#------------------------------------------------------------------------------ #$Date: 2016-02-20 22:30:07 +0200 (Sat, 20 Feb 2016) $ #$Revision: 176789 $ #$URL: file:///home/coder/svn-repositories/cod/cif/2/22/19/2221989.cif $ #------------------------------------------------------------------------------ # # This file is available in the Crystallography Open Database (COD), # http://www.crystallography.net/. The original data for this entry # were provided by IUCr Journals, http://journals.iucr.org/. # # The file may be used within the scientific community so long as # proper attribution is given to the journal article from which the # data were obtained. # data_2221989 loop_ _publ_author_name 'Yu, Yan-Hong' 'Qian, Kun' _publ_section_title ; 1,3-Dihydroxy-2-(hydroxymethyl)propan-2-aminium 2,2-dichloroacetate ; _journal_coeditor_code DN2442 _journal_issue 6 _journal_name_full 'Acta Crystallographica Section E' _journal_page_first o1278 _journal_paper_doi 10.1107/S1600536809016626 _journal_volume 65 _journal_year 2009 _chemical_formula_iupac 'C4 H12 N O3 + , C2 H Cl2 O2 -' _chemical_formula_moiety 'C4 H12 N O3 + , C2 H Cl2 O2 -' _chemical_formula_sum 'C6 H13 Cl2 N O5' _chemical_formula_weight 250.07 _chemical_name_systematic ; 1,3-Dihydroxy-2-(hydroxymethyl)propan-2-aminium 2,2-dichloroacetate ; _space_group_IT_number 4 _symmetry_cell_setting monoclinic _symmetry_space_group_name_Hall 'P 2yb' _symmetry_space_group_name_H-M 'P 1 21 1' _atom_sites_solution_hydrogens geom _atom_sites_solution_primary direct _atom_sites_solution_secondary difmap _audit_creation_method SHELXL97 _cell_angle_alpha 90.00 _cell_angle_beta 97.03(3) _cell_angle_gamma 90.00 _cell_formula_units_Z 2 _cell_length_a 8.6231(17) _cell_length_b 6.1376(12) _cell_length_c 9.898(2) _cell_measurement_reflns_used 735 _cell_measurement_temperature 293(2) _cell_measurement_theta_max 27.4605 _cell_measurement_theta_min 2.7997 _cell_volume 519.91(18) _computing_cell_refinement 'CrystalClear (Rigaku, 2005)' _computing_data_collection 'CrystalClear (Rigaku, 2005)' _computing_data_reduction 'CrystalClear (Rigaku, 2005)' _computing_molecular_graphics ; ORTEPIII (Burnett & Johnson, 1996), ORTEP-3 for Windows (Farrugia, 1997) and PLATON (Spek, 2009) ; _computing_publication_material 'SHELXL97 (Sheldrick, 2008)' _computing_structure_refinement 'SHELXL97 (Sheldrick, 2008)' _computing_structure_solution 'SHELXS97 (Sheldrick, 2008)' _diffrn_ambient_temperature 293(2) _diffrn_detector_area_resol_mean 13.6612 _diffrn_measured_fraction_theta_full 0.997 _diffrn_measured_fraction_theta_max 0.997 _diffrn_measurement_device_type 