#------------------------------------------------------------------------------
#$Date: 2017-10-13 08:28:26 +0300 (Fri, 13 Oct 2017) $
#$Revision: 201972 $
#$URL: file:///home/coder/svn-repositories/cod/cif/2/10/51/2105146.cif $
#------------------------------------------------------------------------------
#
# This file is available in the Crystallography Open Database (COD),
# http://www.crystallography.net/. The original data for this entry
# were provided by IUCr Journals, http://journals.iucr.org/.
#
# The file may be used within the scientific community so long as
# proper attribution is given to the journal article from which the
# data were obtained.
#
data_2105146
loop_
_publ_author_name
'Tumanov, Nikolay A.'
'Boldyreva, Elena V.'
_publ_section_title
;
X-ray diffraction and Raman study of DL-alanine at high
pressure: revision of phase transitions
;
_journal_coeditor_code GP5051
_journal_issue 4
_journal_name_full 'Acta Crystallographica Section B'
_journal_page_first 412
_journal_page_last 423
_journal_paper_doi 10.1107/S0108768112028972
_journal_volume 68
_journal_year 2012
_chemical_formula_moiety 'C3 H7 N O2'
_chemical_formula_sum 'C3 H7 N O2'
_chemical_formula_weight 89.10
_chemical_name_common DL-alanine
_chemical_name_systematic 'DL-2-Aminopropionic Acid '
_space_group_IT_number 33
_symmetry_cell_setting orthorhombic
_symmetry_space_group_name_Hall 'P 2c -2n'
_symmetry_space_group_name_H-M 'P n a 21'
_atom_sites_solution_hydrogens geom
_atom_sites_solution_primary direct
_atom_sites_solution_secondary difmap
_audit_creation_method SHELXL-97
_cell_angle_alpha 90.00
_cell_angle_beta 90.00
_cell_angle_gamma 90.00
_cell_formula_units_Z 4
_cell_length_a 11.7991(15)
_cell_length_b 5.7917(15)
_cell_length_c 5.7900(4)
_cell_measurement_reflns_used 1215
_cell_measurement_temperature 293(2)
_cell_measurement_theta_max 26.7858
_cell_measurement_theta_min 3.9114
_cell_volume 395.67(12)
_computing_cell_refinement 'CrysAlis Pro (Oxford Diffraction Ltd, 2010)'
_computing_data_collection 'CrysAlis Pro (Oxford Diffraction Ltd, 2010)'
_computing_data_reduction 'CrysAlis Pro (Oxford Diffraction Ltd, 2010)'
_computing_molecular_graphics 'Mercury (Macrae et al., 2008)'
_computing_publication_material
;
Mercury (Macrae et al., 2008),
PLATON (Spek, 2009),
enCIFer (Allen et al., 2004)
;
_computing_structure_refinement 'SHELXL-97 (Sheldrick, 1997)'
_computing_structure_solution 'SHELXS-97 (Sheldrick, 1990)'
_diffrn_ambient_temperature 293(2)
_diffrn_detector_area_resol_mean 10.3457
_diffrn_measured_fraction_theta_full 0.545
_diffrn_measured_fraction_theta_max 0.545
_diffrn_measurement_device_type 'Oxford Diffraction Gemini Ultra R'
_diffrn_measurement_method \w
_diffrn_radiation_monochromator graphite
_diffrn_radiation_type MoK\a
