#------------------------------------------------------------------------------ #$Date: 2011-09-10 06:16:28 +0300 (Sat, 10 Sep 2011) $ #$Revision: 25271 $ #$URL: file:///home/coder/svn-repositories/cod/cif/2/2013642.cif $ #------------------------------------------------------------------------------ # # This file is available in the Crystallography Open Database (COD), # http://www.crystallography.net/. The original data for this entry # were provided by IUCr Journals, http://journals.iucr.org/. # # The file may be used within the scientific community so long as # proper attribution is given to the journal article from which the # data were obtained. # data_2013642 loop_ _publ_author_name 'Fronczek, Frank R.' 'Kamel, Haidy Nasr' 'Slattery, Marc' _publ_section_title ; Three polymorphs (\a, \b, and \d) of D-mannitol at 100K ; _journal_issue 10 _journal_name_full 'Acta Crystallographica Section C' _journal_page_first o567 _journal_page_last o570 _journal_volume 59 _journal_year 2003 _chemical_formula_iupac 'C6 H14 O6' _chemical_formula_moiety 'C6 H14 O6' _chemical_formula_sum 'C6 H14 O6' _chemical_formula_weight 182.17 _chemical_name_systematic ; D-mannitol ; _space_group_IT_number 4 _symmetry_cell_setting monoclinic _symmetry_space_group_name_Hall 'P 2yb' _symmetry_space_group_name_H-M 'P 1 21 1' _atom_sites_solution_hydrogens geom _atom_sites_solution_primary direct _atom_sites_solution_secondary difmap _audit_creation_method SHELXL97 _cell_angle_alpha 90 _cell_angle_beta 118.39(2) _cell_angle_gamma 90 _cell_formula_units_Z 2 _cell_length_a 4.899(2) _cell_length_b 18.268(6) _cell_length_c 5.043(2) _cell_measurement_reflns_used 901 _cell_measurement_temperature 100 _cell_measurement_theta_max 27.5 _cell_measurement_theta_min 2.5 _cell_volume 397.0(3) _computing_cell_refinement 'DENZO and SCALEPACK' _computing_data_collection 'COLLECT (Nonius, 2000)' _computing_data_reduction 'DENZO and SCALEPACK (Otwinowski & Minor, 1997)' _computing_molecular_graphics 'ORTEP-3 for Windows (Farrugia, 1997)' _computing_publication_material SHELXL97 _computing_structure_refinement 'SHELXL97 (Sheldrick, 1997)' _computing_structure_solution 'SIR97 (Altomare et al., 1999)' _diffrn_ambient_temperature 100 _diffrn_measured_fraction_theta_full 0.995 _diffrn_measured_fraction_theta_max 0.995 _diffrn_measurement_device 'Nonius KappaCCD area-detector (with Oxford Cryostream)' _diffrn_measurement_method '\w scans with \k offsets' _diffrn_radiation_monochromator graphite _diffrn_radiation_source 'fine-focus sealed tube' _diffrn_radiation_type MoK\a _diffrn_radiation_wavelength 0.71073 _diffrn_reflns_av_R_equivalents 0.021 _diffrn_reflns_av_sigmaI/netI 0.036 _diffrn_reflns_limit_h_max 6 _diffrn_reflns_limit_h_min -6 _diffrn_reflns_limit_k_max 19 _diffrn_reflns_limit_k_min -23 _diffrn_reflns_limit_l_max 6 _diffrn_reflns_limit_l_min -6 _diffrn_reflns_number 1534 _diffrn_reflns_theta_full 27.5 _diffrn_reflns_theta_max 27.5 _diffrn_reflns_theta_min 2.5 _diffrn_standards_decay_% <2 _diffrn_standards_number 0 _exptl_absorpt_coefficient_mu 0.137 _exptl_absorpt_correction_type none _exptl_crystal_colour colorless _exptl_crystal_density_diffrn 1.524 _exptl_crystal_density_meas 'not measured' _exptl_crystal_density_method 'not measured' _exptl_crystal_description lath _exptl_crystal_F_000 196 _exptl_crystal_size_max 0.42 _exptl_crystal_size_mid 0.12 _exptl_crystal_size_min 0.01 _refine_diff_density_max 0.27 _refine_diff_density_min -0.23 _refine_ls_extinction_method none _refine_ls_goodness_of_fit_ref 1.073 _refine_ls_hydrogen_treatment mixed _refine_ls_matrix_type full _refine_ls_number_parameters 127 _refine_ls_number_reflns 940 _refine_ls_number_restraints 1 _refine_ls_restrained_S_all 1.073 _refine_ls_R_factor_all 0.033 _refine_ls_R_factor_gt 0.031 _refine_ls_shift/su_max <0.001 _refine_ls_shift/su_mean 0.000 _refine_ls_structure_factor_coef Fsqd _refine_ls_weighting_details 'calc w = 1/[\s^2^(Fo^2^)+(0.0362P)^2^+0.0992P] where P=(Fo^2^+2Fc^2^)/3' _refine_ls_weighting_scheme calc _refine_ls_wR_factor_gt 0.078 _refine_ls_wR_factor_ref 0.079 _reflns_number_gt 892 _reflns_number_total 940 _reflns_threshold_expression I>2\s(I) _[local]_cod_data_source_file jz1573.cif _[local]_cod_data_source_block Delta _[local]_cod_cif_authors_sg_H-M 'P 21' _cod_depositor_comments ; The following automatic conversions were performed: '_symmetry_cell_setting' value 'Monoclinic' changed to 'monoclinic' according to /home/saulius/struct/CIF-dictionaries/cif_core.dic dictionary named 'cif_core.dic' version 2.4.1 from 2010-06-29. Automatic conversion script Id: cif_fix_values 1715 2011-07-08 13:25:40Z adriana ; _cod_database_code 2013642 loop_ _symmetry_equiv_pos_as_xyz 'x, y, z' '-x, y+1/2, -z' loop_ _atom_site_label _atom_site_fract_x _atom_site_fract_y _atom_site_fract_z _atom_site_U_iso_or_equiv _atom_site_adp_type _atom_site_calc_flag _atom_site_refinement_flags _atom_site_occupancy _atom_site_type_symbol O1 0.6896(4) 0.53330(9) 0.8932(4) 0.0198(4) Uani d . 1 O H1O 0.732(7) 0.4904(19) 0.971(7) 0.030 Uiso d . 1 H O2 0.1646(4) 0.61137(9) 0.9089(3) 0.0168(4) Uani d . 1 O H2O 0.017(7) 0.5820(18) 0.883(7) 0.025 Uiso d . 1 H O3 0.5121(4) 0.67217(9) 0.4501(4) 0.0158(3) Uani d . 1 O H3O 0.385(7) 0.6533(16) 0.290(7) 0.024 Uiso d . 1 H O4 -0.0530(3) 0.74841(9) 0.4025(3) 0.0159(3) Uani d . 1 O H4O -0.201(7) 0.7265(16) 0.431(6) 0.024 Uiso d . 1 H O5 0.7363(3) 0.81517(9) 0.8615(4) 0.0168(4) Uani d . 1 O H5O 0.770(7) 0.7954(17) 1.021(8) 0.025 Uiso d . 1 H O6 0.2257(4) 0.89418(9) 0.9041(4) 0.0192(4) Uani d . 1 O H6O 0.078(8) 0.8711(19) 0.881(7) 0.029 Uiso d . 1 H C1 0.3781(5) 0.53669(12) 0.6521(5) 0.0168(5) Uani d . 1 C H1A 0.2577 0.4952 0.6696 0.020 Uiso calc R 1 H H1B 0.3797 0.5320 0.4572 0.020 Uiso calc R 1 H C2 0.2221(5) 0.60816(12) 0.6567(5) 0.0137(4) Uani d . 1 C H2 0.0192 0.6117 0.4676 0.016 Uiso calc R 1 H C3 0.4176(5) 0.67513(13) 0.6766(4) 0.0130(4) Uani d . 1 C H3 0.6092 0.6735 0.8768 0.016 Uiso calc R 1 H C4 0.2481(4) 0.74703(13) 0.6612(5) 0.0129(4) Uani d . 1 C H4 0.2246 0.7516 0.8469 0.015 Uiso calc R 1 H C5 0.4173(5) 0.81441(13) 0.6344(5) 0.0134(4) Uani d . 1 C H5 0.4138 0.8114 0.4348 0.016 Uiso calc R 1 H C6 0.2570(5) 0.88554(12) 0.6376(5) 0.0164(5) Uani d . 