#------------------------------------------------------------------------------ #$Date: 2016-03-24 14:10:54 +0200 (Thu, 24 Mar 2016) $ #$Revision: 179655 $ #$URL: file:///home/coder/svn-repositories/cod/cif/4/51/08/4510816.cif $ #------------------------------------------------------------------------------ # # This file is available in the Crystallography Open Database (COD), # http://www.crystallography.net/ # # All data on this site have been placed in the public domain by the # contributors. # data_4510816 loop_ _publ_author_name 'Song, Jia-Xi' 'Yan, Yan' 'Yao, Jia' 'Chen, Jia-Mei' 'Lu, Tong-Bu' _publ_section_title ; Improving the Solubility of Lenalidomide via Cocrystals ; _journal_issue 6 _journal_name_full 'Crystal Growth & Design' _journal_page_first 3069 _journal_paper_doi 10.1021/cg500327s _journal_volume 14 _journal_year 2014 _chemical_formula_sum 'C14 H17 N5 O4' _chemical_formula_weight 319.33 _chemical_name_systematic ; ? ; _space_group_IT_number 14 _symmetry_cell_setting monoclinic _symmetry_space_group_name_Hall '-P 2yab' _symmetry_space_group_name_H-M 'P 1 21/a 1' _atom_sites_solution_hydrogens geom _atom_sites_solution_primary direct _atom_sites_solution_secondary difmap _audit_creation_method SHELXL-97 _cell_angle_alpha 90.00 _cell_angle_beta 116.414(6) _cell_angle_gamma 90.00 _cell_formula_units_Z 4 _cell_length_a 13.1592(6) _cell_length_b 9.5499(3) _cell_length_c 13.1773(6) _cell_measurement_reflns_used 4519 _cell_measurement_temperature 285(14) _cell_measurement_theta_max 65.3487 _cell_measurement_theta_min 3.7423 _cell_volume 1483.10(13) _computing_structure_refinement 'SHELXL-97 (Sheldrick, 1997)' _computing_structure_solution 'SHELXS-97 (Sheldrick, 1990)' _diffrn_ambient_temperature 285(14) _diffrn_detector_area_resol_mean 10.5058 _diffrn_measured_fraction_theta_full 0.966 _diffrn_measured_fraction_theta_max 0.966 _diffrn_measurement_device_type 'Xcalibur, Atlas, Gemini ultra' _diffrn_measurement_method '\w scans' _diffrn_radiation_monochromator graphite _diffrn_radiation_source 'fine-focus sealed tube' _diffrn_radiation_type CuK\a _diffrn_radiation_wavelength 1.54184 _diffrn_reflns_av_R_equivalents 0.0458 _diffrn_reflns_av_sigmaI/netI 0.0330 _diffrn_reflns_limit_h_max 14 _diffrn_reflns_limit_h_min -15 _diffrn_reflns_limit_k_max 11 _diffrn_reflns_limit_k_min -8 _diffrn_reflns_limit_l_max 14 _diffrn_reflns_limit_l_min -15 _diffrn_reflns_number 9090 _diffrn_reflns_theta_full 65.45 _diffrn_reflns_theta_max 65.45 _diffrn_reflns_theta_min 3.75 _diffrn_standards_number 9363 _exptl_absorpt_coefficient_mu 0.904 _exptl_absorpt_correction_T_max 0.9734 _exptl_absorpt_correction_T_min 0.9151 _exptl_crystal_colour colourless _exptl_crystal_density_diffrn 1.430 _exptl_crystal_density_method 'not measured' _exptl_crystal_description block _exptl_crystal_F_000 672 _exptl_crystal_size_max 0.10 _exptl_crystal_size_mid 0.08 _exptl_crystal_size_min 0.05 _refine_diff_density_max 0.417 _refine_diff_density_min -0.219 _refine_diff_density_rms 0.042 _refine_ls_extinction_method none _refine_ls_goodness_of_fit_ref 1.047 _refine_ls_hydrogen_treatment mixed _refine_ls_matrix_type