'Rigaku SCXmini' _diffrn_measurement_method \w _diffrn_radiation_monochromator graphite _diffrn_radiation_source 'fine-focus sealed tube' _diffrn_radiation_type MoK\a _diffrn_radiation_wavelength 0.71073 _diffrn_reflns_av_R_equivalents 0.0253 _diffrn_reflns_av_sigmaI/netI 0.0315 _diffrn_reflns_limit_h_max 10 _diffrn_reflns_limit_h_min -10 _diffrn_reflns_limit_k_max 7 _diffrn_reflns_limit_k_min -7 _diffrn_reflns_limit_l_max 12 _diffrn_reflns_limit_l_min -12 _diffrn_reflns_number 4914 _diffrn_reflns_theta_full 25.99 _diffrn_reflns_theta_max 25.99 _diffrn_reflns_theta_min 3.34 _diffrn_standards_number 0 _exptl_absorpt_coefficient_mu 0.621 _exptl_absorpt_correction_T_max 0.9292 _exptl_absorpt_correction_T_min 0.8754 _exptl_absorpt_correction_type multi-scan _exptl_absorpt_process_details '(CrystalClear; Rigaku, 2005)' _exptl_crystal_colour colourless _exptl_crystal_density_diffrn 1.597 _exptl_crystal_density_method 'not measured' _exptl_crystal_description prism _exptl_crystal_F_000 260 _exptl_crystal_size_max 0.22 _exptl_crystal_size_mid 0.18 _exptl_crystal_size_min 0.12 _refine_diff_density_max 0.234 _refine_diff_density_min -0.246 _refine_ls_abs_structure_details 'Flack (1983), 920 Friedel pairs' _refine_ls_abs_structure_Flack 0.67(6) _refine_ls_extinction_method none _refine_ls_goodness_of_fit_ref 1.095 _refine_ls_hydrogen_treatment constr _refine_ls_matrix_type full _refine_ls_number_parameters 130 _refine_ls_number_reflns 2044 _refine_ls_number_restraints 3 _refine_ls_restrained_S_all 1.094 _refine_ls_R_factor_all 0.0332 _refine_ls_R_factor_gt 0.0309 _refine_ls_shift/su_max 0.000 _refine_ls_shift/su_mean 0.000 _refine_ls_structure_factor_coef Fsqd _refine_ls_weighting_details 'calc w = 1/[\s^2^(Fo^2^)+(0.0218P)^2^+0.1660P] where P=(Fo^2^+2Fc^2^)/3' _refine_ls_weighting_scheme calc _refine_ls_wR_factor_gt 0.0682 _refine_ls_wR_factor_ref 0.0693 _reflns_number_gt 1951 _reflns_number_total 2044 _reflns_threshold_expression I>2\s(I) _cod_data_source_file dn2442.cif _cod_data_source_block I _cod_original_cell_volume 519.92(18) _cod_original_sg_symbol_H-M 'P 21' _cod_database_code 2221989 _cod_database_fobs_code 2221989 loop_ _symmetry_equiv_pos_as_xyz 'x, y, z' '-x, y+1/2, -z' loop_ _atom_site_type_symbol _atom_site_label _atom_site_fract_x _atom_site_fract_y _atom_site_fract_z _atom_site_U_iso_or_equiv _atom_site_adp_type _atom_site_calc_flag _atom_site_refinement_flags _atom_site_occupancy _atom_site_disorder_assembly _atom_site_disorder_group Cl Cl1 0.86491(9) 0.39154(15) 0.00483(7) 0.0630(2) Uani d . 1 . . Cl Cl2 0.70850(10) 0.03942(11) 0.13016(8) 0.0598(2) Uani d . 