#------------------------------------------------------------------------------
#$Date: 2025-08-19 13:43:10 +0300 (Tue, 19 Aug 2025) $
#$Revision: 301803 $
#$URL: file:///home/coder/svn-repositories/cod/cif/2/20/43/2204377.cif $
#------------------------------------------------------------------------------
#
# This file is available in the Crystallography Open Database (COD),
# http://www.crystallography.net/. The original data for this entry
# were provided by IUCr Journals, http://journals.iucr.org/.
#
# The file may be used within the scientific community so long as
# proper attribution is given to the journal article from which the
# data were obtained.
#
data_2204377
loop_
_publ_author_name
'Naotake Nakamura'
'Hirotaka Shimizu'
'Yoshihiro Ogawa'
_publ_section_title
;
 Nonadecane-1,19-dithiol
;
_journal_issue                   10
_journal_name_full               'Acta Crystallographica Section E'
_journal_page_first              o1684
_journal_page_last               o1686
_journal_paper_doi               10.1107/S1600536804021312
_journal_volume                  60
_journal_year                    2004
_chemical_formula_iupac          'C19 H40 S2'
_chemical_formula_moiety         'C19 H40 S2'
_chemical_formula_sum            'C19 H40 S2'
_chemical_formula_weight         332.65
_space_group_IT_number           2
_symmetry_cell_setting           triclinic
_symmetry_space_group_name_Hall  '-P 1'
_symmetry_space_group_name_H-M   'P -1'
_cell_angle_alpha                92.452(12)
_cell_angle_beta                 92.094(9)
_cell_angle_gamma                102.365(13)
_cell_formula_units_Z            2
_cell_length_a                   4.7557(6)
_cell_length_b                   5.5781(13)
_cell_length_c                   40.930(4)
_cell_measurement_reflns_used    24
_cell_measurement_temperature    296.0(10)
_cell_measurement_theta_max      18.2
_cell_measurement_theta_min      9.4
_cell_volume                     1058.5(3)
_computing_cell_refinement
;
    MSC/AFC Diffractometer Control Software
;
_computing_data_collection
;
    MSC/AFC Diffractometer Control Software
    (Molecular Structure Corporation, 1992)
;
_computing_data_reduction
;
    CrystalStructure (Molecular Structure Corporation &
    Rigaku Corporation, 2001)
;
_computing_molecular_graphics
;
    ORTEP-3 for Windows (Farrugia, 1997)
;
_computing_publication_material
;
    CrystalStructure
;
_computing_structure_refinement
;
    CRYSTALS (Watkin et al., 1996)
;
_computing_structure_solution
;
    SIR92 (Altomare et al., 1994)
;
_diffrn_measured_fraction_theta_full 0.9539
_diffrn_measured_fraction_theta_max 0.9539
_diffrn_measurement_device_type  'Rigaku AFC-5R'
_diffrn_measurement_method       ω
_diffrn_radiation_type           'Cu K\a'
_diffrn_radiation_wavelength     1.5418
_diffrn_reflns_av_R_equivalents  0.024