_diffrn_radiation_wavelength 0.71073
_diffrn_reflns_av_R_equivalents 0.0561
_diffrn_reflns_av_sigmaI/netI 0.0445
_diffrn_reflns_limit_h_max 13
_diffrn_reflns_limit_h_min -13
_diffrn_reflns_limit_k_max 5
_diffrn_reflns_limit_k_min -5
_diffrn_reflns_limit_l_max 7
_diffrn_reflns_limit_l_min -7
_diffrn_reflns_number 2319
_diffrn_reflns_theta_full 26.84
_diffrn_reflns_theta_max 26.84
_diffrn_reflns_theta_min 3.92
_exptl_absorpt_coefficient_mu 0.125
_exptl_absorpt_correction_T_max 0.476
_exptl_absorpt_correction_T_min 0.417
_exptl_absorpt_correction_type gaussian
_exptl_absorpt_process_details
;
Absorb6.1 (R. J. Angel, 2004)
;
_exptl_crystal_colour colorless
_exptl_crystal_density_diffrn 1.496
_exptl_crystal_density_method 'not measured'
_exptl_crystal_description plate
_exptl_crystal_F_000 192
_exptl_crystal_size_max 0.16
_exptl_crystal_size_mid 0.10
_exptl_crystal_size_min 0.06
_refine_diff_density_max 0.132
_refine_diff_density_min -0.138
_refine_ls_extinction_method none
_refine_ls_goodness_of_fit_ref 1.047
_refine_ls_hydrogen_treatment constr
_refine_ls_matrix_type full
_refine_ls_number_parameters 57
_refine_ls_number_reflns 462
_refine_ls_number_restraints 1
_refine_ls_restrained_S_all 1.045
_refine_ls_R_factor_all 0.0497
_refine_ls_R_factor_gt 0.0367
_refine_ls_shift/su_max 0.000
_refine_ls_shift/su_mean 0.000
_refine_ls_structure_factor_coef Fsqd
_refine_ls_weighting_details
'calc w=1/[\s^2^(Fo^2^)+(0.0287P)^2^+0.0000P] where P=(Fo^2^+2Fc^2^)/3'
_refine_ls_weighting_scheme calc
_refine_ls_wR_factor_gt 0.0629
_refine_ls_wR_factor_ref 0.0671
_reflns_number_gt 385
_reflns_number_total 462
_reflns_threshold_expression I>2\s(I)
_iucr_refine_instructions_details
;
TITL DLALA_15KBAR_NV_OU IN PNA2(1)
CELL 0.71073 11.79914 5.79173 5.79000 90.00000 90.00000 90.00000
ZERR 4 0.00150 0.00153 0.00043 0.00000 0.00000 0.00000
LATT -1
SYMM -X, -Y, Z+ 0.50000
SYMM -X+ 0.50000, Y+ 0.50000, Z+ 0.50000
SYMM X+ 0.50000, -Y+ 0.50000, Z
SFAC C H N O
UNIT 12 28 4 8
PLAN 30
FMAP 2
L.S. 10
ACTA
CONF
BOND $H
EQIV $1 x,y,-1+z
EQIV $2 1-x,1-y,-1/2+z
EQIV $3 3/2-x,1/2+y,-1/2+z
HTAB N1 O2_$2
HTAB N1 O1_$1
HTAB N1 O2_$1
HTAB N1 O1_$3
WGHT 0.028700
FVAR 6.60954
O2 4 0.589992 0.484196 0.603311 11.00000 0.03919 0.04218 =
0.02853 -0.00468 0.00068 0.01036
O1 4 0.684098 0.179982 0.743547 11.00000 0.03837 0.05328 =
0.01608 0.00049 -0.00294 0.00816
C1 1 0.644385 0.301045 0.581300 11.00000 0.01579 0.04289 =
0.01971 -0.00084 0.00327 -0.00629
C2 1 0.662233 0.202411 0.336983 11.00000 0.03004 0.02446 =
0.01498 0.00139 -0.00175 -0.00091
AFIX 13
H2 2 0.741978 0.157777 0.321309 11.00000 -1.20000
AFIX 0
C3 1 0.590729 -0.005481 0.292957 11.00000 0.04324 0.04238 =
0.01936 -0.00305 -0.00056 -0.00539
AFIX 137
H3B 2 0.607971 -0.066824 0.142987 11.00000 -1.20000
