#------------------------------------------------------------------------------ #$Date: 2012-03-13 02:27:18 +0200 (Tue, 13 Mar 2012) $ #$Revision: 41373 $ #$URL: file:///home/coder/svn-repositories/cod/cif/4/50/31/4503137.cif $ #------------------------------------------------------------------------------ # # This file is available in the Crystallography Open Database (COD), # http://www.crystallography.net/ # # All data on this site have been placed in the public domain by the # contributors. # data_4503137 loop_ _publ_author_name 'Guiry, Kevin P.' 'Coles, Simon J.' 'Moynihan, Humphrey A.' 'Lawrence, Simon E.' _publ_section_title ; Effect of 1-Deoxy-d-lactose upon the Crystallization ofd-Lactose ; _journal_issue 11 _journal_name_full 'Crystal Growth & Design' _journal_page_first 3927 _journal_volume 8 _journal_year 2008 _chemical_absolute_configuration syn _chemical_formula_moiety 'C12 H22 O10' _chemical_formula_sum 'C12 H22 O10' _chemical_formula_weight 326.30 _chemical_melting_point 208.0(10) _chemical_name_common 1-deoxylactose _chemical_name_systematic ; ? ; _space_group_IT_number 4 _symmetry_cell_setting monoclinic _symmetry_space_group_name_Hall 'P 2yb' _symmetry_space_group_name_H-M 'P 1 21 1' _atom_sites_solution_hydrogens geom _atom_sites_solution_primary direct _atom_sites_solution_secondary difmap _audit_creation_method SHELXL-97 _cell_angle_alpha 90.00 _cell_angle_beta 103.1590(10) _cell_angle_gamma 90.00 _cell_formula_units_Z 2 _cell_length_a 4.69300(10) _cell_length_b 19.9373(4) _cell_length_c 7.5503(2) _cell_measurement_reflns_used 1617 _cell_measurement_temperature 120(2) _cell_measurement_theta_max 27.48 _cell_measurement_theta_min 1.00 _cell_volume 687.90(3) _computing_cell_refinement 'DENZO (Otwinowski & Minor, 1997) & COLLECT (Hooft, R.W.W., 1998)' _computing_data_collection 'COLLECT (Hooft, R.W.W., 1998)' _computing_data_reduction 'DENZO (Otwinowski & Minor, 1997) & COLLECT (Hooft, R.W.W., 1998)' _computing_molecular_graphics 'PLATON (Spek, 2002)' _computing_publication_material 'SHELXL--97; PLATON' _computing_structure_refinement 'SHELXL-97 (Sheldrick, 1997)' _computing_structure_solution 'SHELXS (Sheldrick, 1990)' _diffrn_ambient_temperature 120(2) _diffrn_detector_area_resol_mean 9.091 _diffrn_measured_fraction_theta_full 0.998 _diffrn_measured_fraction_theta_max 0.998 _diffrn_measurement_device_type 'Bruker-Nonius 95mm CCD camera on \k-goniostat' _diffrn_measurement_method '\f & \w scans' _diffrn_radiation_monochromator graphite _diffrn_radiation_source 'Bruker-Nonius FR591 rotating anode' _diffrn_radiation_type MoK\a _diffrn_radiation_wavelength 0.71073 _diffrn_reflns_av_R_equivalents 0.0401 _diffrn_reflns_av_sigmaI/netI 0.0203 _diffrn_reflns_limit_h_max 6 _diffrn_reflns_limit_h_min 0 _diffrn_reflns_limit_k_max 25 _diffrn_reflns_limit_k_min 