_diffrn_reflns_limit_h_max       5
_diffrn_reflns_limit_h_min       -5
_diffrn_reflns_limit_k_max       6
_diffrn_reflns_limit_k_min       -1
_diffrn_reflns_limit_l_max       49
_diffrn_reflns_limit_l_min       -49
_diffrn_reflns_number            5132
_diffrn_reflns_theta_full        70.11
_diffrn_reflns_theta_max         70.11
_diffrn_standards_decay_%        21.53
_diffrn_standards_interval_count 150
_diffrn_standards_number         3
_exptl_absorpt_coefficient_mu    2.206
_exptl_absorpt_correction_T_max  0.9765
_exptl_absorpt_correction_T_min  0.7476
_exptl_absorpt_correction_type   psi-scan
_exptl_absorpt_process_details   '(North et al., 1968)'
_exptl_crystal_colour            colorless
_exptl_crystal_density_diffrn    1.044
_exptl_crystal_density_method    'not measured'
_exptl_crystal_description       plate
_exptl_crystal_F_000             372.00
_exptl_crystal_size_max          0.68
_exptl_crystal_size_mid          0.15
_exptl_crystal_size_min          0.01
_refine_diff_density_max         0.41
_refine_diff_density_min         -0.50
_refine_ls_extinction_method     none
_refine_ls_goodness_of_fit_ref   1.003
_refine_ls_hydrogen_treatment    constr
_refine_ls_number_parameters     234
_refine_ls_number_reflns         3822
_refine_ls_R_factor_gt           0.061
_refine_ls_shift/su_max          0.001
_refine_ls_structure_factor_coef Fsqd
_refine_ls_weighting_details
'w = (4Fo²)/[0.0001Fo² + 7.6σ²(Fo) + 0.19]'
_refine_ls_weighting_scheme      calc
_refine_ls_wR_factor_ref         0.127
_reflns_number_gt                1834
_reflns_number_total             3825
_reflns_threshold_expression     F²>2σ(F²)
_cod_data_source_file            rn6022.cif
_cod_data_source_block           I
_cod_database_code               2204377
loop_
_symmetry_equiv_pos_site_id
_symmetry_equiv_pos_as_xyz
1 x,y,z
2 -x,-y,-z
loop_
_atom_site_label
_atom_site_fract_x
_atom_site_fract_y
_atom_site_fract_z
_atom_site_U_iso_or_equiv
_atom_site_adp_type
_atom_site_calc_flag
_atom_site_refinement_flags
_atom_site_occupancy
_atom_site_type_symbol
S1 0.8556(3) 2.2560(2) 0.97088(3) 0.1035(5) Uani d . 1.00 S
S2 -0.1540(3) -1.2955(2) 0.52554(3) 0.1083(6) Uani d . 1.00 S
C1 0.6027(8) 2.0035(7) 0.95041(9) 0.0800(10) Uani d . 1.00 C
C2 0.7286(7) 1.8638(6) 0.92474(8) 0.0600(10) Uani d . 1.00 C
C3 0.5064(7) 1.6614(6) 0.90662(8) 0.0600(10) Uani d . 1.00 C
C4 0.6295(7) 1.5158(6) 0.88084(8) 0.0570(10) Uani d . 1.00 C
C5 0.4066(7) 1.3171(6) 0.86228(8) 0.0560(10) Uani d . 1.00 C
C6 0.5284(7) 1.1691(6) 0.83675(8) 0.0550(10) Uani d . 1.00 C
C7 0.3041(7) 0.9706(6) 0.81806(8) 0.0550(10) Uani d . 1.00 C
C8 0.4253(7) 0.8217(6) 0.79258(8) 0.0540(10) Uani d . 1.00 C
C9 0.2010(7) 0.6247(6) 0.77388(8) 0.0540(10) Uani d . 1.00 C
C10 0.3220(7) 0.4740(6) 0.74841(8) 0.0540(10) Uani d . 1.00 C
