#------------------------------------------------------------------------------ #$Date: 2011-09-17 23:27:16 +0300 (Sat, 17 Sep 2011) $ #$Revision: 26029 $ #$URL: file:///home/coder/svn-repositories/cod/cif/2/2224128.cif $ #------------------------------------------------------------------------------ # # This file is available in the Crystallography Open Database (COD), # http://www.crystallography.net/. The original data for this entry # were provided by IUCr Journals, http://journals.iucr.org/. # # The file may be used within the scientific community so long as # proper attribution is given to the journal article from which the # data were obtained. # data_2224128 loop_ _publ_author_name 'Fatima, Ismat' 'Munawar, Munawar Ali' 'Khan, Misbahul Ain' 'Nadeem, Sohail' 'Amjad, Rana' _publ_section_title ; 6-Benzylsulfanyl-9H-purine ; _journal_coeditor_code BT5117 _journal_issue 12 _journal_name_full 'Acta Crystallographica Section E' _journal_page_first o2994 _journal_volume 65 _journal_year 2009 _chemical_formula_iupac 'C12 H10 N4 S' _chemical_formula_moiety 'C12 H10 N4 S' _chemical_formula_sum 'C12 H10 N4 S' _chemical_formula_weight 242.30 _chemical_name_common ; ; _chemical_name_systematic ; 6-Benzylsulfanyl-9H-purine ; _space_group_IT_number 19 _symmetry_cell_setting orthorhombic _symmetry_space_group_name_Hall 'P 2ac 2ab' _symmetry_space_group_name_H-M 'P 21 21 21' _atom_sites_solution_hydrogens geom _atom_sites_solution_primary direct _atom_sites_solution_secondary difmap _audit_creation_method SHELXL-97 _cell_angle_alpha 90.00 _cell_angle_beta 90.00 _cell_angle_gamma 90.00 _cell_formula_units_Z 4 _cell_length_a 5.5717(3) _cell_length_b 9.4733(4) _cell_length_c 22.4656(14) _cell_measurement_reflns_used 2230 _cell_measurement_temperature 296(2) _cell_measurement_theta_max 24.75 _cell_measurement_theta_min 2.33 _cell_volume 1185.79(11) _computing_cell_refinement 'SAINT (Bruker, 2007)' _computing_data_collection 'APEX2 (Bruker, 2007)' _computing_data_reduction 'SAINT (Bruker, 2007)' _computing_molecular_graphics 'ORTEP-3 for Windows (Farrugia, 1997) and PLATON (Spek, 2009)' _computing_publication_material ; WinGX (Farrugia, 1999) and PLATON (Spek, 2009) ; _computing_structure_refinement 'SHELXL97 (Sheldrick, 2008)' _computing_structure_solution 'SHELXS97 (Sheldrick, 2008)' _diffrn_ambient_temperature 296(2) _diffrn_measured_fraction_theta_full 0.997 _diffrn_measured_fraction_theta_max 0.997 _diffrn_measurement_device_type 'Bruker Kappa APEXII CCD' _diffrn_measurement_method '\f and \w' _diffrn_radiation_monochromator graphite _diffrn_radiation_source 'fine-focus sealed tube' _diffrn_radiation_type MoK\a _diffrn_radiation_wavelength 0.71073 _diffrn_reflns_av_R_equivalents 0.0318 _diffrn_reflns_av_sigmaI/netI 0.0449 _diffrn_reflns_limit_h_max 6 _diffrn_reflns_limit_h_min -7 _diffrn_reflns_limit_k_max 12 _diffrn_reflns_limit_k_min -12 _diffrn_reflns_limit_l_max 29 _diffrn_reflns_limit_l_min -28 _diffrn_reflns_number 7941 _diffrn_reflns_theta_full 28.27 _diffrn_reflns_theta_max 28.27 _diffrn_reflns_theta_min 2.33 _diffrn_standards_number 0 _exptl_absorpt_coefficient_mu 0.255 _exptl_absorpt_correction_T_max 0.9775 _exptl_absorpt_correction_T_min 0.9298 _exptl_absorpt_correction_type multi-scan _exptl_absorpt_process_details '(SADABS; Bruker, 2007)' _exptl_crystal_colour red _exptl_crystal_density_diffrn 1.357 _exptl_crystal_density_method 'not measured' _exptl_crystal_description needle _exptl_crystal_F_000 504 _exptl_crystal_size_max 0.29 _exptl_crystal_size_mid 0.12 _exptl_crystal_size_min 0.09 _refine_diff_density_max 0.168 _refine_diff_density_min -0.165 _refine_ls_abs_structure_details 'Flack (1983), 1207 Friedel pairs' _refine_ls_abs_structure_Flack -0.09(8) _refine_ls_extinction_method none _refine_ls_goodness_of_fit_ref 0.983 _refine_ls_hydrogen_treatment mixed _refine_ls_matrix_type full _refine_ls_number_parameters 157 _refine_ls_number_reflns 2941 _refine_ls_number_restraints 0 _refine_ls_restrained_S_all 0.983 _refine_ls_R_factor_all 0.0661 _refine_ls_R_factor_gt 0.0400 _refine_ls_shift/su_max 0.000 _refine_ls_shift/su_mean 0.000 _refine_ls_structure_factor_coef Fsqd _refine_ls_weighting_details 'calc w=1/[\s^2^(Fo^2^)+(0.0419P)^2^] where P=(Fo^2^+2Fc^2^)/3' _refine_ls_weighting_scheme calc _refine_ls_wR_factor_gt 0.0789 _refine_ls_wR_factor_ref 0.0879 _reflns_number_gt 2102 _reflns_number_total 2941 _reflns_threshold_expression I>2\s(I) _[local]_cod_data_source_file bt5117.cif _[local]_cod_data_source_block I _cod_depositor_comments ; The following automatic conversions were performed: '_symmetry_cell_setting' value 'Orthorhombic' changed to 'orthorhombic' according to '/home/saulius/struct/CIF-dictionaries/cif_core.dic' dictionary named 'cif_core.dic' version 2.4.1 from 2010-06-29. '_refine_ls_hydrogen_treatment' value 'Mixed' changed to 'mixed' according to '/home/saulius/struct/CIF-dictionaries/cif_core.dic' dictionary named 'cif_core.dic' version 2.4.1 from 2010-06-29. Automatic conversion script Id: cif_fix_enum 1527 2010-12-29 10:47:43Z saulius ; _cod_database_code 2224128 loop_ _symmetry_equiv_pos_as_xyz 'x, y, z' '-x+1/2, -y, z+1/2' '-x, y+1/2, -z+1/2' 'x+1/2, -y+1/2, -z' loop_ _atom_site_type_symbol _atom_site_label _atom_site_fract_x _atom_site_fract_y _atom_site_fract_z _atom_site_U_iso_or_equiv _atom_site_adp_type _atom_site_calc_flag _atom_site_refinement_flags _atom_site_occupancy _atom_site_disorder_assembly _atom_site_disorder_group S S1 0.47086(11) 0.20744(5) 0.15044(2) 0.05534(18) Uani d . 1 . . N N1 0.3943(4) -0.07206(16) 0.13660(7) 0.0553(5) Uani d . 1 . . N N2 0.6348(4) -0.25776(16) 0.18001(8) 0.0577(5) Uani d . 1 . . N N3 0.9619(4) -0.16476(15) 0.23955(8) 0.0519(5) Uani d . 1 . . H H3N 1.020(4) -0.2456(19) 0.2541(8) 0.062 Uiso d . 1 . . N N4 0.8929(3) 0.06585(15) 0.22833(7) 0.0488(4) Uani d . 1 . . C C1 0.7639(4) -0.15403(16) 0.20432(9) 0.0454(5) Uani d . 1 . . C C2 0.7219(4) -0.01004(17) 0.19749(8) 0.0432(5) Uani d . 1 . . C C3 0.5298(4) 0.02806(17) 0.16181(8) 0.0447(5) Uani d . 1 . . C C4 0.4558(4) -0.2074(2) 0.14777(10) 0.0618(6) Uani d . 1 . . H H4 0.3578 -0.2750 0.1302 0.074 Uiso calc R 1 . . C C5 1.0294(4) -0.03046(17) 0.25248(10) 0.0530(5) Uani d . 