#------------------------------------------------------------------------------ #$Date: 2011-09-10 06:16:28 +0300 (Sat, 10 Sep 2011) $ #$Revision: 25271 $ #$URL: file:///home/coder/svn-repositories/cod/cif/2/2221988.cif $ #------------------------------------------------------------------------------ # # This file is available in the Crystallography Open Database (COD), # http://www.crystallography.net/. The original data for this entry # were provided by IUCr Journals, http://journals.iucr.org/. # # The file may be used within the scientific community so long as # proper attribution is given to the journal article from which the # data were obtained. # data_2221988 loop_ _publ_author_name 'Eltayeb, Naser Eltaher' 'Teoh, Siang Guan' 'Fun, Hoong-Kun' 'Jebas, Samuel Robinson' 'Adnan, Rohana' _publ_section_title ; 3-[1-(3-Hydroxybenzyl)-1H-benzimidazol-2-yl]phenol ; _journal_coeditor_code CV2563 _journal_issue 6 _journal_name_full 'Acta Crystallographica Section E' _journal_page_first o1374 _journal_page_last o1375 _journal_volume 65 _journal_year 2009 _chemical_formula_iupac 'C20 H16 N2 O2' _chemical_formula_moiety 'C20 H16 N2 O2' _chemical_formula_sum 'C20 H16 N2 O2' _chemical_formula_weight 316.35 _chemical_name_common ; 3-[1-(3-Hydroxybenzyl)-1H-benzimidazol-2-yl]phenol ; _chemical_name_systematic ; 3-[1-(3-Hydroxybenzyl)-1H-benzimidazol-2-yl]phenol ; _space_group_IT_number 14 _symmetry_cell_setting monoclinic _symmetry_space_group_name_Hall '-P 2yn' _symmetry_space_group_name_H-M 'P 1 21/n 1' _atom_sites_solution_hydrogens geom _atom_sites_solution_primary direct _atom_sites_solution_secondary difmap _audit_creation_method SHELXL97 _cell_angle_alpha 90.00 _cell_angle_beta 96.9480(10) _cell_angle_gamma 90.00 _cell_formula_units_Z 4 _cell_length_a 10.5128(2) _cell_length_b 12.1096(2) _cell_length_c 12.5235(2) _cell_measurement_reflns_used 8327 _cell_measurement_temperature 100 _cell_measurement_theta_max 37.16 _cell_measurement_theta_min 2.39 _cell_volume 1582.61(5) _computing_cell_refinement 'SAINT (Bruker, 2005)' _computing_data_collection 'APEX2 (Bruker, 2005)' _computing_data_reduction 'SAINT (Bruker, 2005)' _computing_molecular_graphics 'SHELXTL (Sheldrick, 2008)' _computing_publication_material ; SHELXTL (Sheldrick, 2008) and PLATON (Spek, 2009) ; _computing_structure_refinement 'SHELXTL (Sheldrick, 2008)' _computing_structure_solution 'SHELXTL (Sheldrick, 2008)' _diffrn_ambient_temperature 100 _diffrn_measured_fraction_theta_full 0.989 _diffrn_measured_fraction_theta_max 0.989 _diffrn_measurement_device_type 'Bruker SMART APEXII CCD area-detector' _diffrn_measurement_method '\f and \w' _diffrn_radiation_monochromator