#------------------------------------------------------------------------------
#$Date: 2025-01-28 09:49:11 +0200 (Tue, 28 Jan 2025) $
#$Revision: 297499 $
#$URL: file:///home/coder/svn-repositories/cod/cif/2/30/04/2300404.cif $
#------------------------------------------------------------------------------
#
# This file is available in the Crystallography Open Database (COD),
# http://www.crystallography.net/. The original data for this entry
# were provided the Crystal Eye server at
# http://wwmm.ch.cam.ac.uk/crystaleye/, created by Nick Day at the
# Peter Murray-Rust laboratory.
#
# The file may be used within the scientific community so long as
# proper attribution is given to the journal article from which the
# data were obtained.
#
data_2300404
loop_
_publ_author_name
'Eccles, Kevin S.'
'Stokes, Stephen P.'
'Daly, Carla A.'
'Barry, Nicola M.'
'McSweeney, Sharon P.'
'O'Neill, Damian J.'
'Kelly, Dawn M.'
'Jennings, W. Brian'
'Ní Dhubhghaill, O. M.'
'Moynihan, Humphrey A.'
'Maguire, Anita R.'
'Lawrence, Simon E.'
_publ_section_title
;
 Evaluation of the Bruker SMART X2S: crystallography for the
 nonspecialist?
;
_journal_coden_ASTM              JACGAR
_journal_coeditor_code           KK5074
_journal_issue                   1
_journal_name_full               'Journal of Applied Crystallography'
_journal_page_first              213
_journal_page_last               215
_journal_paper_doi               10.1107/S0021889810042561
_journal_volume                  44
_journal_year                    2011
_chemical_formula_moiety         'C17 H20 Cl2 N2 Pd'
_chemical_formula_sum            'C17 H20 Cl2 N2 Pd'
_chemical_formula_weight         429.65
_space_group_IT_number           14
_symmetry_cell_setting           monoclinic
_symmetry_space_group_name_Hall  '-P 2ybc'
_symmetry_space_group_name_H-M   'P 1 21/c 1'
_atom_sites_solution_hydrogens   geom
_atom_sites_solution_primary     direct
_atom_sites_solution_secondary   difmap
_audit_creation_method           SHELXL-97
_cell_angle_alpha                90.00
_cell_angle_beta                 90.470(7)
_cell_angle_gamma                90.00
_cell_formula_units_Z            4
_cell_length_a                   9.356(2)
_cell_length_b                   9.9295(19)
_cell_length_c                   19.357(4)
_cell_measurement_reflns_used    8388
_cell_measurement_temperature    300(2)
_cell_measurement_theta_max      25.15
_cell_measurement_theta_min      2.94
_cell_volume                     1798.2(6)
_computing_cell_refinement       'Bruker SAINT'
_computing_data_collection       'Bruker GIS'
_computing_data_reduction        'Bruker SAINT'
_computing_molecular_graphics    'Bruker APEX2'
_computing_structure_refinement  'SHELXL-97 (Sheldrick, 2008)'
_computing_structure_solution    'SHELXS-97 (Sheldrick, 2008)'
_diffrn_ambient_temperature      300(2)
_diffrn_measured_fraction_theta_full 0.991