0 _diffrn_reflns_limit_l_max 9 _diffrn_reflns_limit_l_min -9 _diffrn_reflns_number 1614 _diffrn_reflns_theta_full 27.47 _diffrn_reflns_theta_max 27.47 _diffrn_reflns_theta_min 2.77 _exptl_absorpt_coefficient_mu 0.139 _exptl_absorpt_correction_T_max 0.9863 _exptl_absorpt_correction_T_min 0.9531 _exptl_absorpt_correction_type multi-scan _exptl_absorpt_process_details 'SADABS V2.10(Sheldrick, G.M., 2003)' _exptl_crystal_colour colourless _exptl_crystal_density_diffrn 1.575 _exptl_crystal_density_method 'not measured' _exptl_crystal_description slab _exptl_crystal_F_000 348 _exptl_crystal_size_max 0.35 _exptl_crystal_size_mid 0.30 _exptl_crystal_size_min 0.10 _refine_diff_density_max 0.212 _refine_diff_density_min -0.174 _refine_diff_density_rms 0.042 _refine_ls_abs_structure_details 'Flack H D (1983), Acta Cryst. A39, 876-881' _refine_ls_abs_structure_Flack -0.3(9) _refine_ls_extinction_coef 0.026(5) _refine_ls_extinction_expression Fc^*^=kFc[1+0.001xFc^2^\l^3^/sin(2\q)]^-1/4^ _refine_ls_extinction_method SHELXL _refine_ls_goodness_of_fit_ref 1.066 _refine_ls_hydrogen_treatment constr _refine_ls_matrix_type full _refine_ls_number_parameters 207 _refine_ls_number_reflns 1614 _refine_ls_number_restraints 1 _refine_ls_restrained_S_all 1.066 _refine_ls_R_factor_all 0.0300 _refine_ls_R_factor_gt 0.0269 _refine_ls_shift/su_max 0.000 _refine_ls_shift/su_mean 0.000 _refine_ls_structure_factor_coef Fsqd _refine_ls_weighting_details 'calc w=1/[\s^2^(Fo^2^)+(0.0353P)^2^+0.2005P] where P=(Fo^2^+2Fc^2^)/3' _refine_ls_weighting_scheme calc _refine_ls_wR_factor_gt 0.0653 _refine_ls_wR_factor_ref 0.0676 _reflns_number_gt 1528 _reflns_number_total 1614 _reflns_threshold_expression >2sigma(I) _[local]_cod_data_source_file cg070598n_si_001.cif _[local]_cod_data_source_block 1-deoxy-D-lactose _[local]_cod_cif_authors_sg_H-M 'P 21' _cod_depositor_comments ; The following automatic conversions were performed: '_chemical_melting_point' value '207-209' was changed to '208.0(10)' - the average value was taken and precision was estimated. '_symmetry_cell_setting' value 'Monoclinic' changed to 'monoclinic' according to /home/saulius/struct/CIF-dictionaries/cif_core.dic dictionary named 'cif_core.dic' version 2.4.1 from 2010-06-29. Automatic conversion script Id: cif_fix_values 1715 2011-07-08 13:25:40Z adriana ; _cod_database_code 4503137 loop_ _symmetry_equiv_pos_as_xyz 'x, y, z' '-x, y+1/2, -z' loop_ _atom_site_label _atom_site_type_symbol _atom_site_fract_x _atom_site_fract_y _atom_site_fract_z _atom_site_U_iso_or_equiv _atom_site_adp_type _atom_site_occupancy _atom_site_symmetry_multiplicity _atom_site_calc_flag _atom_site_refinement_flags O1 O 0.7577(3) 0.84534(7) 0.54983(19) 0.0172(3) Uani 1 1 d . C1 C 0.5751(5) 0.82856(10) 0.3783(3) 0.0182(4) Uani 1 1 d . H1A H 0.5786 