graphite _diffrn_radiation_source 'fine-focus sealed tube' _diffrn_radiation_type MoK\a _diffrn_radiation_wavelength 0.71073 _diffrn_reflns_av_R_equivalents 0.0401 _diffrn_reflns_av_sigmaI/netI 0.0361 _diffrn_reflns_limit_h_max 17 _diffrn_reflns_limit_h_min -14 _diffrn_reflns_limit_k_max 20 _diffrn_reflns_limit_k_min -20 _diffrn_reflns_limit_l_max 20 _diffrn_reflns_limit_l_min -19 _diffrn_reflns_number 34106 _diffrn_reflns_theta_full 36.00 _diffrn_reflns_theta_max 36.00 _diffrn_reflns_theta_min 2.35 _diffrn_standards_number 0 _exptl_absorpt_coefficient_mu 0.087 _exptl_absorpt_correction_T_max 0.9873 _exptl_absorpt_correction_T_min 0.9536 _exptl_absorpt_correction_type multi-scan _exptl_absorpt_process_details '(SADABS; Bruker, 2005)' _exptl_crystal_colour colourless _exptl_crystal_density_diffrn 1.328 _exptl_crystal_density_method 'not measured' _exptl_crystal_description plate _exptl_crystal_F_000 664 _exptl_crystal_size_max 0.55 _exptl_crystal_size_mid 0.34 _exptl_crystal_size_min 0.15 _refine_diff_density_max 0.505 _refine_diff_density_min -0.292 _refine_ls_extinction_method none _refine_ls_goodness_of_fit_ref 1.054 _refine_ls_hydrogen_treatment mixed _refine_ls_matrix_type full _refine_ls_number_parameters 225 _refine_ls_number_reflns 7426 _refine_ls_number_restraints 0 _refine_ls_restrained_S_all 1.054 _refine_ls_R_factor_all 0.0611 _refine_ls_R_factor_gt 0.0482 _refine_ls_shift/su_max 0.000 _refine_ls_shift/su_mean 0.000 _refine_ls_structure_factor_coef Fsqd _refine_ls_weighting_details 'calc w = 1/[\s^2^(Fo^2^)+(0.0723P)^2^+0.2344P] where P=(Fo^2^+2Fc^2^)/3' _refine_ls_weighting_scheme calc _refine_ls_wR_factor_gt 0.1275 _refine_ls_wR_factor_ref 0.1360 _reflns_number_gt 6004 _reflns_number_total 7426 _reflns_threshold_expression I>2\s(I) _[local]_cod_data_source_file cv2563.cif _[local]_cod_data_source_block I _[local]_cod_cif_authors_sg_H-M 'P 21/n' _cod_database_code 2221988 loop_ _symmetry_equiv_pos_as_xyz 'x, y, z' '-x+1/2, y+1/2, -z+1/2' '-x, -y, -z' 'x-1/2, -y-1/2, z-1/2' loop_ _atom_site_type_symbol _atom_site_label _atom_site_fract_x _atom_site_fract_y _atom_site_fract_z _atom_site_U_iso_or_equiv _atom_site_adp_type _atom_site_calc_flag _atom_site_refinement_flags _atom_site_occupancy O O1 0.60369(7) 0.60548(5) 0.04595(5) 0.01932(13) Uani d . 1 O O2 0.21201(7) 0.70928(6) 0.49193(6) 0.02850(16) Uani d . 1 N N1 0.36876(7) 0.35014(5) 0.31082(5) 0.01366(12) Uani d . 1 N N2 0.55084(7) 0.30903(6) 0.41524(5) 0.01468(12) Uani d . 1 C C1 0.34113(8) 0.26119(6) 0.37376(6) 0.01385(13) Uani d . 1 C C2 0.22644(8) 0.20556(7) 0.38301(6) 0.01625(14) Uani d . 1 H H2A 0.1502 0.2247 0.3415 0.019 Uiso calc R 1 C C3 0.23254(9) 0.12006(7) 0.45759(7) 0.01787(15) Uani d . 