C11 0.0974(7) 0.2777(6) 0.72965(8) 0.0550(10) Uani d . 1.00 C
C12 0.2190(7) 0.1271(6) 0.70433(8) 0.0550(10) Uani d . 1.00 C
C13 -0.0056(7) -0.0686(6) 0.68545(8) 0.0560(10) Uani d . 1.00 C
C14 0.1169(7) -0.2198(6) 0.66022(8) 0.0560(10) Uani d . 1.00 C
C15 -0.1073(7) -0.4145(6) 0.64112(8) 0.0580(10) Uani d . 1.00 C
C16 0.0160(7) -0.5647(6) 0.61593(8) 0.0590(10) Uani d . 1.00 C
C17 -0.2083(7) -0.7566(6) 0.59632(8) 0.0630(10) Uani d . 1.00 C
C18 -0.0813(8) -0.9109(6) 0.57211(8) 0.0650(10) Uani d . 1.00 C
C19 -0.3063(8) -1.0945(7) 0.55166(9) 0.085(2) Uani d . 1.00 C
H1 0.5186 1.8922 0.96605 0.093 Uiso c R 1.00 H
H2 0.4570 2.0688 0.93977 0.093 Uiso c R 1.00 H
H3 0.8191 1.9748 0.90939 0.070 Uiso c R 1.00 H
H4 0.8684 1.7912 0.93531 0.070 Uiso c R 1.00 H
H5 0.4142 1.5525 0.92211 0.070 Uiso c R 1.00 H
H6 0.3682 1.7349 0.89590 0.071 Uiso c R 1.00 H
H7 0.7249 1.6253 0.86561 0.067 Uiso c R 1.00 H
H8 0.7649 1.4397 0.89162 0.067 Uiso c R 1.00 H
H9 0.3115 1.2076 0.87754 0.066 Uiso c R 1.00 H
H10 0.2710 1.3935 0.85157 0.066 Uiso c R 1.00 H
H11 0.6241 1.2785 0.82151 0.064 Uiso c R 1.00 H
H12 0.6634 1.0920 0.84744 0.064 Uiso c R 1.00 H
H13 0.2078 0.8619 0.83335 0.064 Uiso c R 1.00 H
H14 0.1697 1.0480 0.80731 0.065 Uiso c R 1.00 H
H15 0.5223 0.9304 0.77736 0.063 Uiso c R 1.00 H
H16 0.5591 0.7438 0.80335 0.063 Uiso c R 1.00 H
H17 0.1031 0.5166 0.78912 0.064 Uiso c R 1.00 H
H18 0.0680 0.7027 0.76298 0.064 Uiso c R 1.00 H
H19 0.4202 0.5819 0.73317 0.064 Uiso c R 1.00 H
H20 0.4547 0.3955 0.75930 0.064 Uiso c R 1.00 H
H21 -0.0008 0.1695 0.74486 0.065 Uiso c R 1.00 H
H22 -0.0355 0.3560 0.71876 0.065 Uiso c R 1.00 H
H23 0.3186 0.2356 0.68924 0.065 Uiso c R 1.00 H
H24 0.3506 0.0479 0.71526 0.065 Uiso c R 1.00 H
H25 -0.1060 -0.1765 0.70055 0.066 Uiso c R 1.00 H
H26 -0.1366 0.0107 0.67441 0.066 Uiso c R 1.00 H
H27 0.2182 -0.1118 0.64520 0.067 Uiso c R 1.00 H
H28 0.2470 -0.2999 0.67128 0.067 Uiso c R 1.00 H
H29 -0.2092 -0.5225 0.65611 0.069 Uiso c R 1.00 H
H30 -0.2371 -0.3347 0.62995 0.069 Uiso c R 1.00 H
H31 0.1206 -0.4563 0.60116 0.069 Uiso c R 1.00 H
H32 0.1434 -0.6466 0.62714 0.069 Uiso c R 1.00 H
H33 -0.3173 -0.8620 0.61108 0.074 Uiso c R 1.00 H
H34 -0.3320 -0.6749 0.58444 0.074 Uiso c R 1.00 H
H35 0.0339 -0.8053 0.55786 0.078 Uiso c R 1.00 H
H36 0.0361 -0.9984 0.58397 0.078 Uiso c R 1.00 H
H37 -0.4155 -1.0063 0.53877 0.099 Uiso c R 1.00 H
H38 -0.4289 -1.1923 0.56608 0.099 Uiso c R 1.00 H
H2s -0.193(8) -1.192(7) 0.5040(10) 0.1299 Uiso d T 1.00 H
H1s 0.896(9) 2.156(7) 0.9860(10) 0.1241 Uiso d T 1.00 H
loop_
_atom_type_symbol
_atom_type_description
_atom_type_scat_dispersion_real
_atom_type_scat_dispersion_imag
_atom_type_scat_source
C C 0.018 0.009
;
International Tables for Crystallography
(1992, Vol. C, Tables 4.2.6.8 and 6.1.1.4)
;
H H 0.000 0.000
;
International Tables for Crystallography
