#------------------------------------------------------------------------------ #$Date: 2016-03-21 04:01:44 +0200 (Mon, 21 Mar 2016) $ #$Revision: 178456 $ #$URL: file:///home/coder/svn-repositories/cod/cif/4/02/77/4027764.cif $ #------------------------------------------------------------------------------ # # This file is available in the Crystallography Open Database (COD), # http://www.crystallography.net/ # # All data on this site have been placed in the public domain by the # contributors. # data_4027764 loop_ _publ_author_name 'Marek Stancl' 'Zuzana Gargulakova' 'Vladimir Sindelar' _publ_section_title ; Glycoluril Dimer Isomerization under Aqueous Acidic Conditions Related to Cucurbituril Formation ; _journal_name_full 'Journal of Organic Chemistry' _journal_page_first 10945 _journal_page_last 10948 _journal_paper_doi 10.1021/jo302063j _journal_volume 77 _journal_year 2012 _chemical_formula_sum 'C15 H24 N12 O6' _chemical_formula_weight 468.46 _chemical_name_systematic ; ? ; _space_group_IT_number 15 _symmetry_cell_setting monoclinic _symmetry_space_group_name_Hall '-C 2yc' _symmetry_space_group_name_H-M 'C 1 2/c 1' _atom_sites_solution_hydrogens geom _atom_sites_solution_primary direct _atom_sites_solution_secondary difmap _audit_creation_method SHELXL-97 _cell_angle_alpha 90.00 _cell_angle_beta 100.587(6) _cell_angle_gamma 90.00 _cell_formula_units_Z 4 _cell_length_a 15.4616(10) _cell_length_b 8.4839(6) _cell_length_c 14.5911(10) _cell_measurement_reflns_used 1906 _cell_measurement_temperature 120(2) _cell_measurement_theta_max 27.7550 _cell_measurement_theta_min 2.9852 _cell_volume 1881.4(2) _computing_cell_refinement 'CrysAlis RED (Oxford Diffraction Ltd, 2009)' _computing_data_collection 'CrysAlis CCD (Oxford Diffraction Ltd, 2009)' _computing_data_reduction 'CrysAlis RED (Oxford Diffraction Ltd, 2009)' _computing_structure_refinement 'SHELXL-97 (Sheldrick, 1997)' _computing_structure_solution 'SHELXS-97 (Sheldrick, 1990)' _diffrn_ambient_temperature 120(2) _diffrn_detector_area_resol_mean 8.4353 _diffrn_measured_fraction_theta_full 0.998 _diffrn_measured_fraction_theta_max 0.998 _diffrn_measurement_device_type 'Xcalibur, Sapphire2, large Be window' _diffrn_measurement_method '\w scan' _diffrn_radiation_monochromator graphite _diffrn_radiation_source 'Enhance (Mo) x-ray Source' _diffrn_radiation_type MoK\a _diffrn_radiation_wavelength 0.71073 _diffrn_reflns_av_R_equivalents 0.0149 _diffrn_reflns_av_sigmaI/netI 0.0319 _diffrn_reflns_limit_h_max 17 _diffrn_reflns_limit_h_min -18 _diffrn_reflns_limit_k_max 10 _diffrn_reflns_limit_k_min -7 _diffrn_reflns_limit_l_max 17 _diffrn_reflns_limit_l_min -17 _diffrn_reflns_number 3517 _diffrn_reflns_theta_full 24.99 _diffrn_reflns_theta_max 24.99 _diffrn_reflns_theta_min 2.98 _diffrn_standards_number 0 _exptl_absorpt_coefficient_mu 0.131 _exptl_absorpt_correction_T_max 1.00000 _exptl_absorpt_correction_T_min 0.99768 _exptl_absorpt_correction_type multi-scan _exptl_absorpt_process_details 'CrysAlis RED (Oxford Diffraction Ltd, 2009)' _exptl_crystal_density_diffrn 1.654 _exptl_crystal_F_000 984 _exptl_crystal_size_max 0.40 _exptl_crystal_size_mid 0.40 _exptl_crystal_size_min 0.30 _refine_diff_density_max 0.419 _refine_diff_density_min -0.168 _refine_diff_density_rms 0.049 _refine_ls_extinction_method none _refine_ls_goodness_of_fit_ref 1.055 _refine_ls_hydrogen_treatment mixed _refine_ls_matrix_type full _refine_ls_number_parameters 162 _refine_ls_number_reflns 1654 _refine_ls_number_restraints 0 _refine_ls_restrained_S_all 1.055 _refine_ls_R_factor_all 0.0526 _refine_ls_R_factor_gt 0.0388 _refine_ls_shift/su_max 0.000 _refine_ls_shift/su_mean 0.000 _refine_ls_structure_factor_coef Fsqd _refine_ls_weighting_details 'calc w=1/[\s^2^(Fo^2^)+(0.0707P)^2^+0.0000P] where P=(Fo^2^+2Fc^2^)/3' _refine_ls_weighting_scheme calc _refine_ls_wR_factor_gt 0.1082 _refine_ls_wR_factor_ref 0.1123 _reflns_number_gt 1274 _reflns_number_total 1654 _reflns_threshold_expression >2sigma(I) _cod_data_source_file jo302063j_si_002.cif _cod_data_source_block vs41a _cod_database_code 4027764 loop_ _symmetry_equiv_pos_as_xyz 'x, y, z' '-x, y, -z+1/2' 'x+1/2, y+1/2, z' '-x+1/2, y+1/2, -z+1/2' '-x, -y, -z' 'x, -y, z-1/2' '-x+1/2, -y+1/2, -z' 'x+1/2, -y+1/2, z-1/2' loop_ _atom_site_label _atom_site_type_symbol _atom_site_fract_x _atom_site_fract_y _atom_site_fract_z _atom_site_U_iso_or_equiv _atom_site_adp_type _atom_site_occupancy _atom_site_symmetry_multiplicity _atom_site_calc_flag _atom_site_refinement_flags O1 O 0.09222(9) 0.02786(17) 0.72289(10) 0.0264(4) Uani 1 1 d . O2 O 0.09953(9) 0.31188(18) 1.03616(9) 0.0329(4) Uani 1 1 d . O3 O 0.11865(11) 0.5712(2) 0.87798(10) 0.0445(5) Uani 1 1 d . N1 N 0.17078(10) 0.1978(2) 0.82505(11) 0.0224(4) Uani 1 1 d . N2 N 0.14435(10) 0.25063(19) 0.66593(10) 0.0213(4) Uani 1 1 d . N3 N 0.18978(10) 0.4603(2) 0.77301(11) 0.0234(4) Uani 1 1 d . N4 N 0.05654(12) 0.1434(2) 0.91507(12) 0.0256(4) Uani 1 1 d . N5 N 0.04588(11) 0.2763(2) 0.51658(12) 0.0296(5) Uani 1 1 d . N6 N 0.07120(11) 0.6332(2) 0.72709(13) 0.0256(4) Uani 1 1 d . C1 C 0.13429(12) 0.1520(2) 0.73719(13) 0.0205(5) Uani 1 1 d . C2 C 0.19036(12) 0.4015(2) 0.68069(14) 0.0236(5) Uani 1 1 d . H2A H 0.2519 0.3881 0.6719 0.028 Uiso 1 1 calc R H2B H 0.1615 0.4788 0.6341 0.028 Uiso 1 1 calc R C3 C 0.22453(13) 0.3413(2) 0.84135(14) 0.0267(5) Uani 1 1 d . H3A H 0.2240 0.3818 0.9049 0.032 Uiso 1 1 calc R H3B H 0.2861 0.3168 0.8366 0.032 Uiso 1 1 calc R C4 C 0.14460(13) 0.1115(3) 0.90196(14) 0.0266(5) Uani 1 1 d . H4B H 0.1502 -0.0028 0.8907 0.032 Uiso 1 1 calc R H4C H 0.1859 0.1380 0.9602 0.032 Uiso 1 1 calc R C5 C 0.03998(13) 0.2478(3) 0.98042(13) 0.0270(5) Uani 1 1 d . C6 C 0.12052(13) 0.1958(3) 0.57006(13) 0.0266(5) Uani 1 1 d . H6B H 0.1717 0.2098 0.5388 0.032 Uiso 1 1 calc R H6C H 0.1073 0.0817 0.5705 0.032 Uiso 1 1 calc R C7 C 0.12360(13) 0.5556(2) 0.79555(14) 0.0260(5) Uani 1 1 d . C8 C 0.0000 0.7289(3) 0.7500 0.0254(7) Uani 1 2 d S H8A H 0.0234 0.7976 0.8037 0.031 Uiso 0.50 1 calc PR H8B H -0.0234 0.7976 0.6963 0.031 Uiso 0.50 1 calc PR H4N H 0.0135(13) 0.099(3) 0.8782(14) 0.022(6) Uiso 1 1 d . H5N H 0.0565(13) 0.333(2) 