#------------------------------------------------------------------------------ #$Date: 2017-10-13 08:28:26 +0300 (Fri, 13 Oct 2017) $ #$Revision: 201972 $ #$URL: file:///home/coder/svn-repositories/cod/cif/2/10/00/2100006.cif $ #------------------------------------------------------------------------------ # # This file is available in the Crystallography Open Database (COD), # http://www.crystallography.net/. The original data for this entry # were provided by IUCr Journals, http://journals.iucr.org/. # # The file may be used within the scientific community so long as # proper attribution is given to the journal article from which the # data were obtained. # data_2100006 loop_ _publ_author_name 'Asilo\'e J. Mora' 'Edward E. \'Avila' 'Gerzon E. Delgado' 'Andrew N. Fitch' 'Michella Brunelli' _publ_section_title ; Temperature effects on the hydrogen-bond patterns in 4-piperidinecarboxylic acid ; _journal_issue 1 _journal_name_full 'Acta Crystallographica Section B' _journal_page_first 96 _journal_page_last 102 _journal_paper_doi 10.1107/S0108768104031738 _journal_volume 61 _journal_year 2005 _chemical_formula_moiety 'C6 H11 N O2' _chemical_formula_sum 'C6 H11 N O2' _chemical_formula_weight 129.16 _chemical_name_common '4-piperinic acid' _chemical_name_systematic 'piperidine-4-carboxylic acid' _space_group_IT_number 19 _symmetry_cell_setting orthorhombic _symmetry_space_group_name_Hall 'P 2ac 2ab' _symmetry_space_group_name_H-M 'P 21 21 21' _cell_angle_alpha 90 _cell_angle_beta 90 _cell_angle_gamma 90 _cell_formula_units_Z 4 _cell_length_a 11.7537(5) _cell_length_b 10.1013(5) _cell_length_c 5.5787(2) _cell_measurement_temperature 543 _cell_volume 662.35(5) _computing_cell_refinement 'GSAS (Larson and Von Dreele, 2001)' _computing_data_collection 'EXPGUI (Toby, 2001)' _computing_publication_material 'PLATON (Spek, 2003)' _computing_structure_refinement 'GSAS (Larson and Von Dreele, 2001)' _computing_structure_solution 'Dash (David et al., 2001)' _diffrn_measurement_device_type Inet _diffrn_radiation_monochromator 'Double crystal Si <111>' _diffrn_radiation_type synchrotron _diffrn_radiation_wavelength 0.334971 _exptl_absorpt_coefficient_mu 0.166 _exptl_absorpt_correction_T_max 0.000 _exptl_absorpt_correction_T_min 0.000 _exptl_absorpt_correction_type none _exptl_absorpt_process_details ; GSAS Absorption/surface roughness correction: function number 0 No correction is applied. ; _exptl_crystal_density_diffrn 1.295 _exptl_crystal_density_method 'not measured' _exptl_crystal_F_000 280 _refine_ls_goodness_of_fit_all 2.29 _refine_ls_hydrogen_treatment constr _refine_ls_matrix_type full _refine_ls_number_constraints 3 _refine_ls_number_parameters 94 _refine_ls_number_restraints 59 _refine_ls_shift/su_max 0.030 _refine_ls_shift/su_mean 0.010 _refine_ls_structure_factor_coef Inet _reflns_number_observed 1230 _cod_data_source_file av5021.cif _cod_data_source_block 543K _cod_depositor_comments ; The following automatic conversions were performed: '_refine_ls_matrix_type' value 'Full' changed to 'full' according to /home/saulius/struct/CIF-dictionaries/cif_core.dic dictionary named 'cif_core.dic' version 2.4.1 from 2010-06-29. Automatic conversion script Id: cif_fix_values 1715 2011-07-08 13:25:40Z adriana ; _cod_database_code 2100006 loop_ _symmetry_equiv_pos_as_xyz x,y,z 1/2-x,-y,1/2+z 1/2+x,1/2-y,-z -x,1/2+y,1/2-z loop_ _atom_site_label _atom_site_fract_x _atom_site_fract_y _atom_site_fract_z _atom_site_U_iso_or_equiv _atom_site_thermal_displace_type _atom_site_calc_flag _atom_site_refinement_flags _atom_site_occupancy _atom_site_type_symbol O1 0.4272(13) 0.2159(18) 0.402(3) 0.086(6) Uiso . . 1.000 O O2 0.3101(13) 0.274(2) 0.661(3) 0.086(6) Uiso . . 1.000 O N1 0.0249(12) 0.237(3) 0.051(3) 0.061(4) Uiso . . 1.000 N C1 0.3340(14) 0.2529(19) 0.453(3) 0.086(6) Uiso . . 