(1992, Vol. C, Table 6.1.1.4)
;
S S 0.333 0.557
;
International Tables for Crystallography
(1992, Vol. C, Tables 4.2.6.8 and 6.1.1.4)
;
loop_
_geom_angle_atom_site_label_1
_geom_angle_atom_site_label_2
_geom_angle_atom_site_label_3
_geom_angle_site_symmetry_1
_geom_angle_site_symmetry_2
_geom_angle_site_symmetry_3
_geom_angle
_geom_angle_publ_flag
S1 C1 C2 . . . 114.6(3) no
C1 C2 C3 . . . 113.2(3) no
C2 C3 C4 . . . 114.1(3) no
C3 C4 C5 . . . 114.1(3) no
C4 C5 C6 . . . 114.3(3) no
C5 C6 C7 . . . 114.2(3) no
C6 C7 C8 . . . 114.4(3) no
C7 C8 C9 . . . 114.2(3) no
C8 C9 C10 . . . 114.4(3) no
C9 C10 C11 . . . 114.3(3) no
C10 C11 C12 . . . 114.2(3) no
C11 C12 C13 . . . 114.2(3) no
C12 C13 C14 . . . 114.1(3) no
C13 C14 C15 . . . 114.3(3) no
C14 C15 C16 . . . 114.1(3) no
C15 C16 C17 . . . 114.2(3) no
C16 C17 C18 . . . 113.6(3) no
C17 C18 C19 . . . 113.4(3) no
S2 C19 C18 . . . 113.1(3) no
C1 S1 H1s . . . 90(3) no
C19 S2 H2s . . . 91(2) no
S1 C1 H1 . . . 109.5 no
C2 C1 H1 . . . 108.5 no
S1 C1 H2 . . . 107.6 no
C2 C1 H2 . . . 107.1 no
H1 C1 H2 . . . 109.4 no
C1 C2 H3 . . . 109.1 no
C3 C2 H3 . . . 108.9 no
C1 C2 H4 . . . 107.7 no
C3 C2 H4 . . . 108.4 no
H3 C2 H4 . . . 109.5 no
C2 C3 H5 . . . 108.6 no
C4 C3 H5 . . . 109.0 no
C2 C3 H6 . . . 108.1 no
C4 C3 H6 . . . 107.5 no
H5 C3 H6 . . . 109.5 no
C3 C4 H7 . . . 108.9 no
C5 C4 H7 . . . 108.6 no
C3 C4 H8 . . . 107.5 no
C5 C4 H8 . . . 108.2 no
H7 C4 H8 . . . 109.5 no
C4 C5 H9 . . . 108.5 no
C6 C5 H9 . . . 108.3 no
C4 C5 H10 . . . 108.1 no
C6 C5 H10 . . . 108.1 no
H9 C5 H10 . . . 109.5 no
C5 C6 H11 . . . 108.4 no
C7 C6 H11 . . . 108.5 no
C5 C6 H12 . . . 108.2 no
C7 C6 H12 . . . 108.0 no
H11 C6 H12 . . . 109.5 no
C6 C7 H13 . . . 108.4 no
C8 C7 H13 . . . 108.5 no
C6 C7 H14 . . . 108.0 no
C8 C7 H14 . . . 108.1 no
H13 C7 H14 . . . 109.5 no
C7 C8 H15 . . . 108.4 no
C9 C8 H15 . . . 108.4 no
C7 C8 H16 . . . 108.1 no
C9 C8 H16 . . . 108.1 no
H15 C8 H16 . . . 109.5 no
C8 C9 H17 . . . 108.4 no
C10 C9 H17 . . . 108.5 no
C8 C9 H18 . . . 108.1 no
C10 C9 H18 . . . 107.9 no
H17 C9 H18 . . . 109.5 no
C9 C10 H19 . . . 108.5 no
C11 C10 H19 . . . 108.3 no
C9 C10 H20 . . . 108.0 no
C11 C10 H20 . . . 108.1 no
H19 C10 H20 . . . 109.5 no
C10 C11 H21 . . . 108.4 no
C12 C11 H21 . . . 108.3 no
C10 C11 H22 . . . 108.2 no
C12 C11 H22 . . . 108.2 no
H21 C11 H22 . . . 109.5 no
C11 C12 H23 . . . 108.3 no
C13 C12 H23 . . . 108.6 no
C11 C12 H24 . . . 108.2 no
C13 C12 H24 . . . 108.0 no
H23 C12 H24 . . . 109.5 no
C12 C13 H25 . . . 108.6 no
C14 C13 H25 . . . 108.4 no
C12 C13 H26 . . . 108.0 no
C14 C13 H26 . . . 108.1 no
H25 C13 H26 . . . 109.5 no
C13 C14 H27 . . . 108.4 no
C15 C14 H27 . . . 108.5 no
C13 C14 H28 . . . 108.1 no
C15 C14 H28 . . . 108.0 no
H27 C14 H28 . . . 109.5 no
C14 C15 H29 . . . 108.6 no
C16 C15 H29 . . . 108.7 no
C14 C15 H30 . . . 108.1 no
C16 C15 H30 . . . 107.8 no