H3C 2 0.512134 0.036925 0.299180 11.00000 -1.20000
H3A 2 0.606080 -0.120294 0.408379 11.00000 -1.20000
AFIX 0
N1 3 0.637423 0.385318 0.163684 11.00000 0.03336 0.03939 =
0.01795 -0.00304 0.00271 -0.00238
AFIX 137
H1C 2 0.681896 0.506729 0.189468 11.00000 -1.20000
H1B 2 0.565169 0.427817 0.175530 11.00000 -1.20000
H1A 2 0.650366 0.330793 0.022413 11.00000 -1.20000
HKLF 4
REM DLALA_15KBAR_NV_OU IN PNA2(1)
REM R1 = 0.0367 for 385 Fo > 4sig(Fo) and 0.0497 for all 462 data
REM 57 parameters refined using 1 restraints
END
WGHT 0.0288 0.0000
REM Highest difference peak 0.132, deepest hole -0.138, 1-sigma level 0.033
Q1 1 0.6557 0.2587 0.4538 11.00000 0.05 0.13
Q2 1 0.5579 0.7089 0.6333 11.00000 0.05 0.11
Q3 1 0.6205 -0.1879 0.1383 11.00000 0.05 0.11
Q4 1 0.5935 0.6072 0.8159 11.00000 0.05 0.11
Q5 1 0.6335 -0.0081 0.7413 11.00000 0.05 0.10
Q6 1 0.7413 0.4000 0.7382 11.00000 0.05 0.09
Q7 1 0.5795 0.0071 0.1794 11.00000 0.05 0.09
Q8 1 0.5953 0.1347 0.0185 11.00000 0.05 0.09
Q9 1 0.8755 0.1996 0.2976 11.00000 0.05 0.09
Q10 1 0.8216 0.3681 0.2224 11.00000 0.05 0.09
Q11 1 0.6987 -0.1859 0.0865 11.00000 0.05 0.09
Q12 1 0.6784 -0.2414 0.1034 11.00000 0.05 0.09
Q13 1 0.5428 0.1163 0.1636 11.00000 0.05 0.09
Q14 1 0.7178 0.0033 0.6894 11.00000 0.05 0.08
Q15 1 0.5912 0.4478 0.7106 11.00000 0.05 0.08
Q16 1 0.5635 -0.3088 0.1424 11.00000 0.05 0.08
Q17 1 0.6823 0.7406 0.2448 11.00000 0.05 0.08
Q18 1 0.7219 0.4055 0.2267 11.00000 0.05 0.08
Q19 1 0.7160 0.3995 0.4511 11.00000 0.05 0.08
Q20 1 0.6972 0.4234 -0.1063 11.00000 0.05 0.08
Q21 1 0.7352 0.6068 0.1675 11.00000 0.05 0.08
Q22 1 0.5843 -0.3292 -0.0265 11.00000 0.05 0.08
Q23 1 0.5765 -0.0717 0.0742 11.00000 0.05 0.07
Q24 1 0.8242 0.0783 0.2340 11.00000 0.05 0.07
Q25 1 0.7415 0.0274 0.3817 11.00000 0.05 0.07
Q26 1 0.6215 0.5846 0.4048 11.00000 0.05 0.07
Q27 1 0.6434 0.6411 0.6539 11.00000 0.05 0.07
Q28 1 0.4589 0.0270 0.4099 11.00000 0.05 0.07
Q29 1 0.5728 0.2470 0.3139 11.00000 0.05 0.07
Q30 1 0.6063 0.5618 0.5942 11.00000 0.05 0.07
;
_cod_data_source_file gp5051.cif
_cod_data_source_block dlala_15kbar
_cod_database_code 2105146
loop_
_symmetry_equiv_pos_as_xyz
'x, y, z'
'-x, -y, z+1/2'
'-x+1/2, y+1/2, z+1/2'
'x+1/2, -y+1/2, z'
loop_
_atom_site_type_symbol
_atom_site_label
_atom_site_fract_x
_atom_site_fract_y
_atom_site_fract_z
_atom_site_U_iso_or_equiv
_atom_site_adp_type
_atom_site_calc_flag
_atom_site_refinement_flags
_atom_site_occupancy
_atom_site_symmetry_multiplicity
O O2 0.5900(2) 0.4842(6) 0.6033(4) 0.0366(9) Uani d . 1 1
O O1 0.68410(17) 0.1800(4) 0.7435(3) 0.0359(9) Uani d . 1 1
C C1 0.6444(2) 0.3010(8) 0.5813(5) 0.0261(13) Uani d . 1 1
C C2 0.6622(2) 0.2024(8) 0.3370(4) 0.0232(13) Uani d . 1 1
H H2 0.7420 0.1578 0.3213 0.028 Uiso calc R 1 1
C C3 0.5907(3) -0.0055(10) 0.2930(6) 0.0350(13) Uani d . 1 1