1 H H3A 0.1581 0.0820 0.4676 0.021 Uiso calc R 1 C C4 0.34872(9) 0.08978(7) 0.51829(7) 0.01903(16) Uani d . 1 H H4A 0.3497 0.0308 0.5659 0.023 Uiso calc R 1 C C5 0.46206(9) 0.14602(7) 0.50872(7) 0.01765(15) Uani d . 1 H H5A 0.5388 0.1255 0.5486 0.021 Uiso calc R 1 C C6 0.45615(8) 0.23468(6) 0.43671(6) 0.01408(13) Uani d . 1 C C7 0.49493(8) 0.37658(6) 0.34028(6) 0.01328(13) Uani d . 1 C C8 0.55758(8) 0.47449(6) 0.29966(6) 0.01346(13) Uani d . 1 C C9 0.55681(8) 0.49315(6) 0.18938(6) 0.01442(13) Uani d . 1 H H9A 0.5214 0.4411 0.1398 0.017 Uiso calc R 1 C C10 0.60956(8) 0.59058(6) 0.15413(6) 0.01466(14) Uani d . 1 C C11 0.66423(8) 0.66833(7) 0.22849(6) 0.01679(15) Uani d . 1 H H11A 0.6988 0.7333 0.2049 0.020 Uiso calc R 1 C C12 0.66666(9) 0.64783(7) 0.33810(7) 0.01769(15) Uani d . 1 H H12A 0.7041 0.6990 0.3876 0.021 Uiso calc R 1 C C13 0.61356(8) 0.55155(7) 0.37433(6) 0.01600(14) Uani d . 1 H H13A 0.6153 0.5385 0.4477 0.019 Uiso calc R 1 C C14 0.27189(8) 0.40916(7) 0.23858(6) 0.01493(14) Uani d . 1 H H14A 0.2199 0.3560 0.1948 0.018 Uiso calc R 1 H H14B 0.3144 0.4556 0.1907 0.018 Uiso calc R 1 C C15 0.18581(8) 0.47993(7) 0.29866(6) 0.01546(14) Uani d . 1 C C16 0.05416(9) 0.46392(8) 0.28541(7) 0.02214(17) Uani d . 1 H H16A 0.0182 0.4078 0.2409 0.027 Uiso calc R 1 C C17 -0.02425(10) 0.53232(10) 0.33909(9) 0.0298(2) Uani d . 1 H H17A -0.1126 0.5226 0.3289 0.036 Uiso calc R 1 C C18 0.02893(10) 0.61473(9) 0.40753(8) 0.0276(2) Uani d . 1 H H18A -0.0235 0.6601 0.4432 0.033 Uiso calc R 1 C C19 0.16150(9) 0.62907(8) 0.42254(7) 0.02011(16) Uani d . 1 C C20 0.23951(8) 0.56315(7) 0.36681(6) 0.01647(14) Uani d . 1 H H20A 0.3276 0.5746 0.3750 0.020 Uiso calc R 1 H H1O1 0.6430(17) 0.6716(15) 0.0307(14) 0.053(5) Uiso d . 1 H H1O2 0.3026(18) 0.6952(15) 0.5216(14) 0.055(5) Uiso d . 1 loop_ _atom_site_aniso_label _atom_site_aniso_U_11 _atom_site_aniso_U_22 _atom_site_aniso_U_33 _atom_site_aniso_U_12 _atom_site_aniso_U_13 _atom_site_aniso_U_23 O1 0.0266(3) 0.0181(3) 0.0133(2) -0.0054(2) 0.0028(2) 0.00132(19) O2 0.0206(3) 0.0285(3) 0.0336(4) 0.0103(3) -0.0083(3) -0.0167(3) N1 0.0134(3) 0.0145(3) 0.0127(3) 0.0004(2) 0.0002(2) 0.0011(2) N2 0.0139(3) 0.0155(3) 0.0144(3) 0.0006(2) 0.0007(2) 0.0009(2) C1 0.0148(3) 0.0135(3) 0.0131(3) -0.0001(2) 0.0012(3) -0.0002(2) C2 0.0151(3) 0.0170(3) 0.0162(3) -0.0022(3) 0.0003(3) -0.0013(2) C3 0.0204(4) 0.0161(3) 0.0173(3) -0.0041(3) 0.0029(3) -0.0011(2) C4 0.0242(4) 0.0149(3) 0.0181(3) -0.0023(3) 0.0027(3) 0.0015(3) C5 0.0197(4) 0.0158(3) 0.0169(3) 0.0008(3) 0.0001(3) 0.0024(2) C6 0.0147(3) 0.0136(3) 0.0137(3) 0.0002(2) 0.0008(3) -0.0003(2) C7 0.0131(3) 0.0143(3) 0.0124(3) 0.0001(2) 