full _refine_ls_number_parameters 236 _refine_ls_number_reflns 2464 _refine_ls_number_restraints 0 _refine_ls_restrained_S_all 1.047 _refine_ls_R_factor_all 0.0523 _refine_ls_R_factor_gt 0.0445 _refine_ls_shift/su_max 0.004 _refine_ls_shift/su_mean 0.000 _refine_ls_structure_factor_coef Fsqd _refine_ls_weighting_details 'calc w=1/[\s^2^(Fo^2^)+(0.0503P)^2^+0.5430P] where P=(Fo^2^+2Fc^2^)/3' _refine_ls_weighting_scheme calc _refine_ls_wR_factor_gt 0.1092 _refine_ls_wR_factor_ref 0.1165 _reflns_number_gt 2113 _reflns_number_total 2464 _reflns_threshold_expression >2sigma(I) _cod_data_source_file cg500327s_si_002.cif _cod_data_source_block exp_5470 _cod_depositor_comments 'Adding full bibliography for 4510815--4510817.cif.' _cod_original_cell_volume 1483.09(11) _cod_database_code 4510816 loop_ _symmetry_equiv_pos_as_xyz 'x, y, z' '-x+1/2, y+1/2, -z' '-x, -y, -z' 'x-1/2, -y-1/2, z' loop_ _atom_site_label _atom_site_type_symbol _atom_site_fract_x _atom_site_fract_y _atom_site_fract_z _atom_site_U_iso_or_equiv _atom_site_adp_type _atom_site_occupancy _atom_site_symmetry_multiplicity _atom_site_calc_flag _atom_site_refinement_flags N3 N 0.66456(15) 0.42955(19) 0.56587(13) 0.0401(4) Uani 1 1 d . N4 N 0.6476(2) 0.1557(2) 0.75963(18) 0.0580(6) Uani 1 1 d . O1 O 0.99578(12) 0.64248(17) 0.82585(12) 0.0528(4) Uani 1 1 d . O2 O 0.76088(14) 0.43086(15) 0.75607(12) 0.0534(4) Uani 1 1 d . O3 O 0.55691(17) 0.42289(18) 0.37818(13) 0.0704(6) Uani 1 1 d . N2 N 0.81119(13) 0.71040(17) 0.77015(13) 0.0385(4) Uani 1 1 d . C7 C 0.81965(17) 0.9061(2) 1.01429(16) 0.0373(4) Uani 1 1 d . C8 C 0.83102(16) 0.82532(19) 0.93173(15) 0.0332(4) Uani 1 1 d . N1 N 0.71608(17) 0.9652(2) 0.99555(19) 0.0504(5) Uani 1 1 d . C10 C 0.92187(16) 0.7013(2) 0.84475(16) 0.0378(4) Uani 1 1 d . C11 C 0.93595(16) 0.7756(2) 0.94805(15) 0.0357(4) Uani 1 1 d . C14 C 0.73061(16) 0.4939(2) 0.66743(16) 0.0363(4) Uani 1 1 d . C15 C 0.74295(16) 0.7831(2) 0.81638(16) 0.0377(4) Uani 1 1 d . H11 H 0.6868 0.7212 0.8213 0.045 Uiso 1 1 calc R H12 H 0.7050 0.8642 0.7710 0.045 Uiso 1 1 calc R C16 C 0.61549(18) 0.4921(2) 0.46003(16) 0.0412(5) Uani 1 1 d . C17 C 0.67156(19) 0.7219(2) 0.56643(17) 0.0458(5) Uani 1 1 d . H14 H 0.6955 0.8166 0.5612 0.055 Uiso 1 1 calc R H13 H 0.6063 0.7270 0.5821 0.055 Uiso 1 1 calc R C18 C 0.76658(17) 0.6441(2) 0.66014(16) 0.0388(5) Uani 1 1 d . H17 H 0.8291 0.6386 0.6391 0.047 Uiso 1 1 calc R C20 C 0.64022(19) 0.6449(2) 0.45557(16) 0.0426(5) Uani 1 1 d . H16 H 0.5740 0.6892 0.3966 0.051 Uiso 1 1 calc R H15 H 0.7021 0.6541 0.4350 0.051 Uiso 1 1 calc R C21 C 0.91907(19) 0.9318(2) 1.11278(17) 0.0444(5) Uani 1 1 d . H8 H 0.9152 0.9849 1.1701 0.053 Uiso 1 1 calc R C22 C 1.03424(18) 0.8017(2) 1.04613(17) 0.0465(5) Uani 1 1 d . H10 H 1.1043 0.7675 1.0562 0.056 Uiso 1 1 calc R C23 C 1.02321(19) 0.8808(2) 1.12805(18) 0.0498(6) Uani 1 1 d . H9 H 1.0873 0.9003 1.1952 0.060 Uiso 1 1 calc R H3 H 0.644(2) 0.345(3) 0.569(2) 0.050(7) Uiso 1 1 d . H2 H 0.652(2) 0.917(3) 0.945(2) 0.059(7) Uiso 1 1 d . H1 H 0.713(3) 0.991(3) 1.058(3) 0.075(9) Uiso 1 1 d . O5 O 0.60231(13) 0.14736(15) 0.57377(12) 0.0477(4) Uani 1 1 d . C12 C 0.58809(17) 