0.8653 0.2907 0.022 Uiso 1 1 calc R H1B H 0.3710 0.8229 0.3908 0.022 Uiso 1 1 calc R C2 C 0.6804(4) 0.76409(10) 0.3075(3) 0.0153(4) Uani 1 1 d . H2 H 0.8829 0.7717 0.2902 0.018 Uiso 1 1 calc R O2 O 0.4941(3) 0.74964(8) 0.13415(19) 0.0202(3) Uani 1 1 d . H2A H 0.4119 0.7124 0.1384 0.030 Uiso 1 1 calc R C3 C 0.6918(5) 0.70733(10) 0.4431(3) 0.0146(4) Uani 1 1 d . H3 H 0.4875 0.6932 0.4434 0.017 Uiso 1 1 calc R O3 O 0.8392(3) 0.65278(7) 0.37882(19) 0.0192(3) Uani 1 1 d . H3A H 0.7928 0.6166 0.4219 0.029 Uiso 1 1 calc R C4 C 0.8464(4) 0.72908(10) 0.6359(3) 0.0136(4) Uani 1 1 d . H4 H 1.0618 0.7324 0.6449 0.016 Uiso 1 1 calc R O4 O 0.7911(3) 0.68318(7) 0.77171(19) 0.0142(3) Uani 1 1 d . C5 C 0.7299(4) 0.79675(10) 0.6837(3) 0.0138(4) Uani 1 1 d . H5 H 0.5169 0.7913 0.6801 0.017 Uiso 1 1 calc R C6 C 0.8765(5) 0.82454(10) 0.8686(3) 0.0160(4) Uani 1 1 d . H6A H 0.7725 0.8657 0.8912 0.019 Uiso 1 1 calc R H6B H 0.8587 0.7913 0.9630 0.019 Uiso 1 1 calc R O6 O 1.1793(3) 0.84003(8) 0.8859(2) 0.0182(3) Uani 1 1 d . H6 H 1.2824 0.8134 0.9598 0.027 Uiso 1 1 calc R C1' C 0.9496(4) 0.62348(10) 0.7931(3) 0.0135(4) Uani 1 1 d . H1' H 1.1467 0.6306 0.7666 0.016 Uiso 1 1 calc R O1' O 0.7852(3) 0.57534(7) 0.66989(18) 0.0139(3) Uani 1 1 d . C2' C 0.9801(5) 0.59649(10) 0.9856(3) 0.0132(4) Uani 1 1 d . H2' H 0.7816 0.5897 1.0102 0.016 Uiso 1 1 calc R O2' O 1.1426(3) 0.64205(7) 1.11511(19) 0.0177(3) Uani 1 1 d . H2'1 H 1.0558 0.6478 1.1997 0.027 Uiso 1 1 calc R C3' C 1.1421(4) 0.52925(10) 1.0005(3) 0.0135(4) Uani 1 1 d . H3' H 1.3450 0.5375 0.9846 0.016 Uiso 1 1 calc R O3' O 1.1614(3) 0.49996(8) 1.17526(19) 0.0167(3) Uani 1 1 d . H3'1 H 1.3360 0.5009 1.2346 0.025 Uiso 1 1 calc R C4' C 0.9921(4) 0.47970(10) 0.8549(3) 0.0133(4) Uani 1 1 d . H4' H 1.1214 0.4397 0.8565 0.016 Uiso 1 1 calc R O4' O 0.7186(3) 0.45836(7) 0.88653(19) 0.0160(3) Uani 1 1 d . H4'1 H 0.7471 0.4287 0.9678 0.024 Uiso 1 1 calc R C5' C 0.9451(4) 0.51385(9) 0.6698(3) 0.0131(4) Uani 1 1 d . H5' H 1.1403 0.5244 0.6445 0.016 Uiso 1 1 calc R C6' C 0.7722(4) 0.47224(10) 0.5152(3) 0.0152(4) Uani 1 1 d . H6'1 H 0.8811 0.4306 0.5029 0.018 Uiso 1 1 calc R H6'2 H 0.5823 0.4595 0.5416 0.018 Uiso 1 1 calc R O6' O 0.7223(3) 0.50943(7) 0.34798(19) 0.0172(3) Uani 1 1 d . H6' H 0.8597 0.5022 0.2960 0.026 Uiso 1 1 calc R loop_ _atom_site_aniso_label _atom_site_aniso_U_11 _atom_site_aniso_U_22 _atom_site_aniso_U_33 _atom_site_aniso_U_23 _atom_site_aniso_U_13 _atom_site_aniso_U_12 O1 0.0228(7) 0.0118(7) 0.0157(7) 0.0015(6) 0.0014(6) -0.0017(6) C1 0.0223(10) 0.0138(10) 0.0161(9) 0.0012(8) -0.0004(8) 0.0008(8) C2 0.0169(10) 0.0151(10) 0.0124(9) 0.0011(7) 0.0005(7) -0.0020(7) O2 0.0255(8) 0.0175(7) 0.0143(7) 0.0027(6) -0.0023(6) -0.0066(6) C3 0.0184(9) 0.0108(9) 0.0143(9) -0.0021(7) 0.0033(7) -0.0003(7) O3 0.0323(8) 0.0096(7) 0.0178(7) -0.0010(6) 