0.4682(15) 0.026(6) Uiso 1 1 d . H6N H 0.0787(14) 0.618(3) 0.6694(17) 0.030(6) Uiso 1 1 d . loop_ _atom_site_aniso_label _atom_site_aniso_U_11 _atom_site_aniso_U_22 _atom_site_aniso_U_33 _atom_site_aniso_U_23 _atom_site_aniso_U_13 _atom_site_aniso_U_12 O1 0.0289(7) 0.0235(8) 0.0281(8) -0.0001(7) 0.0088(6) -0.0067(6) O2 0.0332(8) 0.0420(10) 0.0214(8) -0.0075(7) -0.0005(6) 0.0034(7) O3 0.0675(11) 0.0480(11) 0.0200(9) 0.0008(8) 0.0133(7) 0.0249(9) N1 0.0255(9) 0.0234(10) 0.0186(9) 0.0016(7) 0.0045(7) 0.0009(7) N2 0.0263(9) 0.0214(10) 0.0173(9) -0.0006(7) 0.0068(7) -0.0045(7) N3 0.0248(8) 0.0232(10) 0.0225(9) -0.0023(8) 0.0047(7) 0.0011(7) N4 0.0259(9) 0.0315(11) 0.0196(9) -0.0037(8) 0.0045(7) 0.0055(8) N5 0.0309(10) 0.0391(12) 0.0196(10) 0.0072(9) 0.0066(7) -0.0112(9) N6 0.0263(9) 0.0278(11) 0.0237(10) 0.0036(9) 0.0077(8) 0.0023(8) C1 0.0174(9) 0.0217(11) 0.0232(11) -0.0021(9) 0.0056(8) 0.0037(8) C2 0.0247(10) 0.0231(12) 0.0253(11) -0.0030(9) 0.0105(8) -0.0043(9) C3 0.0251(10) 0.0266(12) 0.0260(11) -0.0068(9) -0.0015(8) 0.0005(9) C4 0.0303(11) 0.0308(13) 0.0197(11) 0.0046(10) 0.0070(8) 0.0100(10) C5 0.0345(12) 0.0303(13) 0.0167(11) 0.0046(9) 0.0058(9) 0.0086(10) C6 0.0295(11) 0.0317(13) 0.0209(11) -0.0043(10) 0.0103(8) -0.0078(10) C7 0.0288(10) 0.0226(12) 0.0277(12) -0.0013(10) 0.0082(9) -0.0014(9) C8 0.0293(15) 0.0155(15) 0.0322(17) 0.000 0.0074(12) 0.000 loop_ _atom_type_symbol _atom_type_description _atom_type_scat_dispersion_real _atom_type_scat_dispersion_imag _atom_type_scat_source C C 0.0033 0.0016 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' H H 0.0000 0.0000 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' N N 0.0061 0.0033 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' O O 0.0106 0.0060 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' loop_ _geom_angle_atom_site_label_1 _geom_angle_atom_site_label_2 _geom_angle_atom_site_label_3 _geom_angle _geom_angle_site_symmetry_1 _geom_angle_site_symmetry_3 C1 N1 C4 117.15(17) . . C1 N1 C3 120.96(16) . . C4 N1 C3 121.37(16) . . C1 N2 C6 119.46(16) . . C1 N2 C2 123.03(16) . . C6 N2 C2 116.87(15) . . C7 N3 C2 123.70(16) . . C7 N3 C3 115.95(16) . . C2 N3 C3 109.73(16) . . C5 N4 C4 121.46(19) . . C5 N5 C6 126.08(18) 2_556 . C7 N6 C8 118.87(16) . . O1 C1 N1 121.18(18) . . O1 C1 N2 121.60(17) . . N1 C1 N2 117.20(17) . . N3 C2 N2 110.81(16) . . N3 C3 N1 109.77(15) . . N4 C4 N1 114.35(16) . . O2 C5 N5 120.99(19) . 2_556 O2 C5 N4 122.28(19) . . N5 C5 N4 116.71(19) 2_556 . N5 C6 N2 113.91(17) . . O3 C7 N6 122.74(19) . . O3 C7 N3 118.44(19) . . N6 C7 N3 118.72(18) . . N6 C8 N6 112.1(2) 2_556 . loop_ _geom_bond_atom_site_label_1 _geom_bond_atom_site_label_2 _geom_bond_distance _geom_bond_site_symmetry_2 O1 C1 1.235(2) . O2 C5 1.237(2) . O3 C7 1.226(2) . N1 C1 1.359(2) . N1 C4 1.458(3) . N1 C3 1.469(3) . N2 C1 1.366(2) . N2 C6 1.456(2) . N2 C2 1.461(3) . N3 C7 1.390(3) . N3 C2 1.438(2) . N3 C3 1.451(2) . N4 C5 1.360(3) . N4 C4 1.435(2) . N5 C5 1.358(2) 2_556 N5 C6 1.441(3) . N6 C7 1.338(3) . N6 C8 1.456(2) . C5 N5 1.358(2) 2_556 C8 N6 1.456(2) 2_556