0.0013(2) -0.0007(2) C8 0.0122(3) 0.0142(3) 0.0140(3) 0.0001(2) 0.0018(2) -0.0003(2) C9 0.0159(3) 0.0142(3) 0.0131(3) -0.0019(2) 0.0018(3) -0.0008(2) C10 0.0154(3) 0.0151(3) 0.0138(3) -0.0006(3) 0.0026(3) -0.0001(2) C11 0.0183(4) 0.0148(3) 0.0173(3) -0.0026(3) 0.0023(3) -0.0013(2) C12 0.0186(4) 0.0180(3) 0.0165(3) -0.0035(3) 0.0021(3) -0.0036(2) C13 0.0161(4) 0.0180(3) 0.0138(3) -0.0011(3) 0.0016(3) -0.0019(2) C14 0.0145(3) 0.0177(3) 0.0120(3) 0.0020(3) -0.0010(3) 0.0002(2) C15 0.0148(3) 0.0176(3) 0.0136(3) 0.0022(3) 0.0000(3) 0.0002(2) C16 0.0145(4) 0.0283(4) 0.0229(4) 0.0005(3) -0.0007(3) -0.0069(3) C17 0.0133(4) 0.0409(6) 0.0349(5) 0.0020(4) 0.0017(4) -0.0144(4) C18 0.0162(4) 0.0369(5) 0.0292(5) 0.0071(4) 0.0002(3) -0.0126(4) C19 0.0174(4) 0.0217(4) 0.0200(4) 0.0057(3) -0.0028(3) -0.0053(3) C20 0.0137(3) 0.0178(3) 0.0172(3) 0.0026(3) -0.0006(3) -0.0017(3) loop_ _atom_type_symbol _atom_type_description _atom_type_scat_dispersion_real _atom_type_scat_dispersion_imag _atom_type_scat_source C C 0.0033 0.0016 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' H H 0.0000 0.0000 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' N N 0.0061 0.0033 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' O O 0.0106 0.0060 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' loop_ _geom_angle_atom_site_label_1 _geom_angle_atom_site_label_2 _geom_angle_atom_site_label_3 _geom_angle C10 O1 H1O1 110.5(11) C19 O2 H1O2 113.3(10) C7 N1 C1 106.91(6) C7 N1 C14 129.07(7) C1 N1 C14 123.56(7) C7 N2 C6 105.62(7) N1 C1 C2 131.58(8) N1 C1 C6 105.82(7) C2 C1 C6 122.56(7) C3 C2 C1 116.37(8) C3 C2 H2A 121.8 C1 C2 H2A 121.8 C2 C3 C4 121.56(8) C2 C3 H3A 119.2 C4 C3 H3A 119.2 C5 C4 C3 121.52(8) C5 C4 H4A 119.2 C3 C4 H4A 119.2 C4 C5 C6 117.39(8) C4 C5 H5A 121.3 C6 C5 H5A 121.3 N2 C6 C1 109.41(7) N2 C6 C5 130.08(8) C1 C6 C5 120.50(7) N2 C7 N1 112.19(7) N2 C7 C8 124.10(7) N1 C7 C8 123.52(7) C9 C8 C13 120.26(7) C9 C8 C7 121.37(7) C13 C8 C7 118.31(7) C10 C9 C8 119.55(7) C10 C9 H9A 120.2 C8 C9 H9A 120.2 O1 C10 C9 117.03(7) O1 C10 C11 122.64(7) C9 C10 C11 120.33(7) C12 C11 C10 119.59(7) C12 C11 H11A 120.2 C10 C11 H11A 120.2 C11 C12 C13 120.69(8) C11 C12 H12A 119.7 C13 C12 H12A 119.7 C12 C13 C8 119.56(7) C12 C13 H13A 120.2 C8 C13 H13A 120.2 N1 C14 C15 112.50(6) N1 C14 H14A 109.1 C15 C14 H14A 109.1 N1 C14 H14B 109.1 C15 C14 H14B 109.1 H14A C14 H14B 107.8 C16 C15 C20 119.87(7) C16 C15 C14 120.66(7) C20 C15 C14 119.46(7) C15 C16 C17 119.85(9) C15 C16 H16A 120.1 C17 C16 H16A 120.1 C18 C17 C16 120.42(9) C18 C17 H17A 119.8 C16 C17 H17A 119.8 C17 C18 C19 119.60(8) C17 C18 H18A 120.2 C19 C18 H18A 120.2 O2 C19 C20 121.29(8) O2 C19 C18 118.63(8) C20 C19 C18 120.08(8) C19 