1 . . C C1 0.6938(3) 0.3135(4) 0.0737(2) 0.0342(5) Uani d . 1 . . H H1 0.6046 0.3263 0.0026 0.041 Uiso calc R 1 . . C C2 0.6675(2) 0.4656(4) 0.1919(2) 0.0282(5) Uani d . 1 . . C C3 0.2265(2) 0.2569(3) 0.3756(2) 0.0215(4) Uani d . 1 . . C C4 0.3748(2) 0.1471(3) 0.3394(2) 0.0248(4) Uani d . 1 . . H H4A 0.3540 0.0827 0.2496 0.030 Uiso calc R 1 . . H H4B 0.4558 0.2562 0.3365 0.030 Uiso calc R 1 . . C C5 0.0883(2) 0.0986(3) 0.3577(2) 0.0249(4) Uani d . 1 . . H H5A 0.0543 0.0801 0.2613 0.030 Uiso calc R 1 . . H H5B 0.1226 -0.0423 0.3944 0.030 Uiso calc R 1 . . C C6 0.1911(2) 0.4607(3) 0.2892(2) 0.0270(4) Uani d . 1 . . H H6A 0.1841 0.4215 0.1937 0.032 Uiso calc R 1 . . H H6B 0.0905 0.5188 0.3058 0.032 Uiso calc R 1 . . N N1 0.25465(19) 0.3243(3) 0.52217(16) 0.0221(3) Uani d . 1 . . H H1A 0.3470 0.3903 0.5382 0.033 Uiso calc R 1 . . H H1B 0.2540 0.2070 0.5750 0.033 Uiso calc R 1 . . H H1C 0.1797 0.4156 0.5403 0.033 Uiso calc R 1 . . O O1 0.54454(19) 0.5709(3) 0.17435(18) 0.0444(4) Uani d . 1 . . O O2 0.76863(19) 0.4708(3) 0.29336(16) 0.0403(4) Uani d . 1 . . O O3 0.42905(16) -0.0160(2) 0.43407(15) 0.0306(4) Uani d D 1 . . H H3 0.3857 -0.1281 0.4071 0.046 Uiso d RD 1 . . O O4 0.30642(17) 0.6233(2) 0.31776(17) 0.0336(4) Uani d D 1 . . H H4 0.3805 0.5959 0.2759 0.050 Uiso d RD 1 . . O O5 -0.04042(15) 0.1704(3) 0.42311(15) 0.0274(3) Uani d . 1 . . H H5 -0.0931 0.2564 0.3735 0.041 Uiso calc R 1 . . loop_ _atom_site_aniso_label _atom_site_aniso_U_11 _atom_site_aniso_U_22 _atom_site_aniso_U_33 _atom_site_aniso_U_12 _atom_site_aniso_U_13 _atom_site_aniso_U_23 Cl1 0.0535(4) 0.0984(7) 0.0405(4) -0.0075(4) 0.0196(3) -0.0042(4) Cl2 0.0872(5) 0.0321(3) 0.0549(4) -0.0001(4) -0.0123(4) -0.0081(3) C1 0.0339(12) 0.0377(13) 0.0292(11) 0.0008(10) -0.0040(9) -0.0007(10) C2 0.0274(11) 0.0271(10) 0.0304(11) -0.0002(10) 0.0048(9) 0.0064(9) C3 0.0185(9) 0.0225(10) 0.0233(10) -0.0014(8) 0.0018(8) 0.0011(8) C4 0.0213(10) 0.0248(11) 0.0288(11) 0.0005(9) 0.0052(9) 0.0000(9) C5 0.0191(9) 0.0233(11) 0.0324(11) -0.0007(8) 0.0029(8) -0.0030(9) C6 0.0247(10) 0.0227(10) 0.0332(11) 0.0007(9) 0.0017(9) 0.0044(9) N1 0.0180(7) 0.0224(8) 0.0259(9) 0.0000(7) 0.0031(7) -0.0006(7) O1 0.0347(9) 0.0503(11) 0.0494(10) 0.0142(8) 0.0097(8) 0.0129(9) O2 0.0424(9) 0.0425(10) 0.0337(9) 0.0120(8) -0.0048(7) -0.0105(7) O3 0.0238(7) 0.0236(8) 0.0433(9) 0.0036(6) -0.0002(7) 0.0001(7) O4 0.0293(8) 0.0219(7) 0.0510(10) -0.0038(6) 0.0105(7) 0.0024(7) O5 0.0179(7) 0.0308(8) 0.0337(8) -0.0002(6) 0.0043(6) 0.0027(6) loop_ _atom_type_symbol _atom_type_description _atom_type_scat_dispersion_real _atom_type_scat_dispersion_imag _atom_type_scat_source C C 0.0033 0.0016 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' H H 0.0000 0.0000 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' N N 0.0061 0.0033 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' O O 0.0106 0.0060 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' Cl Cl 0.1484 0.1585 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' loop_ _geom_angle_atom_site_label_1 _geom_angle_atom_site_label_2 _geom_angle_atom_site_label_3 _geom_angle_site_symmetry_1 _geom_angle_site_symmetry_3 _geom_angle _geom_angle_publ_flag C2 C1 Cl1 . . 109.75(16) ? C2 C1 Cl2 . . 110.36(16) ? Cl1 C1 Cl2 . . 110.39(14) ? C2 C1 H1 . . 108.8 ? Cl1 C1 H1 . . 108.8 ? Cl2 C1 H1 . . 108.8 ? O1 C2 O2 . . 127.1(2) ? O1 C2 C1 . . 114.5(2) ? O2 C2 C1 . . 118.38(19) ? N1 C3 C6 . . 108.33(17) ? N1 C3 C4 . . 107.93(16) ? C6 C3 C4 . . 110.28(16) ? N1 C3 C5 . . 108.57(16) ? C6 C3 C5 . . 110.83(16) ? C4 C3 C5 . . 110.81(17) ? O3 C4 C3 . . 112.12(16) ? O3 C4 H4A . . 109.2 ? C3 C4 H4A . . 109.2 ? O3 C4 H4B . . 109.2 ? C3 C4 H4B . . 109.2 ? H4A C4 H4B . . 107.9 ? O5 C5 C3 . . 112.99(16) ? O5 C5 H5A . . 109.0 ? C3 C5 H5A . . 109.0 ? O5 C5 H5B . . 109.0 ? C3 C5 H5B . . 109.0 ? H5A C5 H5B . . 107.8 ? O4 C6 C3 . . 112.27(17) ? O4 C6 H6A . . 109.2 ? C3 C6 H6A . . 109.2 ? O4 C6 H6B . . 109.2 ? C3 C6 H6B . . 109.2 ? H6A C6 H6B . . 107.9 ? C3 N1 H1A . . 109.5 ? C3 N1 H1B . . 109.5 ? H1A N1 H1B . . 109.5 ? C3 N1 H1C . . 109.5 ? H1A N1 H1C . . 109.5 ? H1B N1 H1C . . 109.5 ? C4 O3 H3 . . 106.3 ? C6 O4 H4 . . 109.1 ? C5 O5 H5 . . 109.5 ? loop_ _geom_bond_atom_site_label_1 _geom_bond_atom_site_label_2 _geom_bond_site_symmetry_2 _geom_bond_distance _geom_bond_publ_flag Cl1 C1 . 1.765(2) ? Cl2 C1 . 1.773(3) ? C1 C2 . 1.536(3) ? C1 H1 . 0.9800 ? C2 O1 . 1.236(3) ? C2 O2 . 1.247(3) ? C3 N1 . 1.499(3) ? C3 C6 . 1.525(3) ? C3 C4 . 1.527(3) ? C3 C5 . 1.531(3) ? C4 O3 . 1.411(2) ? C4 H4A . 0.9700 ? C4 H4B . 0.9700 ? C5 O5 . 1.421(2) ? C5 H5A . 0.9700 ? C5 H5B . 0.9700 ? C6 O4 . 1.413(3) ? C6 H6A . 0.9700 ? C6 H6B . 0.9700 ? N1 H1A . 0.8900 ? N1 H1B . 0.8900 ? N1 H1C . 0.8900 ? O3 H3 . 0.8119 ? O4 H4 . 0.8205 ? O5 H5 . 0.8200 ? loop_ _geom_hbond_atom_site_label_D _geom_hbond_atom_site_label_H _geom_hbond_atom_site_label_A _geom_hbond_site_symmetry_A _geom_hbond_distance_DH _geom_hbond_distance_HA _geom_hbond_distance_DA _geom_hbond_angle_DHA N1 H1A O3 2_656 0.89 2.00 2.881(2) 169.2 N1 H1B O2 2_646 0.89 1.97 2.858(2) 171.7 N1 H1C O5 2_556 0.89 2.03 2.909(2) 168.6 O3 H3 O4 1_545 0.81 1.85 2.654(2) 169.3 O4 H4 O1 . 0.82 1.84 2.655(2) 172.6 O5 H5 O2 1_455 0.82 1.88 2.691(2) 167.9