0.0099(6) 0.0014(6) C4 0.0157(9) 0.0117(9) 0.0140(9) 0.0006(7) 0.0043(7) -0.0002(7) O4 0.0197(7) 0.0096(6) 0.0141(6) 0.0023(5) 0.0058(5) 0.0020(5) C5 0.0158(9) 0.0103(9) 0.0151(9) 0.0018(7) 0.0033(7) 0.0003(7) C6 0.0186(10) 0.0139(10) 0.0161(9) -0.0022(7) 0.0050(8) 0.0000(7) O6 0.0172(7) 0.0166(7) 0.0197(7) 0.0003(6) 0.0017(5) -0.0017(6) C1' 0.0163(9) 0.0097(8) 0.0141(9) -0.0009(7) 0.0029(7) -0.0003(7) O1' 0.0167(7) 0.0086(6) 0.0148(6) -0.0010(5) 0.0002(5) 0.0016(5) C2' 0.0146(9) 0.0116(9) 0.0126(8) -0.0009(7) 0.0013(7) -0.0037(7) O2' 0.0215(7) 0.0172(8) 0.0142(7) -0.0041(6) 0.0033(6) -0.0063(6) C3' 0.0145(9) 0.0140(9) 0.0110(8) 0.0010(7) 0.0011(7) 0.0003(7) O3' 0.0166(7) 0.0193(7) 0.0126(7) 0.0039(5) -0.0001(5) -0.0005(6) C4' 0.0135(9) 0.0130(9) 0.0129(9) 0.0007(7) 0.0018(7) 0.0001(7) O4' 0.0153(7) 0.0143(7) 0.0178(7) 0.0032(5) 0.0024(5) -0.0016(5) C5' 0.0159(9) 0.0106(9) 0.0126(9) 0.0001(7) 0.0029(7) 0.0025(7) C6' 0.0194(10) 0.0130(9) 0.0124(9) 0.0008(7) 0.0018(7) 0.0000(7) O6' 0.0184(7) 0.0206(8) 0.0118(6) 0.0022(5) 0.0018(5) 0.0029(6) loop_ _atom_type_symbol _atom_type_description _atom_type_scat_dispersion_real _atom_type_scat_dispersion_imag _atom_type_scat_source C C 0.0033 0.0016 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' H H 0.0000 0.0000 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' O O 0.0106 0.0060 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' loop_ _geom_angle_atom_site_label_1 _geom_angle_atom_site_label_2 _geom_angle_atom_site_label_3 _geom_angle C1 O1 C5 110.63(15) O1 C1 C2 110.08(16) O1 C1 H1A 109.6 C2 C1 H1A 109.6 O1 C1 H1B 109.6 C2 C1 H1B 109.6 H1A C1 H1B 108.2 O2 C2 C1 108.25(16) O2 C2 C3 112.81(16) C1 C2 C3 111.00(15) O2 C2 H2 108.2 C1 C2 H2 108.2 C3 C2 H2 108.2 C2 O2 H2A 109.5 O3 C3 C2 106.46(15) O3 C3 C4 112.09(16) C2 C3 C4 111.43(16) O3 C3 H3 108.9 C2 C3 H3 108.9 C4 C3 H3 108.9 C3 O3 H3A 109.5 O4 C4 C5 105.07(15) O4 C4 C3 111.91(16) C5 C4 C3 110.89(15) O4 C4 H4 109.6 C5 C4 H4 109.6 C3 C4 H4 109.6 C1' O4 C4 116.55(15) O1 C5 C6 108.01(16) O1 C5 C4 109.65(15) C6 C5 C4 115.40(16) O1 C5 H5 107.8 C6 C5 H5 107.8 C4 C5 H5 107.8 O6 C6 C5 113.34(16) O6 C6 H6A 108.9 C5 C6 H6A 108.9 O6 C6 H6B 108.9 C5 C6 H6B 108.9 H6A C6 H6B 107.7 C6 O6 H6 109.5 O4 C1' O1' 107.61(15) O4 C1' C2' 110.09(16) O1' C1' C2' 107.56(15) O4 C1' H1' 110.5 O1' C1' H1' 110.5 C2' C1' H1' 110.5 C1' O1' C5' 111.55(14) O2' C2' C1' 110.42(15) O2' C2' C3' 109.20(16) C1' C2' C3' 108.41(16) O2' C2' H2' 109.6 C1' C2' H2' 109.6 C3' C2' H2' 109.6 C2' O2' H2'1 109.5 O3' C3' C4' 108.85(16) O3' C3' C2' 110.60(15) C4' C3' C2' 111.94(15) O3' C3' H3' 108.5 C4' C3' H3' 108.5 C2' C3' H3' 108.5 C3' O3' H3'1 109.5 O4' C4' C5' 109.86(15) O4' C4' C3' 111.01(15) C5' C4' C3' 108.53(16) O4' C4' H4' 109.1 C5' C4' H4' 109.1 C3' C4' H4' 109.1 C4' O4' H4'1 109.5 