_diffrn_measured_fraction_theta_max 0.991
_diffrn_measurement_device_type  'Bruker SMART X2S'
_diffrn_measurement_method       'ω scans'
_diffrn_radiation_monochromator  'doubly curved silicon crystal'
_diffrn_radiation_source         'micro-focus sealed tube'
_diffrn_radiation_type           MoK\a
_diffrn_radiation_wavelength     0.71073
_diffrn_reflns_av_R_equivalents  0.0660
_diffrn_reflns_av_sigmaI/netI    0.0457
_diffrn_reflns_limit_h_max       11
_diffrn_reflns_limit_h_min       -11
_diffrn_reflns_limit_k_max       11
_diffrn_reflns_limit_k_min       -11
_diffrn_reflns_limit_l_max       23
_diffrn_reflns_limit_l_min       -23
_diffrn_reflns_number            16537
_diffrn_reflns_theta_full        25.23
_diffrn_reflns_theta_max         25.23
_diffrn_reflns_theta_min         2.18
_exptl_absorpt_coefficient_mu    1.326
_exptl_absorpt_correction_T_max  0.6996
_exptl_absorpt_correction_T_min  0.2196
_exptl_absorpt_correction_type   multi-scan
_exptl_absorpt_process_details   'SADABS V2008/1 (Bruker AXS)'
_exptl_crystal_colour            orange
_exptl_crystal_density_diffrn    1.587
_exptl_crystal_density_method    'not measured'
_exptl_crystal_description       plate
_exptl_crystal_F_000             864
_exptl_crystal_size_max          0.35
_exptl_crystal_size_mid          0.31
_exptl_crystal_size_min          0.29
_refine_diff_density_max         0.755
_refine_diff_density_min         -1.658
_refine_ls_extinction_method     none
_refine_ls_goodness_of_fit_ref   1.151
_refine_ls_hydrogen_treatment    constr
_refine_ls_matrix_type           full
_refine_ls_number_parameters     200
_refine_ls_number_reflns         3229
_refine_ls_number_restraints     0
_refine_ls_restrained_S_all      1.151
_refine_ls_R_factor_all          0.0460
_refine_ls_R_factor_gt           0.0387
_refine_ls_shift/su_max          0.011
_refine_ls_shift/su_mean         0.002
_refine_ls_structure_factor_coef Fsqd
_refine_ls_weighting_details
'calc w=1/[σ²(Fo²)+(0.0723P)²+0.1997P] where P=(Fo²+2Fc²)/3'
_refine_ls_weighting_scheme      calc
_refine_ls_wR_factor_gt          0.1073
_refine_ls_wR_factor_ref         0.1204
_reflns_number_gt                2821
_reflns_number_total             3229
_reflns_threshold_expression     >2sigma(I)
_cod_duplicate_entry             2300314
_cod_data_source_file            kk5074sup1.cif
_cod_data_source_block           Compound_3_X2S
_cod_depositor_comments
;
The following automatic conversions were performed:

'_symmetry_cell_setting' value 'Monoclinic' changed to 'monoclinic'
according to /home/saulius/struct/CIF-dictionaries/cif_core.dic
dictionary named 'cif_core.dic' version 2.4.2 from 2011-04-26.

Automatic conversion script
Id: cif_fix_values 1891 2012-01-12 08:04:46Z andrius 
;
_cod_original_cell_volume        1798.2(7)
_cod_original_sg_symbol_H-M      P12(1)/c1
_cod_database_code               2300404