H29 C15 H30 . . . 109.5 no
C15 C16 H31 . . . 108.6 no
C17 C16 H31 . . . 108.4 no
C15 C16 H32 . . . 107.8 no
C17 C16 H32 . . . 108.2 no
H31 C16 H32 . . . 109.5 no
C16 C17 H33 . . . 108.6 no
C18 C17 H33 . . . 108.7 no
C16 C17 H34 . . . 108.5 no
C18 C17 H34 . . . 107.9 no
H33 C17 H34 . . . 109.5 no
C17 C18 H35 . . . 108.8 no
C19 C18 H35 . . . 108.5 no
C17 C18 H36 . . . 108.2 no
C19 C18 H36 . . . 108.4 no
H35 C18 H36 . . . 109.4 no
S2 C19 H37 . . . 109.7 no
C18 C19 H37 . . . 108.3 no
S2 C19 H38 . . . 108.2 no
C18 C19 H38 . . . 108.1 no
H37 C19 H38 . . . 109.5 no
S1 H1s S1 1_444 1_444 2_696 80(2) no
S2 H2s S2 . . 2_526 72.7(19) no
loop_
_geom_bond_atom_site_label_1
_geom_bond_atom_site_label_2
_geom_bond_distance
_geom_bond_publ_flag
S1 C1 1.798(3) no
S2 C19 1.796(3) no
C1 C2 1.498(4) no
C2 C3 1.517(4) no
C3 C4 1.514(4) no
C4 C5 1.515(4) no
C5 C6 1.511(4) no
C6 C7 1.520(4) no
C7 C8 1.512(4) no
C8 C9 1.516(4) no
C9 C10 1.517(4) no
C10 C11 1.516(4) no
C11 C12 1.514(4) no
C12 C13 1.516(4) no
C13 C14 1.516(4) no
C14 C15 1.516(4) no
C15 C16 1.513(4) no
C16 C17 1.517(4) no
C17 C18 1.511(4) no
C18 C19 1.512(4) no
S1 H1s 0.90(3) no
S2 H2s 1.10(4) no
C1 H1 0.95 no
C1 H2 0.95 no
C2 H3 0.95 no
C2 H4 0.95 no
C3 H5 0.95 no
C3 H6 0.95 no
C4 H7 0.95 no
C4 H8 0.95 no
C5 H9 0.95 no
C5 H10 0.95 no
C6 H11 0.95 no
C6 H12 0.95 no
C7 H13 0.95 no
C7 H14 0.95 no
C8 H15 0.95 no
C8 H16 0.95 no
C9 H17 0.95 no
C9 H18 0.95 no
C10 H19 0.95 no
C10 H20 0.95 no
C11 H21 0.95 no
C11 H22 0.95 no
C12 H23 0.95 no
C12 H24 0.95 no
C13 H25 0.95 no
C13 H26 0.95 no
C14 H27 0.95 no
C14 H28 0.95 no
C15 H29 0.95 no
C15 H30 0.95 no
C16 H31 0.95 no
C16 H32 0.95 no
C17 H33 0.95 no
C17 H34 0.95 no
C18 H35 0.95 no
C18 H36 0.95 no
C19 H37 0.95 no
C19 H38 0.95 no
loop_
_geom_contact_atom_site_label_1
_geom_contact_atom_site_label_2
_geom_contact_distance
_geom_contact_site_symmetry_1
_geom_contact_site_symmetry_2
_geom_contact_publ_flag
S1 S1 3.5474(18) 1_444 2_696 no
S2 S2 3.6011(19) . 2_526 no
loop_
_geom_torsion_atom_site_label_1
_geom_torsion_atom_site_label_2
_geom_torsion_atom_site_label_3
_geom_torsion_atom_site_label_4
_geom_torsion
_geom_torsion_publ_flag
S1 C1 C2 C3 -176.7(2) no
C1 C2 C3 C4 -179.3(3) no
C2 C3 C4 C5 -178.8(3) no
C3 C4 C5 C6 -179.4(3) no
C4 C5 C6 C7 -179.7(3) no
C5 C6 C7 C8 -179.8(3) no
C6 C7 C8 C9 -179.7(3) no
C7 C8 C9 C10 -179.7(3) no
C8 C9 C10 C11 -179.8(3) no
C9 C10 C11 C12 -179.8(3) no
C10 C11 C12 C13 -179.8(3) no
C11 C12 C13 C14 -179.7(3) no
C12 C13 C14 C15 -179.6(3) no
C13 C14 C15 C16 179.9(3) no
C14 C15 C16 C17 -178.9(3) no
C15 C16 C17 C18 -178.0(3) no
C16 C17 C18 C19 -177.6(3) no
C17 C18 C19 S2 -174.8(2) no
C2 C1 S1 H1s -90(3) no
C18 C19 S2 H2s -104(2) no
loop_
_cod_related_entry_id
_cod_related_entry_database
_cod_related_entry_code
1 ChemSpider 21130404
2 PubChem 57291320