1.000 C C2 0.2416(15) 0.258(3) 0.256(3) 0.061(4) Uiso . . 1.000 C C3 0.185(2) 0.120(2) 0.255(6) 0.061(4) Uiso . . 1.000 C C4 0.095(2) 0.115(2) 0.052(5) 0.061(4) Uiso . . 1.000 C C5 0.079(2) 0.370(2) 0.058(5) 0.061(4) Uiso . . 1.000 C C6 0.170(2) 0.383(2) 0.267(5) 0.061(4) Uiso . . 1.000 C H1 0.287(4) 0.266(6) 0.087(5) 0.29(5) Uiso . . 1.000 H H2 0.150(5) 0.100(6) 0.412(7) 0.29(5) Uiso . . 1.000 H H3 0.243(4) 0.050(4) 0.224(14) 0.29(5) Uiso . . 1.000 H H4 0.045(4) 0.037(4) 0.075(13) 0.29(5) Uiso . . 1.000 H H5 0.134(5) 0.104(6) -0.103(6) 0.29(5) Uiso . . 1.000 H H6 0.118(6) 0.387(6) -0.097(6) 0.29(5) Uiso . . 1.000 H H7 0.019(4) 0.438(5) 0.080(14) 0.29(5) Uiso . . 1.000 H H8 0.132(5) 0.393(6) 0.424(6) 0.29(5) Uiso . . 1.000 H H9 0.218(4) 0.462(4) 0.238(13) 0.29(5) Uiso . . 1.000 H H10 -0.021(4) 0.231(5) 0.197(7) 0.29(5) Uiso . . 1.000 H H11 -0.018(5) 0.232(5) -0.099(7) 0.29(5) Uiso . . 1.000 H loop_ _atom_type_symbol _atom_type_description _atom_type_scat_dispersion_real _atom_type_scat_dispersion_imag _atom_type_scat_source C C 0.0033 0.0016 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' H H 0.0000 0.0000 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' O O 0.0106 0.0060 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' N N 0.0061 0.0033 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' loop_ _geom_angle_atom_site_label_1 _geom_angle_atom_site_label_2 _geom_angle_atom_site_label_3 _geom_angle _geom_angle_publ_flag C4 N1 C5 120.9(16) yes H10 N1 H11 115(4) no C4 N1 H11 104(4) no C5 N1 H10 106(4) no C4 N1 H10 105(4) no C5 N1 H11 107(4) no O1 C1 C2 119.1(16) yes O2 C1 C2 120.8(16) yes O1 C1 O2 119.8(18) yes C1 C2 C6 113(2) yes C3 C2 C6 120.8(17) yes C1 C2 C3 106(2) yes C2 C3 C4 109.0(19) yes N1 C4 C3 110.8(18) yes N1 C5 C6 112.5(18) yes C2 C6 C5 106.0(18) no C1 C2 H1 106(3) no C3 C2 H1 106(4) no C6 C2 H1 104(4) no C2 C3 H2 111(4) no C2 C3 H3 110(3) no C4 C3 H2 111(4) no C4 C3 H3 109(5) no H2 C3 H3 107(6) no N1 C4 H4 109(3) no N1 C4 H5 110(4) no C3 C4 H4 110(4) no C3 C4 H5 109(4) no H4 C4 H5 108(6) no N1 C5 H6 109(4) no N1 C5 H7 109(3) no C6 C5 H6 108(4) no C6 C5 H7 109(5) no H6 C5 H7 108(6) no C2 C6 H8 112(4) no C2 C6 H9 110(3) no C5 C6 H8 111(4) no C5 C6 H9 109(4) no H8 C6 H9 109(6) no loop_ _geom_bond_atom_site_label_1 _geom_bond_atom_site_label_2 _geom_bond_site_symmetry_1 _geom_bond_site_symmetry_2 _geom_bond_distance _geom_bond_publ_flag O1 C1 . . 1.19(2) yes O2 C1 . . 1.21(2) yes N1 C4 . . 1.48(3) yes N1 C5 . . 1.49(3) yes N1 H11 . . 0.98(5) no N1 H10 . . 0.98(4) no C1 C2 . . 1.55(2) yes C2 C3 . . 1.55(4) yes C2 C6 . . 1.52(3) yes C3 C4 . . 1.55(4) yes C5 C6 . . 1.59(4) yes C2 H1 . . 1.09(4) no C3 H2 . . 0.99(5) no C3 H3 . . 1.00(5) no C4 H4 . . 0.99(5) no C4 H5 . . 0.99(5) no C5 H6 . . 0.99(5) no C5 H7 . . 0.99(5) no C6 H8 . . 0.99(5) no C6 H9 . . 0.99(5) no loop_ _geom_hbond_atom_site_label_D _geom_hbond_atom_site_label_H _geom_hbond_atom_site_label_A _geom_hbond_site_symmetry_A _geom_hbond_distance_DH _geom_hbond_distance_HA _geom_hbond_distance_DA _geom_hbond_angle_DHA _geom_hbond_publ_flag N1 H10 O1 3_456 0.98(4) 2.38(4) 3.30(2) 155(4) yes N1 H10 O2 3_456 0.98(4) 2.14(5) 3.00(2) 145(4) yes N1 H11 O1 3_455 0.98(5) 1.88(5) 2.82(2) 158(5) yes C2 H1 O2 1_554 1.09(4) 2.39(3) 3.42(2) 157(4) yes loop_ _geom_torsion_atom_site_label_1 _geom_torsion_atom_site_label_2 _geom_torsion_atom_site_label_3 _geom_torsion_atom_site_label_4 _geom_torsion _geom_torsion_publ_flag C4 N1 C5 C6 -51(3) no C5 N1 C4 C3 49(3) no O1 C1 C2 C3 89(2) yes O1 C1 C2 C6 -137(2) yes O2 C1 C2 C3 -85(3) yes O2 C1 C2 C6 50(3) yes C6 C2 C3 C4 53(3) no C3 C2 C6 C5 -52(3) no C1 C2 C6 C5 -178.8(17) no C1 C2 C3 C4 -177.1(18) no C2 C3 C4 N1 -45(3) no N1 C5 C6 C2 46(2) no loop_ _cod_related_entry_id _cod_related_entry_database _cod_related_entry_code 1 ChemSpider 3641