loop_
_symmetry_equiv_pos_as_xyz
'x, y, z'
'-x, y+1/2, -z+1/2'
'-x, -y, -z'
'x, -y-1/2, z-1/2'
loop_
_atom_site_type_symbol
_atom_site_label
_atom_site_fract_x
_atom_site_fract_y
_atom_site_fract_z
_atom_site_U_iso_or_equiv
_atom_site_adp_type
_atom_site_calc_flag
_atom_site_refinement_flags
_atom_site_occupancy
Pd Pd1 0.34165(3) 0.36794(3) 0.474015(13) 0.03692(15) Uani d . 1
Cl Cl1 0.33208(12) 0.48747(11) 0.37305(5) 0.0569(3) Uani d . 1
Cl Cl2 0.39048(14) 0.17595(12) 0.41289(7) 0.0699(3) Uani d . 1
N N1 0.3512(3) 0.2777(3) 0.56775(16) 0.0421(7) Uani d . 1
N N2 0.2902(3) 0.5254(3) 0.53575(14) 0.0362(6) Uani d . 1
C C1 0.3923(5) 0.1504(4) 0.5816(3) 0.0610(12) Uani d . 1
H H1 0.4214 0.0950 0.5456 0.073 Uiso calc R 1
C C2 0.3918(6) 0.1009(5) 0.6483(3) 0.0713(14) Uani d . 1
H H2 0.4200 0.0126 0.6567 0.086 Uiso calc R 1
C C3 0.3506(5) 0.1803(5) 0.7016(2) 0.0627(12) Uani d . 1
H H3 0.3499 0.1471 0.7465 0.075 Uiso calc R 1
C C4 0.3092(4) 0.3129(5) 0.6877(2) 0.0502(9) Uani d . 1
H H4 0.2809 0.3697 0.7233 0.060 Uiso calc R 1
C C5 0.3110(4) 0.3580(3) 0.6206(2) 0.0384(8) Uani d . 1
C C6 0.2750(3) 0.4970(3) 0.59986(18) 0.0371(7) Uani d . 1
C C7 0.2723(4) 0.6643(4) 0.5106(2) 0.0444(8) Uani d . 1
H H7A 0.3437 0.6819 0.4757 0.053 Uiso calc R 1
H H7B 0.2897 0.7259 0.5487 0.053 Uiso calc R 1
C C8 0.1262(4) 0.6928(4) 0.4804(2) 0.0546(10) Uani d . 1
H H8A 0.0552 0.6929 0.5166 0.066 Uiso calc R 1
H H8B 0.1007 0.6238 0.4470 0.066 Uiso calc R 1
C C9 0.1307(5) 0.8321(5) 0.4448(3) 0.0647(12) Uani d . 1
H H9A 0.1660 0.8983 0.4775 0.078 Uiso calc R 1
H H9B 0.1973 0.8284 0.4067 0.078 Uiso calc R 1
C C10 -0.0122(7) 0.8767(5) 0.4179(4) 0.0789(16) Uani d . 1
H H10A -0.0779 0.8855 0.4561 0.095 Uiso calc R 1
H H10B -0.0500 0.8090 0.3866 0.095 Uiso calc R 1
C C11 -0.0016(8) 1.0109(6) 0.3802(4) 0.108(2) Uani d . 1
H H11A 0.0236 1.0804 0.4125 0.162 Uiso calc R 1
H H11B -0.0921 1.0318 0.3590 0.162 Uiso calc R 1
H H11C 0.0703 1.0050 0.3452 0.162 Uiso calc R 1
C C12 0.2242(4) 0.5925(4) 0.65285(18) 0.0410(8) Uani d . 1
C C13 0.0778(5) 0.6087(4) 0.6635(3) 0.0566(11) Uani d . 1
H H13 0.0124 0.5600 0.6371 0.068 Uiso calc R 1
C C14 0.0307(6) 0.6968(6) 0.7130(3) 0.0757(15) Uani d . 1
H H14 -0.0670 0.7071 0.7199 0.091 Uiso calc R 1
C C15 0.1245(6) 0.7695(5) 0.7522(3) 0.0753(15) Uani d . 1
H H15 0.0906 0.8284 0.7856 0.090 Uiso calc R 1
C C16 0.2708(6) 0.7556(5) 0.7423(3) 0.0741(14) Uani d . 1
H H16 0.3349 0.8053 0.7690 0.089 Uiso calc R 1
C C17 0.3202(5) 0.6678(5) 0.6928(2) 0.0594(11) Uani d . 1
H H17 0.4180 0.6586 0.6859 0.071 Uiso calc R 1
loop_
_atom_type_symbol
_atom_type_description
_atom_type_scat_dispersion_real
_atom_type_scat_dispersion_imag
_atom_type_scat_source
C C 0.0033 0.0016 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4'
H H 0.0000 0.0000 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4'
N N 0.0061 0.0033 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4'
