#------------------------------------------------------------------------------ #$Date: 2011-09-10 06:16:28 +0300 (Sat, 10 Sep 2011) $ #$Revision: 25271 $ #$URL: file:///home/coder/svn-repositories/cod/cif/2/2221989.cif $ #------------------------------------------------------------------------------ # # This file is available in the Crystallography Open Database (COD), # http://www.crystallography.net/. The original data for this entry # were provided by IUCr Journals, http://journals.iucr.org/. # # The file may be used within the scientific community so long as # proper attribution is given to the journal article from which the # data were obtained. # data_2221989 loop_ _publ_author_name 'Yu, Yan-Hong' 'Qian, Kun' _publ_section_title ; 1,3-Dihydroxy-2-(hydroxymethyl)propan-2-aminium 2,2-dichloroacetate ; _journal_coeditor_code DN2442 _journal_issue 6 _journal_name_full 'Acta Crystallographica Section E' _journal_page_first o1278 _journal_volume 65 _journal_year 2009 _chemical_formula_iupac 'C4 H12 N O3 + , C2 H Cl2 O2 -' _chemical_formula_moiety 'C4 H12 N O3 + , C2 H Cl2 O2 -' _chemical_formula_sum 'C6 H13 Cl2 N O5' _chemical_formula_weight 250.07 _chemical_name_systematic ; 1,3-Dihydroxy-2-(hydroxymethyl)propan-2-aminium 2,2-dichloroacetate ; _space_group_IT_number 4 _symmetry_cell_setting monoclinic _symmetry_space_group_name_Hall 'P 2yb' _symmetry_space_group_name_H-M 'P 1 21 1' _atom_sites_solution_hydrogens geom _atom_sites_solution_primary direct _atom_sites_solution_secondary difmap _audit_creation_method SHELXL97 _cell_angle_alpha 90.00 _cell_angle_beta 97.03(3) _cell_angle_gamma 90.00 _cell_formula_units_Z 2 _cell_length_a 8.6231(17) _cell_length_b 6.1376(12) _cell_length_c 9.898(2) _cell_measurement_reflns_used 735 _cell_measurement_temperature 293(2) _cell_measurement_theta_max 27.4605 _cell_measurement_theta_min 2.7997 _cell_volume 519.91(18) _computing_cell_refinement 'CrystalClear (Rigaku, 2005)' _computing_data_collection 'CrystalClear (Rigaku, 2005)' _computing_data_reduction 'CrystalClear (Rigaku, 2005)' _computing_molecular_graphics ; ORTEPIII (Burnett & Johnson, 1996), ORTEP-3 for Windows (Farrugia, 1997) and PLATON (Spek, 2009) ; _computing_publication_material 'SHELXL97 (Sheldrick, 2008)' _computing_structure_refinement 'SHELXL97 (Sheldrick, 2008)' _computing_structure_solution 'SHELXS97 (Sheldrick, 2008)' _diffrn_ambient_temperature 293(2) _diffrn_detector_area_resol_mean 13.6612 _diffrn_measured_fraction_theta_full 0.997 _diffrn_measured_fraction_theta_max 0.997 _diffrn_measurement_device_type 'Rigaku SCXmini' _diffrn_measurement_method \w _diffrn_radiation_monochromator graphite _diffrn_radiation_source 'fine-focus sealed tube' _diffrn_radiation_type MoK\a _diffrn_radiation_wavelength 0.71073 _diffrn_reflns_av_R_equivalents 0.0253 _diffrn_reflns_av_sigmaI/netI 0.0315 _diffrn_reflns_limit_h_max 10 _diffrn_reflns_limit_h_min -10 _diffrn_reflns_limit_k_max 7 _diffrn_reflns_limit_k_min -7 _diffrn_reflns_limit_l_max 12 _diffrn_reflns_limit_l_min -12 _diffrn_reflns_number 4914 _diffrn_reflns_theta_full 25.99 _diffrn_reflns_theta_max 25.99 _diffrn_reflns_theta_min 3.34 _diffrn_standards_number 0 _exptl_absorpt_coefficient_mu 0.621 _exptl_absorpt_correction_T_max 0.9292 _exptl_absorpt_correction_T_min 0.8754 _exptl_absorpt_correction_type multi-scan _exptl_absorpt_process_details '(CrystalClear; Rigaku, 2005)' _exptl_crystal_colour colourless _exptl_crystal_density_diffrn 1.597 _exptl_crystal_density_method 'not measured' _exptl_crystal_description prism _exptl_crystal_F_000 260 _exptl_crystal_size_max 0.22 _exptl_crystal_size_mid 0.18 _exptl_crystal_size_min 0.12 _refine_diff_density_max 0.234 _refine_diff_density_min -0.246 _refine_ls_abs_structure_details 'Flack (1983), 920 Friedel pairs' _refine_ls_abs_structure_Flack 0.67(6) _refine_ls_extinction_method none _refine_ls_goodness_of_fit_ref 1.095 _refine_ls_hydrogen_treatment constr _refine_ls_matrix_type full _refine_ls_number_parameters 130 _refine_ls_number_reflns 2044 _refine_ls_number_restraints 3 _refine_ls_restrained_S_all 1.094 _refine_ls_R_factor_all 0.0332 _refine_ls_R_factor_gt 0.0309 _refine_ls_shift/su_max 0.000 _refine_ls_shift/su_mean 0.000 _refine_ls_structure_factor_coef Fsqd _refine_ls_weighting_details 'calc w = 1/[\s^2^(Fo^2^)+(0.0218P)^2^+0.1660P] where P=(Fo^2^+2Fc^2^)/3' _refine_ls_weighting_scheme calc _refine_ls_wR_factor_gt 0.0682 _refine_ls_wR_factor_ref 0.0693 _reflns_number_gt 1951 _reflns_number_total 2044 _reflns_threshold_expression I>2\s(I) _[local]_cod_data_source_file dn2442.cif _[local]_cod_data_source_block I _[local]_cod_cif_authors_sg_H-M 'P 21' _cod_original_cell_volume 519.92(18) _cod_database_code 2221989 loop_ _symmetry_equiv_pos_as_xyz 'x, y, z' '-x, y+1/2, -z' loop_ _atom_site_type_symbol _atom_site_label _atom_site_fract_x _atom_site_fract_y _atom_site_fract_z _atom_site_U_iso_or_equiv _atom_site_adp_type _atom_site_calc_flag _atom_site_refinement_flags _atom_site_occupancy Cl Cl1 0.86491(9) 0.39154(15) 0.00483(7) 0.0630(2) Uani d . 1 Cl Cl2 0.70850(10) 0.03942(11) 0.13016(8) 0.0598(2) Uani d . 1 C C1 0.6938(3) 0.3135(4) 0.0737(2) 0.0342(5) Uani d . 1 H H1 0.6046 0.3263 0.0026 0.041 Uiso calc R 1 C C2 0.6675(2) 0.4656(4) 0.1919(2) 0.0282(5) Uani d . 1 C C3 0.2265(2) 0.2569(3) 0.3756(2) 0.0215(4) Uani d . 1 C C4 0.3748(2) 0.1471(3) 0.3394(2) 0.0248(4) Uani d . 1 H H4A 0.3540 0.0827 0.2496 0.030 Uiso calc R 1 H H4B 0.4558 0.2562 0.3365 0.030 Uiso calc R 1 C C5 0.0883(2) 0.0986(3) 0.3577(2) 0.0249(4) Uani d . 1 H H5A 0.0543 0.0801 0.2613 0.030 Uiso calc R 1 H H5B 0.1226 -0.0423 0.3944 0.030 Uiso calc R 1 C C6 0.1911(2) 0.4607(3) 0.2892(2) 0.0270(4) Uani d . 1 H H6A 0.1841 0.4215 0.1937 0.032 Uiso calc R 1 H H6B 0.0905 0.5188 0.3058 0.032 Uiso calc R 1 N N1 0.25465(19) 0.3243(3) 0.52217(16) 0.0221(3) Uani d . 1 H H1A 0.3470 0.3903 0.5382 0.033 Uiso calc R 1 H H1B 0.2540 0.2070 0.5750 0.033 Uiso calc R 1 H H1C 0.1797 0.4156 0.5403 0.033 Uiso calc R 1 O O1 0.54454(19) 0.5709(3) 0.17435(18) 0.0444(4) Uani d . 1 O O2 0.76863(19) 0.4708(3) 0.29336(16) 0.0403(4) Uani d . 1 O O3 0.42905(16) -0.0160(2) 0.43407(15) 0.0306(4) Uani d D 1 H H3 0.3857 -0.1281 0.4071 0.046 Uiso d RD 1 O O4 0.30642(17) 0.6233(2) 0.31776(17) 0.0336(4) Uani d D 1 H H4 0.3805 0.5959 0.2759 0.050 Uiso d RD 1 O O5 -0.04042(15) 0.1704(3) 0.42311(15) 0.0274(3) Uani d . 