1 . . H H5 1.1608 -0.0090 0.2764 0.064 Uiso calc R 1 . . C C6 0.2345(4) 0.2002(2) 0.09542(10) 0.0662(6) Uani d . 1 . . H H6A 0.2763 0.1328 0.0646 0.079 Uiso calc R 1 . . H H6B 0.0862 0.1694 0.1140 0.079 Uiso calc R 1 . . C C7 0.2003(4) 0.3442(2) 0.06836(9) 0.0500(5) Uani d . 1 . . C C8 0.3547(5) 0.3944(2) 0.02616(10) 0.0646(6) Uani d . 1 . . H H8 0.4883 0.3409 0.0158 0.077 Uiso calc R 1 . . C C9 0.3174(5) 0.5222(2) -0.00144(11) 0.0741(8) Uani d . 1 . . H H9 0.4228 0.5532 -0.0307 0.089 Uiso calc R 1 . . C C10 0.1270(6) 0.6027(2) 0.01415(12) 0.0708(7) Uani d . 1 . . H H10 0.1011 0.6889 -0.0046 0.085 Uiso calc R 1 . . C C11 -0.0261(5) 0.5576(3) 0.05709(12) 0.0780(7) Uani d . 1 . . H H11 -0.1550 0.6139 0.0684 0.094 Uiso calc R 1 . . C C12 0.0092(5) 0.4280(3) 0.08406(10) 0.0690(6) Uani d . 1 . . H H12 -0.0976 0.3972 0.1131 0.083 Uiso calc R 1 . . loop_ _atom_site_aniso_label _atom_site_aniso_U_11 _atom_site_aniso_U_22 _atom_site_aniso_U_33 _atom_site_aniso_U_12 _atom_site_aniso_U_13 _atom_site_aniso_U_23 S1 0.0640(4) 0.0405(3) 0.0616(3) -0.0021(3) -0.0128(3) 0.0078(2) N1 0.0659(12) 0.0470(9) 0.0530(11) -0.0109(9) -0.0074(9) 0.0019(8) N2 0.0708(12) 0.0373(8) 0.0650(12) -0.0098(9) -0.0048(11) -0.0040(8) N3 0.0602(12) 0.0309(7) 0.0647(11) 0.0005(8) -0.0058(10) 0.0064(7) N4 0.0571(11) 0.0330(7) 0.0562(11) -0.0034(8) -0.0085(9) 0.0020(7) C1 0.0582(14) 0.0303(9) 0.0478(11) -0.0028(9) 0.0053(10) 0.0011(8) C2 0.0525(13) 0.0308(9) 0.0464(11) -0.0040(9) 0.0029(9) 0.0022(8) C3 0.0526(12) 0.0386(9) 0.0431(11) -0.0025(9) 0.0044(10) 0.0049(8) C4 0.0758(16) 0.0467(11) 0.0627(13) -0.0193(12) -0.0046(14) -0.0087(11) C5 0.0587(14) 0.0378(9) 0.0625(13) -0.0042(10) -0.0083(12) 0.0024(9) C6 0.0704(15) 0.0566(12) 0.0715(15) -0.0128(12) -0.0217(12) 0.0201(11) C7 0.0496(13) 0.0480(11) 0.0525(13) -0.0036(10) -0.0095(10) 0.0048(10) C8 0.0681(16) 0.0550(12) 0.0705(15) 0.0111(11) 0.0186(13) 0.0048(12) C9 0.094(2) 0.0577(13) 0.0710(17) -0.0028(15) 0.0181(15) 0.0168(12) C10 0.0819(19) 0.0491(12) 0.0814(18) 0.0038(13) -0.0133(16) 0.0103(13) C11 0.0651(17) 0.0740(15) 0.0948(19) 0.0241(15) 0.0010(17) -0.0048(14) C12 0.0568(15) 0.0833(15) 0.0668(15) -0.0018(15) 0.0091(13) 0.0148(12) loop_ _atom_type_symbol _atom_type_description _atom_type_scat_dispersion_real _atom_type_scat_dispersion_imag _atom_type_scat_source C C 0.0033 0.0016 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' H H 0.0000 0.0000 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' N N 0.0061 0.0033 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' S S 0.1246 0.1234 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' loop_ _geom_angle_atom_site_label_1 _geom_angle_atom_site_label_2 _geom_angle_atom_site_label_3 _geom_angle_site_symmetry_1 _geom_angle_site_symmetry_3 _geom_angle _geom_angle_publ_flag C3 S1 C6 . . 101.51(10) ? C3 N1 C4 . . 116.80(18) ? C4 N2 C1 . . 111.39(16) ? C5 N3 C1 . . 106.18(16) ? C5 N3 H3N . . 128.6(13) ? C1 N3 H3N . . 124.8(14) ? C5 N4 C2 . . 104.28(15) ? N2 C1 N3 . . 128.28(17) ? N2 C1 C2 . . 125.9(2) ? N3 C1 C2 . . 105.86(16) ? N4 C2 C3 . . 133.49(16) ? N4 C2 C1 . . 