#------------------------------------------------------------------------------ #$Date: 2013-05-07 19:24:52 +0300 (Tue, 07 May 2013) $ #$Revision: 85538 $ #$URL: file:///home/coder/svn-repositories/cod/cif/4/50/74/4507489.cif $ #------------------------------------------------------------------------------ # # This file is available in the Crystallography Open Database (COD), # http://www.crystallography.net/ # # All data on this site have been placed in the public domain by the # contributors. # data_4507489 loop_ _publ_author_name 'Thompson, Laura J.' 'Elias, Norhanida' 'Male, Louise' 'Tremayne, Maryjane' _publ_section_title ; Supramolecular Behavior of Adenine with Succinic, Fumaric, and Maleic Acids: Tautomerism, Cocrystallization, Salt Formation, and Solvation ; _journal_issue 4 _journal_name_full 'Crystal Growth & Design' _journal_page_first 1464 _journal_paper_doi 10.1021/cg301561j _journal_volume 13 _journal_year 2013 _chemical_formula_moiety 'C5 H5 N5, C4 H6 O4' _chemical_formula_sum 'C9 H11 N5 O4' _chemical_formula_weight 253.23 _chemical_name_systematic ; Adenine:succinic acid ; _space_group_IT_number 14 _symmetry_cell_setting monoclinic _symmetry_space_group_name_Hall '-P 2yn' _symmetry_space_group_name_H-M 'P 1 21/n 1' _atom_sites_solution_hydrogens geom _atom_sites_solution_primary direct _atom_sites_solution_secondary difmap _audit_creation_method SHELXL-97 _cell_angle_alpha 90.00 _cell_angle_beta 92.398(3) _cell_angle_gamma 90.00 _cell_formula_units_Z 4 _cell_length_a 9.4902(4) _cell_length_b 5.3041(3) _cell_length_c 21.2846(8) _cell_measurement_reflns_used 12516 _cell_measurement_temperature 120(2) _cell_measurement_theta_max 27.48 _cell_measurement_theta_min 2.91 _cell_volume 1070.46(9) _computing_cell_refinement 'DENZO (Otwinowski & Minor, 1997) & COLLECT (Hooft, R.W.W., 1998)' _computing_data_collection 'COLLECT (Hooft, R.W.W., 1998)' _computing_data_reduction 'DENZO (Otwinowski & Minor, 1997) & COLLECT (Hooft, R.W.W., 1998)' _computing_molecular_graphics 'Ortep-3 for Windows (Farrugia, 1997), Diamond 3.0 (Brandenburg, 2004)' _computing_publication_material 'WinGX (Farrugia, 1999)' _computing_structure_refinement 'SHELXL-97 (Sheldrick, 2008)' _computing_structure_solution 'SHELXS-97 (Sheldrick, 2008)' _diffrn_ambient_temperature 120(2) _diffrn_detector_area_resol_mean '4096x4096pixels / 62x62mm' _diffrn_measured_fraction_theta_full 0.991 _diffrn_measured_fraction_theta_max 0.991 _diffrn_measurement_device_type 'Bruker-Nonius APEX II CCD camera on \k-goniostat' _diffrn_measurement_method '\f & \w scans' _diffrn_radiation_monochromator '10cm confocal mirrors' _diffrn_radiation_source 'Bruker-Nonius FR591 rotating anode' _diffrn_radiation_type MoK\a _diffrn_radiation_wavelength 0.71073 _diffrn_reflns_av_R_equivalents 0.0485 _diffrn_reflns_av_sigmaI/netI 0.0495 _diffrn_reflns_limit_h_max 12 _diffrn_reflns_limit_h_min -12 _diffrn_reflns_limit_k_max 6 _diffrn_reflns_limit_k_min -6 _diffrn_reflns_limit_l_max 27 _diffrn_reflns_limit_l_min -27 _diffrn_reflns_number 8933 _diffrn_reflns_theta_full 27.48 _diffrn_reflns_theta_max 27.48 _diffrn_reflns_theta_min 3.52 _exptl_absorpt_coefficient_mu 0.126 _exptl_absorpt_correction_T_max 0.9925 _exptl_absorpt_correction_T_min 0.9875 _exptl_absorpt_correction_type multi-scan _exptl_absorpt_process_details 'SADABS 2007/2 (Sheldrick, G.M., 2007)' _exptl_crystal_colour Colourless _exptl_crystal_density_diffrn 1.571 _exptl_crystal_density_method 'not measured' _exptl_crystal_description Fragment _exptl_crystal_F_000 528 _exptl_crystal_size_max 0.10 _exptl_crystal_size_mid 0.08 _exptl_crystal_size_min 0.06 _refine_diff_density_max 0.278 _refine_diff_density_min -0.276 _refine_diff_density_rms 0.066 _refine_ls_extinction_method none _refine_ls_goodness_of_fit_ref 1.114 _refine_ls_hydrogen_treatment constr _refine_ls_matrix_type full _refine_ls_number_parameters 165 _refine_ls_number_reflns 2426 _refine_ls_number_restraints 0 _refine_ls_restrained_S_all 1.114 _refine_ls_R_factor_all 0.0817 _refine_ls_R_factor_gt 0.0586 _refine_ls_shift/su_max 0.000 _refine_ls_shift/su_mean 0.000 _refine_ls_structure_factor_coef Fsqd _refine_ls_weighting_details 'calc w=1/[\s^2^(Fo^2^)+(0.0213P)^2^+1.5496P] where P=(Fo^2^+2Fc^2^)/3' _refine_ls_weighting_scheme calc _refine_ls_wR_factor_gt 0.1123 _refine_ls_wR_factor_ref 0.1257 _reflns_number_gt 1898 _reflns_number_total 2426 _reflns_threshold_expression >2\s(I) _[local]_cod_data_source_file cg301561j_si_004.cif _[local]_cod_data_source_block 1 _[local]_cod_cif_authors_sg_H-M 'P 2(1)/n' _cod_depositor_comments ; The following automatic conversions were performed: '_symmetry_cell_setting' value 'Monoclinic' changed to 'monoclinic' according to /home/saulius/struct/CIF-dictionaries/cif_core.dic dictionary named 'cif_core.dic' version 2.4.2 from 2011-04-26. '_exptl_absorpt_correction_type' value 'Multi-scan' changed to 'multi-scan' according to /home/saulius/struct/CIF-dictionaries/cif_core.dic dictionary named 'cif_core.dic' version 2.4.2 from 2011-04-26. Automatic conversion script Id: cif_fix_values 1891 2012-01-12 08:04:46Z andrius ; _cod_database_code 4507489 loop_ _symmetry_equiv_pos_as_xyz 'x, y, z' '-x+1/2, y+1/2, -z+1/2' '-x, -y, -z' 'x-1/2, -y-1/2, z-1/2' loop_ _atom_site_label _atom_site_type_symbol _atom_site_fract_x _atom_site_fract_y _atom_site_fract_z _atom_site_U_iso_or_equiv _atom_site_adp_type _atom_site_occupancy _atom_site_symmetry_multiplicity _atom_site_calc_flag _atom_site_refinement_flags C2 C -0.0439(3) 1.3851(5) 0.14573(10) 0.0226(5) Uani 1 1 d . H2 H -0.1080 1.4996 0.1635 0.027 Uiso 1 1 calc R C4 C 0.0703(2) 1.2459(4) 0.06439(10) 0.0200(5) Uani 1 1 d . C5 C 0.1343(2) 1.0537(4) 0.09891(10) 0.0200(5) Uani 1 1 d . C6 C 0.1031(2) 