) C(21) 111.3(3) yes C(13) C(12) O(12) 108.1(3) yes C(21) C(12) O(12) 105.8(3) yes C(12) C(13) C(14) 116.0(3) yes C(12) C(13) O(13) 107.6(3) yes C(3') C(2') O(2') 111.1(3) yes C(2') C(3') C(4') 109.3(3) yes C(2') C(3') N(3') 110.0(3) yes C(4') C(3') N(3') 117.6(3) yes C(3') C(4') C(5') 109.7(3) yes C(4') C(5') C(6') 112.9(3) yes C(4') C(5') O(5') 109.9(3) yes C(6') C(5') O(5') 106.6(3) yes C(3') N(3') C(7') 111.8(3) yes C(3') N(3') C(8') 112.6(3) yes C(7') N(3') C(8') 110.5(3) yes C(1') O(5') C(5') 113.7(3) yes O(3) C(1") C(2") 109.9(3) yes O(3) C(1") O(5") 111.7(3) yes C(2") C(1") O(5") 111.9(3) yes C(1") C(2") C(3") 114.2(3) yes C(2") C(3") C(4") 108.2(3) yes C(2") C(3") C(7") 110.9(4) yes C(2") C(3") O(3") 112.3(3) yes C(4") C(3") C(7") 111.1(4) yes C(4") C(3") O(3") 103.2(3) yes C(7") C(3") O(3") 110.9(3) yes C(3") C(4") C(5") 113.2(3) yes C(3") C(4") O(4") 111.6(3) yes C(5") C(4") O(4") 108.6(3) yes C(4") C(5") C(6") 112.1(3) yes C(4") C(5") O(5") 111.5(3) yes C(6") C(5") O(5") 105.3(3) yes C(3") O(3") C(8") 117.1(3) yes C(1") O(5") C(5") 114.4(3) yes _cod_database_code 2001652