1 C H6A 0.3774 0.9272 0.6216 0.020 Uiso calc R 1 H H6B 0.0484 0.8868 0.4592 0.020 Uiso calc R 1 H loop_ _atom_site_aniso_label _atom_site_aniso_U_11 _atom_site_aniso_U_22 _atom_site_aniso_U_33 _atom_site_aniso_U_12 _atom_site_aniso_U_13 _atom_site_aniso_U_23 O1 0.0153(8) 0.0138(9) 0.0273(10) 0.0009(6) 0.0076(7) 0.0055(7) O2 0.0174(7) 0.0173(9) 0.0181(8) -0.0048(7) 0.0103(6) -0.0015(7) O3 0.0155(7) 0.0191(8) 0.0149(7) -0.0030(7) 0.0090(6) -0.0036(7) O4 0.0113(7) 0.0165(8) 0.0170(7) -0.0011(6) 0.0044(6) 0.0032(7) O5 0.0128(7) 0.0192(9) 0.0159(8) -0.0025(6) 0.0049(6) 0.0018(7) O6 0.0211(8) 0.0163(9) 0.0241(9) -0.0049(7) 0.0140(7) -0.0053(7) C1 0.0158(10) 0.0118(11) 0.0206(12) -0.0008(9) 0.0070(9) -0.0002(9) C2 0.0141(9) 0.0117(11) 0.0144(10) -0.0010(8) 0.0062(8) -0.0022(9) C3 0.0136(9) 0.0137(10) 0.0134(9) 0.0005(9) 0.0077(8) -0.0004(9) C4 0.0122(9) 0.0112(10) 0.0141(9) 0.0015(8) 0.0052(8) 0.0006(9) C5 0.0131(10) 0.0126(11) 0.0132(10) 0.0005(8) 0.0052(8) 0.0004(9) C6 0.0192(11) 0.0133(12) 0.0179(11) -0.0013(8) 0.0099(9) -0.0005(9) loop_ _atom_type_symbol _atom_type_description _atom_type_scat_dispersion_real _atom_type_scat_dispersion_imag _atom_type_scat_source C C 0.0033 0.0016 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' H H 0.0000 0.0000 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' O O 0.0106 0.0060 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' loop_ _geom_angle_atom_site_label_1 _geom_angle_atom_site_label_2 _geom_angle_atom_site_label_3 _geom_angle C1 O1 H1O 111(2) C2 O2 H2O 110(2) C3 O3 H3O 115(2) C4 O4 H4O 113.9(19) C5 O5 H5O 114(2) C6 O6 H6O 108(2) O1 C1 C2 111.43(18) O1 C1 H1A 109.3 C2 C1 H1A 109.3 O1 C1 H1B 109.3 C2 C1 H1B 109.3 H1A C1 H1B 108.0 O2 C2 C1 111.27(18) O2 C2 C3 106.96(16) C1 C2 C3 112.65(16) O2 C2 H2 108.6 C1 C2 H2 108.6 C3 C2 H2 108.6 O3 C3 C2 110.50(17) O3 C3 C4 111.49(17) C2 C3 C4 112.00(16) O3 C3 H3 107.5 C2 C3 H3 107.5 C4 C3 H3 107.5 O4 C4 C5 105.83(17) O4 C4 C3 111.05(18) C5 C4 C3 113.02(16) O4 C4 H4 108.9 C5 C4 H4 108.9 C3 C4 H4 108.9 O5 C5 C6 110.81(17) O5 C5 C4 111.67(17) C6 C5 C4 112.52(17) O5 C5 H5 107.2 C6 C5 H5 107.2 C4 C5 H5 107.2 O6 C6 C5 112.96(17) O6 C6 H6A 109.0 C5 C6 H6A 109.0 O6 C6 H6B 109.0 C5 C6 H6B 109.0 H6A C6 H6B 107.8 loop_ _geom_bond_atom_site_label_1 _geom_bond_atom_site_label_2 _geom_bond_distance O1 C1 1.431(3) O1 H1O 0.86(3) O2 C2 1.428(2) O2 H2O 0.86(3) O3 C3 1.423(2) O3 H3O 0.82(3) O4 C4 1.431(2) O4 H4O 0.90(3) O5 C5 1.433(2) O5 H5O 0.82(3) O6 C6 1.432(3) O6 H6O 0.80(3) C1 C2 1.519(3) C1 H1A 0.99 C1 H1B 0.99 C2 C3 1.527(3) C2 H2 1.00 C3 C4 1.536(3) C3 H3 1.00 C4 C5 1.525(3) C4 H4 1.00 C5 C6 1.522(3) C5 H5 1.00 C6 H6A 0.99 C6 H6B 0.99 loop_ _geom_hbond_atom_site_label_D _geom_hbond_atom_site_label_H _geom_hbond_atom_site_label_A _geom_hbond_site_symmetry_A _geom_hbond_distance_DH _geom_hbond_distance_HA _geom_hbond_distance_DA _geom_hbond_angle_DHA O1 H1O O6 2_647 0.86(3) 1.84(3) 2.697(2) 172(3) O2 H2O O1 1_455 0.86(3) 1.85(3) 2.698(2) 166(3) O3 H3O O2 1_554 0.82(3) 1.87(3) 2.676(3) 168(3) O4 H4O O3 1_455 0.90(3) 1.76(3) 2.650(2) 171(3) O5 H5O O4 1_656 0.82(3) 1.90(3) 2.705(2) 166(3) O6 H6O O5 1_455 0.80(3) 1.92(4) 2.718(2) 175(3) loop_ _geom_torsion_atom_site_label_1 _geom_torsion_atom_site_label_2 _geom_torsion_atom_site_label_3 _geom_torsion_atom_site_label_4 _geom_torsion O1 C1 C2 O2 -69.4(2) O1 C1 C2 C3 50.7(2) O2 C2 C3 O3 174.05(16) C1 C2 C3 O3 51.5(2) O2 C2 C3 C4 -61.0(2) C1 C2 C3 C4 176.44(18) O3 C3 C4 O4 71.5(2) C2 C3 C4 O4 -52.9(2) O3 C3 C4 C5 -47.2(2) C2 C3 C4 C5 -171.61(17) O4 C4 C5 O5 -173.08(16) C3 C4 C5 O5 -51.3(2) O4 C4 C5 C6 61.6(2) C3 C4 C5 C6 -176.69(17) O5 C5 C6 O6 -67.7(2) C4 C5 C6 O6 58.1(2)