C20 C15 120.13(8) C19 C20 H20A 119.9 C15 C20 H20A 119.9 loop_ _geom_bond_atom_site_label_1 _geom_bond_atom_site_label_2 _geom_bond_distance O1 C10 1.3607(10) O1 H1O1 0.931(19) O2 C19 1.3671(11) O2 H1O2 0.994(19) N1 C7 1.3709(10) N1 C1 1.3861(10) N1 C14 1.4641(11) N2 C7 1.3275(10) N2 C6 1.3923(10) C1 C2 1.3981(11) C1 C6 1.3986(12) C2 C3 1.3906(11) C2 H2A 0.9300 C3 C4 1.4070(13) C3 H3A 0.9300 C4 C5 1.3901(12) C4 H4A 0.9300 C5 C6 1.3987(11) C5 H5A 0.9300 C7 C8 1.4763(10) C8 C9 1.3985(10) C8 C13 1.3995(11) C9 C10 1.3977(11) C9 H9A 0.9300 C10 C11 1.3980(11) C11 C12 1.3922(11) C11 H11A 0.9300 C12 C13 1.3922(11) C12 H12A 0.9300 C13 H13A 0.9300 C14 C15 1.5114(11) C14 H14A 0.9700 C14 H14B 0.9700 C15 C16 1.3874(13) C15 C20 1.3951(11) C16 C17 1.3970(13) C16 H16A 0.9300 C17 C18 1.3882(14) C17 H17A 0.9300 C18 C19 1.3944(14) C18 H18A 0.9300 C19 C20 1.3911(11) C20 H20A 0.9300 loop_ _geom_hbond_atom_site_label_D _geom_hbond_atom_site_label_H _geom_hbond_atom_site_label_A _geom_hbond_site_symmetry_A _geom_hbond_distance_DH _geom_hbond_distance_HA _geom_hbond_distance_DA _geom_hbond_angle_DHA O1 H1O1 O2 4_675 0.931(19) 1.712(19) 2.6406(9) 175.4(17) O2 H1O2 N2 3_666 0.994(19) 1.646(19) 2.6297(10) 169.7(16) C3 H3A O1 4_566 0.93 2.57 3.2987(10) 136.1 C9 H9A O1 3_665 0.93 2.59 3.4287(10) 149.9 C12 H12A Cg1 3_666 0.93 2.67 3.4521(9) 142 loop_ _geom_torsion_atom_site_label_1 _geom_torsion_atom_site_label_2 _geom_torsion_atom_site_label_3 _geom_torsion_atom_site_label_4 _geom_torsion C7 N1 C1 C2 175.17(8) C14 N1 C1 C2 2.30(12) C7 N1 C1 C6 -2.40(8) C14 N1 C1 C6 -175.27(6) N1 C1 C2 C3 -178.27(8) C6 C1 C2 C3 -1.05(11) C1 C2 C3 C4 -1.54(12) C2 C3 C4 C5 1.89(13) C3 C4 C5 C6 0.40(12) C7 N2 C6 C1 -1.16(8) C7 N2 C6 C5 180.00(8) N1 C1 C6 N2 2.23(8) C2 C1 C6 N2 -175.61(7) N1 C1 C6 C5 -178.80(7) C2 C1 C6 C5 3.37(11) C4 C5 C6 N2 175.81(8) C4 C5 C6 C1 -2.93(11) C6 N2 C7 N1 -0.41(8) C6 N2 C7 C8 174.77(7) C1 N1 C7 N2 1.81(8) C14 N1 C7 N2 174.16(7) C1 N1 C7 C8 -173.40(7) C14 N1 C7 C8 -1.05(11) N2 C7 C8 C9 130.08(8) N1 C7 C8 C9 -55.28(11) N2 C7 C8 C13 -52.67(10) N1 C7 C8 C13 121.97(8) C13 C8 C9 C10 -1.55(12) C7 C8 C9 C10 175.65(7) C8 C9 C10 O1 -178.61(7) C8 C9 C10 C11 0.81(12) O1 C10 C11 C12 179.82(8) C9 C10 C11 C12 0.44(13) C10 C11 C12 C13 -0.95(13) C11 C12 C13 C8 0.22(13) C9 C8 C13 C12 1.04(12) C7 C8 C13 C12 -176.24(8) C7 N1 C14 C15 -98.85(9) C1 N1 C14 C15 72.35(9) N1 C14 C15 C16 -121.88(9) N1 C14 C15 C20 59.08(10) C20 C15 C16 C17 0.98(14) C14 C15 C16 C17 -178.05(9) C15 C16 C17 C18 -1.43(17) C16 C17 C18 C19 0.02(18) C17 C18 C19 O2 -178.72(10) C17 C18 C19 C20 1.83(16) O2 C19 C20 C15 178.29(8) C18 C19 C20 C15 -2.28(14) C16 C15 C20 C19 0.86(13) C14 C15 C20 C19 179.91(8)