109.82(18) ? C3 C2 C1 . . 116.67(18) ? N1 C3 C2 . . 119.75(16) ? N1 C3 S1 . . 121.40(16) ? C2 C3 S1 . . 118.85(14) ? N2 C4 N1 . . 129.52(19) ? N2 C4 H4 . . 115.2 ? N1 C4 H4 . . 115.2 ? N4 C5 N3 . . 113.9(2) ? N4 C5 H5 . . 123.1 ? N3 C5 H5 . . 123.1 ? C7 C6 S1 . . 109.51(15) ? C7 C6 H6A . . 109.8 ? S1 C6 H6A . . 109.8 ? C7 C6 H6B . . 109.8 ? S1 C6 H6B . . 109.8 ? H6A C6 H6B . . 108.2 ? C8 C7 C12 . . 117.73(19) ? C8 C7 C6 . . 121.1(2) ? C12 C7 C6 . . 121.2(2) ? C7 C8 C9 . . 121.6(2) ? C7 C8 H8 . . 119.2 ? C9 C8 H8 . . 119.2 ? C10 C9 C8 . . 119.9(2) ? C10 C9 H9 . . 120.1 ? C8 C9 H9 . . 120.1 ? C9 C10 C11 . . 120.0(2) ? C9 C10 H10 . . 120.0 ? C11 C10 H10 . . 120.0 ? C10 C11 C12 . . 120.1(2) ? C10 C11 H11 . . 120.0 ? C12 C11 H11 . . 120.0 ? C7 C12 C11 . . 120.7(2) ? C7 C12 H12 . . 119.7 ? C11 C12 H12 . . 119.7 ? loop_ _geom_bond_atom_site_label_1 _geom_bond_atom_site_label_2 _geom_bond_site_symmetry_2 _geom_bond_distance _geom_bond_publ_flag S1 C3 . 1.7495(17) ? S1 C6 . 1.808(2) ? N1 C3 . 1.338(2) ? N1 C4 . 1.350(3) ? N2 C4 . 1.322(3) ? N2 C1 . 1.334(2) ? N3 C5 . 1.358(2) ? N3 C1 . 1.362(3) ? N3 H3N . 0.894(19) ? N4 C5 . 1.306(2) ? N4 C2 . 1.380(2) ? C1 C2 . 1.392(2) ? C2 C3 . 1.385(3) ? C4 H4 . 0.9300 ? C5 H5 . 0.9300 ? C6 C7 . 1.506(3) ? C6 H6A . 0.9700 ? C6 H6B . 0.9700 ? C7 C8 . 1.366(3) ? C7 C12 . 1.374(3) ? C8 C9 . 1.376(3) ? C8 H8 . 0.9300 ? C9 C10 . 1.352(4) ? C9 H9 . 0.9300 ? C10 C11 . 1.357(4) ? C10 H10 . 0.9300 ? C11 C12 . 1.383(3) ? C11 H11 . 0.9300 ? C12 H12 . 0.9300 ? loop_ _geom_hbond_atom_site_label_D _geom_hbond_atom_site_label_H _geom_hbond_atom_site_label_A _geom_hbond_site_symmetry_A _geom_hbond_distance_DH _geom_hbond_distance_HA _geom_hbond_distance_DA _geom_hbond_angle_DHA N3 H3N N4 3_745 0.894(19) 1.892(19) 2.773(2) 167.9(18) loop_ _geom_torsion_atom_site_label_1 _geom_torsion_atom_site_label_2 _geom_torsion_atom_site_label_3 _geom_torsion_atom_site_label_4 _geom_torsion_site_symmetry_1 _geom_torsion_site_symmetry_2 _geom_torsion_site_symmetry_3 _geom_torsion_site_symmetry_4 _geom_torsion _geom_torsion_publ_flag C4 N2 C1 N3 . . . . -179.25(19) ? C4 N2 C1 C2 . . . . -0.2(3) ? C5 N3 C1 N2 . . . . 179.4(2) ? C5 N3 C1 C2 . . . . 0.2(2) ? C5 N4 C2 C3 . . . . -178.5(2) ? C5 N4 C2 C1 . . . . -0.2(2) ? N2 C1 C2 N4 . . . . -179.20(19) ? N3 C1 C2 N4 . . . . 0.0(2) ? N2 C1 C2 C3 . . . . -0.6(3) ? N3 C1 C2 C3 . . . . 178.62(17) ? C4 N1 C3 C2 . . . . -0.2(3) ? C4 N1 C3 S1 . . . . 179.49(15) ? N4 C2 C3 N1 . . . . 179.0(2) ? C1 C2 C3 N1 . . . . 0.8(3) ? N4 C2 C3 S1 . . . . -0.7(3) ? C1 C2 C3 S1 . . . . -178.90(15) ? C6 S1 C3 N1 . . . . -6.23(19) ? C6 S1 C3 C2 . . . . 173.43(16) ? C1 N2 C4 N1 . . . . 1.0(3) ? C3 N1 C4 N2 . . . . -0.8(3) ? C2 N4 C5 N3 . . . . 0.4(2) ? C1 N3 C5 N4 . . . . -0.4(2) ? C3 S1 C6 C7 . . . . -165.98(17) ? S1 C6 C7 C8 . . . . 77.9(2) ? S1 C6 C7 C12 . . . . -103.9(2) ? C12 C7 C8 C9 . . . . -2.2(4) ? C6 C7 C8 C9 . . . . 176.1(2) ? C7 C8 C9 C10 . . . . 1.6(4) ? C8 C9 C10 C11 . . . . 0.3(4) ? C9 C10 C11 C12 . . . . -1.4(4) ? C8 C7 C12 C11 . . . . 1.0(4) ? C6 C7 C12 C11 . . . . -177.3(2) ? C10 C11 C12 C7 . . . . 0.8(4) ?