H H3B 0.6080 -0.0668 0.1430 0.042 Uiso calc R 1 1
H H3C 0.5121 0.0369 0.2992 0.042 Uiso calc R 1 1
H H3A 0.6061 -0.1203 0.4084 0.042 Uiso calc R 1 1
N N1 0.63742(19) 0.3853(6) 0.1637(3) 0.0302(9) Uani d . 1 1
H H1C 0.6819 0.5067 0.1895 0.036 Uiso calc R 1 1
H H1B 0.5652 0.4278 0.1755 0.036 Uiso calc R 1 1
H H1A 0.6504 0.3308 0.0224 0.036 Uiso calc R 1 1
loop_
_atom_site_aniso_label
_atom_site_aniso_U_11
_atom_site_aniso_U_22
_atom_site_aniso_U_33
_atom_site_aniso_U_12
_atom_site_aniso_U_13
_atom_site_aniso_U_23
O2 0.0392(15) 0.042(3) 0.0285(15) 0.0104(11) 0.0007(11) -0.0047(12)
O1 0.0384(14) 0.053(3) 0.0161(8) 0.0082(12) -0.0029(10) 0.0005(14)
C1 0.016(2) 0.043(5) 0.0197(16) -0.0063(14) 0.0033(13) -0.001(2)
C2 0.030(2) 0.024(5) 0.0150(14) -0.0009(15) -0.0018(11) 0.001(2)
C3 0.043(3) 0.042(5) 0.019(2) -0.0054(17) -0.0006(13) -0.0031(16)
N1 0.0334(16) 0.039(4) 0.0180(11) -0.0024(13) 0.0027(10) -0.0030(16)
loop_
_atom_type_symbol
_atom_type_description
_atom_type_scat_dispersion_real
_atom_type_scat_dispersion_imag
_atom_type_scat_source
C C 0.0033 0.0016 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4'
H H 0.0000 0.0000 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4'
N N 0.0061 0.0033 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4'
O O 0.0106 0.0060 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4'
loop_
_geom_angle_atom_site_label_1
_geom_angle_atom_site_label_2
_geom_angle_atom_site_label_3
_geom_angle
O2 C1 O1 126.0(3)
O2 C1 C2 118.7(3)
O1 C1 C2 115.3(3)
N1 C2 C3 110.4(3)
N1 C2 C1 109.2(3)
C3 C2 C1 112.3(3)
N1 C2 H2 108.3
C3 C2 H2 108.3
C1 C2 H2 108.3
C2 C3 H3B 109.5
C2 C3 H3C 109.5
H3B C3 H3C 109.5
C2 C3 H3A 109.5
H3B C3 H3A 109.5
H3C C3 H3A 109.5
C2 N1 H1C 109.5
C2 N1 H1B 109.5
H1C N1 H1B 109.5
C2 N1 H1A 109.5
H1C N1 H1A 109.5
H1B N1 H1A 109.5
loop_
_geom_bond_atom_site_label_1
_geom_bond_atom_site_label_2
_geom_bond_distance
O2 C1 1.246(5)
O1 C1 1.262(4)
C1 C2 1.540(4)
C2 N1 1.488(4)
C2 C3 1.492(6)
C2 H2 0.9800
C3 H3B 0.9600
C3 H3C 0.9600
C3 H3A 0.9600
N1 H1C 0.8900
N1 H1B 0.8900
N1 H1A 0.8900
loop_
_geom_hbond_atom_site_label_D
_geom_hbond_atom_site_label_H
_geom_hbond_atom_site_label_A
_geom_hbond_site_symmetry_A
_geom_hbond_distance_DH
_geom_hbond_distance_HA
_geom_hbond_distance_DA
_geom_hbond_angle_DHA
N1 H1B O2 2_664 0.89 1.95 2.810(3) 163.2
N1 H1A O1 1_554 0.89 1.88 2.763(3) 172.5
N1 H1A O2 1_554 0.89 2.68 3.342(3) 132.0
N1 H1C O1 3_654 0.89 1.90 2.750(3) 159.4
loop_
_geom_torsion_atom_site_label_1
_geom_torsion_atom_site_label_2
_geom_torsion_atom_site_label_3
_geom_torsion_atom_site_label_4
_geom_torsion
O2 C1 C2 N1 16.2(5)
O1 C1 C2 N1 -166.3(3)
O2 C1 C2 C3 -106.5(5)
O1 C1 C2 C3 71.0(5)
loop_
_cod_related_entry_id
_cod_related_entry_database
_cod_related_entry_code
1 ChemSpider 582