1.0377(4) 0.16282(10) 0.0194(5) Uani 1 1 d . C8 C 0.2094(2) 1.0275(5) 0.00602(11) 0.0224(5) Uani 1 1 d . H8 H 0.2576 0.9731 -0.0298 0.027 Uiso 1 1 calc R N1 N 0.0117(2) 1.2109(4) 0.18503(8) 0.0200(4) Uani 1 1 d . N3 N -0.0212(2) 1.4189(4) 0.08531(9) 0.0220(4) Uani 1 1 d . N6 N 0.1597(2) 0.8639(4) 0.20144(9) 0.0233(5) Uani 1 1 d . H6A H 0.1381 0.8613 0.2412 0.028 Uiso 1 1 calc R H6B H 0.2188 0.7519 0.1871 0.028 Uiso 1 1 calc R N7 N 0.2231(2) 0.9159(4) 0.06160(9) 0.0221(4) Uani 1 1 d . N9 N 0.1203(2) 1.2262(4) 0.00513(9) 0.0208(4) Uani 1 1 d . H9 H 0.0985 1.3240 -0.0272 0.025 Uiso 1 1 calc R C10 C 0.4254(2) 0.4245(4) 0.12088(10) 0.0190(5) Uani 1 1 d . C11 C 0.5371(2) 0.2255(4) 0.11922(10) 0.0199(5) Uani 1 1 d . H11A H 0.6291 0.3074 0.1128 0.024 Uiso 1 1 calc R H11B H 0.5162 0.1132 0.0828 0.024 Uiso 1 1 calc R C12 C 0.5491(2) 0.0661(4) 0.17889(10) 0.0193(5) Uani 1 1 d . H12A H 0.5756 0.1758 0.2151 0.023 Uiso 1 1 calc R H12B H 0.4562 -0.0101 0.1867 0.023 Uiso 1 1 calc R C13 C 0.6574(2) -0.1403(4) 0.17380(10) 0.0192(5) Uani 1 1 d . O10 O 0.4104(2) 0.5505(4) 0.06842(8) 0.0341(5) Uani 1 1 d . H10 H 0.3468 0.6592 0.0717 0.051 Uiso 1 1 calc R O11 O 0.35490(17) 0.4665(3) 0.16634(7) 0.0235(4) Uani 1 1 d . O13 O 0.65908(17) -0.3187(3) 0.21772(7) 0.0216(4) Uani 1 1 d . H13 H 0.5963 -0.2886 0.2434 0.032 Uiso 1 1 calc R O14 O 0.74113(19) -0.1480(3) 0.13274(8) 0.0291(4) Uani 1 1 d . loop_ _atom_site_aniso_label _atom_site_aniso_U_11 _atom_site_aniso_U_22 _atom_site_aniso_U_33 _atom_site_aniso_U_23 _atom_site_aniso_U_13 _atom_site_aniso_U_12 C2 0.0246(12) 0.0240(12) 0.0192(11) -0.0018(9) 0.0013(9) 0.0008(10) C4 0.0223(12) 0.0203(12) 0.0173(11) -0.0005(9) 0.0003(9) -0.0012(10) C5 0.0200(12) 0.0208(12) 0.0191(11) -0.0023(9) 0.0009(9) -0.0016(10) C6 0.0203(11) 0.0192(12) 0.0188(11) -0.0003(9) 0.0003(9) -0.0047(9) C8 0.0245(12) 0.0228(12) 0.0201(11) 0.0009(10) 0.0034(9) 0.0046(10) N1 0.0222(10) 0.0197(10) 0.0181(9) -0.0014(8) 0.0028(7) 0.0003(8) N3 0.0263(11) 0.0223(11) 0.0175(9) 0.0018(8) 0.0023(8) 0.0019(9) N6 0.0314(12) 0.0242(11) 0.0145(9) 0.0043(8) 0.0033(8) 0.0063(9) N7 0.0230(10) 0.0218(10) 0.0215(10) 0.0015(8) 0.0025(8) 0.0048(9) N9 0.0249(10) 0.0206(10) 0.0169(9) 0.0037(8) 0.0021(7) 0.0053(8) C10 0.0207(11) 0.0199(11) 0.0164(10) -0.0001(9) 0.0008(8) -0.0005(9) C11 0.0221(12) 0.0198(12) 0.0180(11) 0.0007(9) 0.0035(9) 0.0043(10) C12 0.0208(12) 0.0200(12) 0.0175(11) -0.0002(9) 0.0044(8) 0.0018(9) C13 0.0203(12) 0.0194(12) 0.0178(11) 0.0002(9) -0.0002(9) 0.0016(9) O10 0.0425(12) 0.0381(11) 0.0227(9) 0.0120(8) 0.0117(8) 0.0245(9) O11 0.0270(9) 0.0257(9) 0.0182(8) 0.0004(7) 0.0042(7) 0.0049(7) O13 0.0248(9) 0.0208(9) 0.0196(8) 0.0034(7) 0.0062(6) 0.0038(7) O14 0.0316(10) 0.0326(10) 0.0239(9) 0.0066(8) 0.0111(7) 0.0117(8) loop_ _atom_type_symbol _atom_type_description _atom_type_scat_dispersion_real _atom_type_scat_dispersion_imag _atom_type_scat_source C C 0.0033 0.0016 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' H H 0.0000 0.0000 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' N N 0.0061 0.0033 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' O O 0.0106 0.0060 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' loop_ _geom_angle_atom_site_label_1 _geom_angle_atom_site_label_2 _geom_angle_atom_site_label_3 _geom_angle N3 C2 N1 128.6(2) N3 C2 H2 115.7 N1 C2 H2 115.7 N3 C4 N9 127.4(2) N3 C4 C5 126.8(2) N9 C4 C5 105.8(2) C4 C5 N7 110.34(19) C4 C5 C6 116.9(2) N7 C5 C6 132.7(2) N6 C6 N1 119.9(2) N6 C6 C5 122.8(2) N1 C6 C5 117.2(2) N7 C8 N9 113.5(2) N7 C8 H8 123.2 N9 C8 H8 123.2 C2 N1 C6 119.23(19) C2 N3 C4 111.1(2) C6 N6 H6A 120.0 C6 N6 H6B 120.0 H6A N6 H6B 120.0 C8 N7 C5 103.66(19) C8 N9 C4 106.69(19) C8 N9 H9 126.7 C4 N9 H9 126.7 O11 C10 O10 122.8(2) O11 C10 C11 124.0(2) O10 C10 C11 113.14(19) C10 C11 C12 113.51(18) C10 C11 H11A 108.9 C12 C11 H11A 108.9 C10 C11 H11B 108.9 C12 C11 H11B 108.9 H11A C11 H11B 107.7 C13 C12 C11 111.67(18) C13 C12 H12A 109.3 C11 C12 H12A 109.3 C13 C12 H12B 109.3 C11 C12 H12B 109.3 H12A C12 H12B 107.9 O14 C13 O13 119.8(2) O14 C13 C12 123.2(2) O13 C13 C12 116.99(19) C10 O10 H10 109.5 C13 O13 H13 109.5 loop_ _geom_bond_atom_site_label_1 _geom_bond_atom_site_label_2 _geom_bond_distance C2 N3 1.325(3) C2 N1 1.340(3) C2 H2 0.9500 C4 N3 1.352(3) C4 N9 1.370(3) C4 C5 1.382(3) C5 N7 1.390(3) C5 C6 1.407(3) C6 N6 1.333(3) C6 N1 1.362(3) C8 N7 1.324(3) C8 N9 1.351(3) C8 H8 0.9500 N6 H6A 0.8800 N6 H6B 0.8800 N9 H9 0.8800 C10 O11 1.220(3) C10 O10 1.304(3) C10 C11 1.498(3) C11 C12 1.526(3) C11 H11A 0.9900 C11 H11B 0.9900 C12 C13 1.509(3) C12 H12A 0.9900 C12 H12B 0.9900 C13 O14 1.206(3) C13 O13 1.330(3) O10 H10 0.8400 O13 H13 0.8400 loop_ _geom_hbond_atom_site_label_D _geom_hbond_atom_site_label_H _geom_hbond_atom_site_label_A _geom_hbond_distance_DH _geom_hbond_distance_HA _geom_hbond_distance_DA _geom_hbond_angle_DHA _geom_hbond_site_symmetry_A N9 H9 N3 0.88 1.96 2.825(3) 166.4 3_585 N6 H6A O11 0.88 2.04 2.875(2) 157.3 2 N6 H6B O11 0.88 2.05 2.924(3) 171.7 . O10 H10 N7 0.84 1.80 2.630(3) 167.0 . O13 H13 N1 0.84 1.87 2.686(2) 162.9 2_535 loop_ _geom_torsion_atom_site_label_1 _geom_torsion_atom_site_label_2 _geom_torsion_atom_site_label_3 _geom_torsion_atom_site_label_4 _geom_torsion N3 C4 C5 N7 -179.3(2) N9 C4 C5 N7 0.0(3) N3 C4 C5 C6 -1.1(4) N9 C4 C5 C6 178.2(2) C4 C5 C6 N6 -178.8(2) N7 C5 C6 N6 -1.2(4) C4 C5 C6 N1 0.7(3) N7 C5 C6 N1 178.3(2) N3 C2 N1 C6 -0.9(4) N6 C6 N1 C2 179.7(2) C5 C6 N1 C2 0.2(3) N1 C2 N3 C4 0.5(4) N9 C4 N3 C2 -178.6(2) C5 C4 N3 C2 0.6(3) N9 C8 N7 C5 0.6(3) C4 C5 N7 C8 -0.4(3) C6 C5 N7 C8 -178.1(3) N7 C8 N9 C4 -0.6(3) N3 C4 N9 C8 179.6(2) C5 C4 N9 C8 0.3(3) O11 C10 C11 C12 3.7(3) O10 C10 C11 C12 -176.4(2) C10 C11 C12 C13 177.01(19) C11 C12 C13 O14 12.6(3) C11 C12 C13 O13 -168.0(2)