Cl Cl 0.1484 0.1585 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4'
Pd Pd -0.9988 1.0072 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4'
loop_
_geom_angle_atom_site_label_1
_geom_angle_atom_site_label_2
_geom_angle_atom_site_label_3
_geom_angle
N1 Pd1 N2 79.76(12)
N1 Pd1 Cl1 175.01(9)
N2 Pd1 Cl1 95.49(8)
N1 Pd1 Cl2 94.99(9)
N2 Pd1 Cl2 174.12(9)
Cl1 Pd1 Cl2 89.83(4)
C1 N1 C5 118.9(4)
C1 N1 Pd1 127.1(3)
C5 N1 Pd1 114.0(2)
C6 N2 C7 120.9(3)
C6 N2 Pd1 115.4(2)
C7 N2 Pd1 123.7(2)
N1 C1 C2 121.1(4)
N1 C1 H1 119.4
C2 C1 H1 119.4
C3 C2 C1 120.5(4)
C3 C2 H2 119.8
C1 C2 H2 119.8
C2 C3 C4 118.7(4)
C2 C3 H3 120.6
C4 C3 H3 120.6
C5 C4 C3 118.9(4)
C5 C4 H4 120.6
C3 C4 H4 120.6
N1 C5 C4 121.9(3)
N1 C5 C6 114.2(3)
C4 C5 C6 123.9(4)
N2 C6 C5 116.3(3)
N2 C6 C12 124.7(3)
C5 C6 C12 119.0(3)
N2 C7 C8 113.8(3)
N2 C7 H7A 108.8
C8 C7 H7A 108.8
N2 C7 H7B 108.8
C8 C7 H7B 108.8
H7A C7 H7B 107.7
C7 C8 C9 108.2(4)
C7 C8 H8A 110.1
C9 C8 H8A 110.1
C7 C8 H8B 110.1
C9 C8 H8B 110.1
H8A C8 H8B 108.4
C10 C9 C8 113.1(4)
C10 C9 H9A 109.0
C8 C9 H9A 109.0
C10 C9 H9B 109.0
C8 C9 H9B 109.0
H9A C9 H9B 107.8
C9 C10 C11 111.3(5)
C9 C10 H10A 109.4
C11 C10 H10A 109.4
C9 C10 H10B 109.4
C11 C10 H10B 109.4
H10A C10 H10B 108.0
C10 C11 H11A 109.5
C10 C11 H11B 109.5
H11A C11 H11B 109.5
C10 C11 H11C 109.5
H11A C11 H11C 109.5
H11B C11 H11C 109.5
C13 C12 C17 119.0(4)
C13 C12 C6 119.9(3)
C17 C12 C6 121.2(3)
C14 C13 C12 119.8(4)
C14 C13 H13 120.1
C12 C13 H13 120.1
C15 C14 C13 121.1(5)
C15 C14 H14 119.4
C13 C14 H14 119.5
C14 C15 C16 120.1(4)
C14 C15 H15 119.9
C16 C15 H15 119.9
C17 C16 C15 119.6(5)
C17 C16 H16 120.2
C15 C16 H16 120.2
C16 C17 C12 120.3(4)
C16 C17 H17 119.8
C12 C17 H17 119.8
loop_
_geom_bond_atom_site_label_1
_geom_bond_atom_site_label_2
_geom_bond_distance
Pd1 N1 2.025(3)
Pd1 N2 2.028(3)
Pd1 Cl1 2.2876(11)
Pd1 Cl2 2.2917(12)
N1 C1 1.347(5)
N1 C5 1.353(5)
N2 C6 1.282(5)
N2 C7 1.472(5)
C1 C2 1.382(7)
C1 H1 0.9300
C2 C3 1.358(8)
C2 H2 0.9300
C3 C4 1.398(7)
C3 H3 0.9300
C4 C5 1.374(5)
C4 H4 0.9300
C5 C6 1.475(5)
C6 C12 1.479(5)
C7 C8 1.510(5)
C7 H7A 0.9700
C7 H7B 0.9700
C8 C9 1.546(6)
C8 H8A 0.9700
C8 H8B 0.9700
C9 C10 1.497(7)
C9 H9A 0.9700
C9 H9B 0.9700
C10 C11 1.523(8)
C10 H10A 0.9700
C10 H10B 0.9700
C11 H11A 0.9600
C11 H11B 0.9600
C11 H11C 0.9600
C12 C13 1.395(6)
C12 C17 1.397(6)
C13 C14 1.373(7)
C13 H13 0.9300
C14 C15 1.362(8)
C14 H14 0.9300
C15 C16 1.390(7)
C15 H15 0.9300
C16 C17 1.380(6)
C16 H16 0.9300
C17 H17 0.9300
loop_
_cod_entry_issue_id
_cod_entry_issue_origin
_cod_entry_issue_severity
_cod_entry_issue_description
_cod_entry_issue_author
_cod_entry_issue_date
1 original note
;
 This entry describes a structure that was purposely solved automatically with
 minimal human intervention to investigate the capabilities of the Bruker SMART
 X2S benchtop crystallography instrument.
;
'Vaitkus, Antanas' 2025-01-28T09:42:58+02:00