O1' C5' C6' 106.27(15) O1' C5' C4' 110.30(15) C6' C5' C4' 113.80(16) O1' C5' H5' 108.8 C6' C5' H5' 108.8 C4' C5' H5' 108.8 O6' C6' C5' 110.34(15) O6' C6' H6'1 109.6 C5' C6' H6'1 109.6 O6' C6' H6'2 109.6 C5' C6' H6'2 109.6 H6'1 C6' H6'2 108.1 C6' O6' H6' 109.5 loop_ _geom_bond_atom_site_label_1 _geom_bond_atom_site_label_2 _geom_bond_distance O1 C1 1.421(2) O1 C5 1.427(2) C1 C2 1.517(3) C1 H1A 0.9900 C1 H1B 0.9900 C2 O2 1.428(2) C2 C3 1.519(3) C2 H2 1.0000 O2 H2A 0.8400 C3 O3 1.431(2) C3 C4 1.533(3) C3 H3 1.0000 O3 H3A 0.8400 C4 O4 1.441(2) C4 C5 1.530(3) C4 H4 1.0000 O4 C1' 1.393(2) C5 C6 1.514(3) C5 H5 1.0000 C6 O6 1.431(2) C6 H6A 0.9900 C6 H6B 0.9900 O6 H6 0.8400 C1' O1' 1.434(2) C1' C2' 1.526(3) C1' H1' 1.0000 O1' C5' 1.437(2) C2' O2' 1.422(2) C2' C3' 1.532(3) C2' H2' 1.0000 O2' H2'1 0.8400 C3' O3' 1.427(2) C3' C4' 1.526(3) C3' H3' 1.0000 O3' H3'1 0.8400 C4' O4' 1.423(2) C4' C5' 1.525(3) C4' H4' 1.0000 O4' H4'1 0.8400 C5' C6' 1.510(3) C5' H5' 1.0000 C6' O6' 1.436(2) C6' H6'1 0.9900 C6' H6'2 0.9900 O6' H6' 0.8400 loop_ _geom_hbond_atom_site_label_D _geom_hbond_atom_site_label_H _geom_hbond_atom_site_label_A _geom_hbond_distance_DH _geom_hbond_distance_HA _geom_hbond_distance_DA _geom_hbond_angle_DHA _geom_hbond_site_symmetry_A O2 H2A O2' 0.84 1.87 2.690(2) 164.9 1_454 O3 H3A O1' 0.84 2.05 2.744(2) 139.2 . O3 H3A O6' 0.84 2.21 2.909(2) 140.2 . O6 H6 O2 0.84 1.93 2.772(2) 175.9 1_656 O2' H2'1 O3 0.84 1.87 2.707(2) 174.0 1_556 O3' H3'1 O6' 0.84 1.83 2.665(2) 174.2 1_656 O4' H4'1 O6 0.84 2.07 2.894(2) 165.7 2_747 O6' H6' O3' 0.84 1.85 2.685(2) 171.5 1_554 loop_ _geom_torsion_atom_site_label_1 _geom_torsion_atom_site_label_2 _geom_torsion_atom_site_label_3 _geom_torsion_atom_site_label_4 _geom_torsion C5 O1 C1 C2 -66.0(2) O1 C1 C2 O2 -179.13(16) O1 C1 C2 C3 56.6(2) O2 C2 C3 O3 68.0(2) C1 C2 C3 O3 -170.35(15) O2 C2 C3 C4 -169.54(16) C1 C2 C3 C4 -47.8(2) O3 C3 C4 O4 -76.4(2) C2 C3 C4 O4 164.41(16) O3 C3 C4 C5 166.65(15) C2 C3 C4 C5 47.4(2) C5 C4 O4 C1' -161.67(15) C3 C4 O4 C1' 77.9(2) C1 O1 C5 C6 -168.16(15) C1 O1 C5 C4 65.3(2) O4 C4 C5 O1 -176.43(15) C3 C4 C5 O1 -55.3(2) O4 C4 C5 C6 61.4(2) C3 C4 C5 C6 -177.54(16) O1 C5 C6 O6 -58.7(2) C4 C5 C6 O6 64.4(2) C4 O4 C1' O1' -89.03(18) C4 O4 C1' C2' 154.02(16) O4 C1' O1' C5' 174.45(14) C2' C1' O1' C5' -66.96(18) O4 C1' C2' O2' -63.2(2) O1' C1' C2' O2' 179.86(15) O4 C1' C2' C3' 177.24(16) O1' C1' C2' C3' 60.27(19) O2' C2' C3' O3' 63.0(2) C1' C2' C3' O3' -176.65(15) O2' C2' C3' C4' -175.43(15) C1' C2' C3' C4' -55.1(2) O3' C3' C4' O4' 53.7(2) C2' C3' C4' O4' -68.9(2) O3' C3' C4' C5' 174.49(15) C2' C3' C4' C5' 51.9(2) C1' O1' C5' C6' -171.09(15) C1' O1' C5' C4' 65.11(19) O4' C4' C5' O1' 66.3(2) C3' C4' C5' O1' -55.20(19) O4' C4' C5' C6' -53.0(2) C3' C4' C5' C6' -174.53(15) O1' C5' C6' O6' 54.86(19) C4' C5' C6' O6' 176.46(15)