1 H H5 -0.0931 0.2564 0.3735 0.041 Uiso calc R 1 loop_ _atom_site_aniso_label _atom_site_aniso_U_11 _atom_site_aniso_U_22 _atom_site_aniso_U_33 _atom_site_aniso_U_12 _atom_site_aniso_U_13 _atom_site_aniso_U_23 Cl1 0.0535(4) 0.0984(7) 0.0405(4) -0.0075(4) 0.0196(3) -0.0042(4) Cl2 0.0872(5) 0.0321(3) 0.0549(4) -0.0001(4) -0.0123(4) -0.0081(3) C1 0.0339(12) 0.0377(13) 0.0292(11) 0.0008(10) -0.0040(9) -0.0007(10) C2 0.0274(11) 0.0271(10) 0.0304(11) -0.0002(10) 0.0048(9) 0.0064(9) C3 0.0185(9) 0.0225(10) 0.0233(10) -0.0014(8) 0.0018(8) 0.0011(8) C4 0.0213(10) 0.0248(11) 0.0288(11) 0.0005(9) 0.0052(9) 0.0000(9) C5 0.0191(9) 0.0233(11) 0.0324(11) -0.0007(8) 0.0029(8) -0.0030(9) C6 0.0247(10) 0.0227(10) 0.0332(11) 0.0007(9) 0.0017(9) 0.0044(9) N1 0.0180(7) 0.0224(8) 0.0259(9) 0.0000(7) 0.0031(7) -0.0006(7) O1 0.0347(9) 0.0503(11) 0.0494(10) 0.0142(8) 0.0097(8) 0.0129(9) O2 0.0424(9) 0.0425(10) 0.0337(9) 0.0120(8) -0.0048(7) -0.0105(7) O3 0.0238(7) 0.0236(8) 0.0433(9) 0.0036(6) -0.0002(7) 0.0001(7) O4 0.0293(8) 0.0219(7) 0.0510(10) -0.0038(6) 0.0105(7) 0.0024(7) O5 0.0179(7) 0.0308(8) 0.0337(8) -0.0002(6) 0.0043(6) 0.0027(6) loop_ _atom_type_symbol _atom_type_description _atom_type_scat_dispersion_real _atom_type_scat_dispersion_imag _atom_type_scat_source C C 0.0033 0.0016 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' H H 0.0000 0.0000 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' N N 0.0061 0.0033 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' O O 0.0106 0.0060 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' Cl Cl 0.1484 0.1585 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' loop_ _geom_angle_atom_site_label_1 _geom_angle_atom_site_label_2 _geom_angle_atom_site_label_3 _geom_angle C2 C1 Cl1 109.75(16) C2 C1 Cl2 110.36(16) Cl1 C1 Cl2 110.39(14) C2 C1 H1 108.8 Cl1 C1 H1 108.8 Cl2 C1 H1 108.8 O1 C2 O2 127.1(2) O1 C2 C1 114.5(2) O2 C2 C1 118.38(19) N1 C3 C6 108.33(17) N1 C3 C4 107.93(16) C6 C3 C4 110.28(16) N1 C3 C5 108.57(16) C6 C3 C5 110.83(16) C4 C3 C5 110.81(17) O3 C4 C3 112.12(16) O3 C4 H4A 109.2 C3 C4 H4A 109.2 O3 C4 H4B 109.2 C3 C4 H4B 109.2 H4A C4 H4B 107.9 O5 C5 C3 112.99(16) O5 C5 H5A 109.0 C3 C5 H5A 109.0 O5 C5 H5B 109.0 C3 C5 H5B 109.0 H5A C5 H5B 107.8 O4 C6 C3 112.27(17) O4 C6 H6A 109.2 C3 C6 H6A 109.2 O4 C6 H6B 109.2 C3 C6 H6B 109.2 H6A C6 H6B 107.9 C3 N1 H1A 109.5 C3 N1 H1B 109.5 H1A N1 H1B 109.5 C3 N1 H1C 109.5 H1A N1 H1C 109.5 H1B N1 H1C 109.5 C4 O3 H3 106.3 C6 O4 H4 109.1 C5 O5 H5 109.5 loop_ _geom_bond_atom_site_label_1 _geom_bond_atom_site_label_2 _geom_bond_distance Cl1 C1 1.765(2) Cl2 C1 1.773(3) C1 C2 1.536(3) C1 H1 0.9800 C2 O1 1.236(3) C2 O2 1.247(3) C3 N1 1.499(3) C3 C6 1.525(3) C3 C4 1.527(3) C3 C5 1.531(3) C4 O3 1.411(2) C4 H4A 0.9700 C4 H4B 0.9700 C5 O5 1.421(2) C5 H5A 0.9700 C5 H5B 0.9700 C6 O4 1.413(3) C6 H6A 0.9700 C6 H6B 0.9700 N1 H1A 0.8900 N1 H1B 0.8900 N1 H1C 0.8900 O3 H3 0.8119 O4 H4 0.8205 O5 H5 0.8200 loop_ _geom_hbond_atom_site_label_D _geom_hbond_atom_site_label_H _geom_hbond_atom_site_label_A _geom_hbond_site_symmetry_A _geom_hbond_distance_DH _geom_hbond_distance_HA _geom_hbond_distance_DA _geom_hbond_angle_DHA N1 H1A O3 2_656 0.89 2.00 2.881(2) 169.2 N1 H1B O2 2_646 0.89 1.97 2.858(2) 171.7 N1 H1C O5 2_556 0.89 2.03 2.909(2) 168.6 O3 H3 O4 1_545 0.81 1.85 2.654(2) 169.3 O4 H4 O1 . 0.82 1.84 2.655(2) 172.6 O5 H5 O2 1_455 0.82 1.88 2.691(2) 167.9