0.1032(2) 0.65590(17) 0.0384(5) Uani 1 1 d . N5 N 0.51321(16) 0.0021(2) 0.64268(18) 0.0482(5) Uani 1 1 d . H7 H 0.507(2) -0.035(3) 0.703(2) 0.058(7) Uiso 1 1 d . H6 H 0.478(2) -0.041(3) 0.576(3) 0.065(8) Uiso 1 1 d . H4 H 0.690(2) 0.228(3) 0.7668(19) 0.046(6) Uiso 1 1 d . H5 H 0.639(2) 0.122(3) 0.815(3) 0.068(8) Uiso 1 1 d . loop_ _atom_site_aniso_label _atom_site_aniso_U_11 _atom_site_aniso_U_22 _atom_site_aniso_U_33 _atom_site_aniso_U_23 _atom_site_aniso_U_13 _atom_site_aniso_U_12 N3 0.0486(10) 0.0360(9) 0.0291(9) -0.0026(7) 0.0115(8) -0.0062(8) N4 0.0793(15) 0.0507(12) 0.0403(11) -0.0028(9) 0.0232(11) -0.0154(11) O1 0.0423(9) 0.0730(11) 0.0382(8) -0.0085(7) 0.0136(7) 0.0134(7) O2 0.0702(11) 0.0478(9) 0.0301(8) 0.0041(6) 0.0115(7) -0.0035(7) O3 0.0920(14) 0.0622(11) 0.0323(9) -0.0086(7) 0.0054(9) -0.0194(9) N2 0.0351(9) 0.0416(9) 0.0316(9) -0.0075(7) 0.0082(7) 0.0011(7) C7 0.0410(11) 0.0365(10) 0.0365(10) -0.0015(8) 0.0192(9) -0.0046(8) C8 0.0347(10) 0.0325(9) 0.0298(10) -0.0006(7) 0.0121(8) -0.0033(7) N1 0.0450(11) 0.0583(12) 0.0499(12) -0.0137(9) 0.0229(10) -0.0018(9) C10 0.0349(10) 0.0421(11) 0.0320(10) -0.0004(8) 0.0109(8) 0.0015(8) C11 0.0360(10) 0.0387(10) 0.0299(10) -0.0015(8) 0.0123(8) -0.0014(8) C14 0.0361(10) 0.0401(10) 0.0277(10) -0.0005(8) 0.0096(8) 0.0035(8) C15 0.0322(10) 0.0380(10) 0.0362(10) -0.0031(8) 0.0093(8) 0.0001(8) C16 0.0423(11) 0.0483(12) 0.0276(10) -0.0041(9) 0.0106(9) -0.0029(9) C17 0.0491(12) 0.0414(11) 0.0385(11) 0.0016(9) 0.0120(10) 0.0014(9) C18 0.0389(11) 0.0401(11) 0.0308(10) -0.0028(8) 0.0097(9) 0.0006(8) C20 0.0464(12) 0.0452(11) 0.0308(10) 0.0054(8) 0.0122(9) 0.0024(9) C21 0.0528(13) 0.0478(12) 0.0321(11) -0.0091(9) 0.0184(10) -0.0073(10) C22 0.0345(11) 0.0632(13) 0.0343(11) -0.0053(9) 0.0085(9) 0.0012(10) C23 0.0448(13) 0.0647(14) 0.0301(11) -0.0079(10) 0.0078(9) -0.0084(10) O5 0.0570(9) 0.0456(8) 0.0403(8) -0.0002(6) 0.0214(7) -0.0133(7) C12 0.0395(11) 0.0353(10) 0.0375(11) 0.0044(8) 0.0145(9) 0.0042(8) N5 0.0501(11) 0.0540(11) 0.0390(11) 0.0054(9) 0.0185(9) -0.0120(9) loop_ _atom_type_symbol _atom_type_description _atom_type_scat_dispersion_real _atom_type_scat_dispersion_imag _atom_type_scat_source C C 0.0181 0.0091 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' H H 0.0000 0.0000 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' N N 0.0311 0.0180 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' O O 0.0492 0.0322 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' loop_ _geom_angle_atom_site_label_1 _geom_angle_atom_site_label_2 _geom_angle_atom_site_label_3 _geom_angle C14 N3 C16 126.66(18) C14 N3 H3 116.5(16) C16 N3 H3 116.3(16) C12 N4 H4 117.9(15) C12 N4 H5 120(2) H4 N4 H5 122(3) C10 N2 C18 121.83(16) C10 N2 C15 112.97(15) C18 N2 C15 125.03(16) N1 C7 C8 121.48(19) N1 C7 C21 122.19(19) C8 C7 C21 116.19(18) C11 C8 C7 120.96(17) C11 C8 C15 109.46(16) C7 C8 C15 129.54(17) C7 N1 H2 115.3(16) C7 N1 H1 114(2) H2 N1 H1 114(3) O1 C10 N2 124.86(18) O1 C10 C11 128.07(18) N2 C10 C11 107.06(16) C8 C11 C22 122.44(18) C8 C11 C10 108.39(16) C22 C11 C10 129.11(18) O2 C14 N3 120.67(18) O2 C14 C18 123.28(17) N3 C14 C18 115.99(16) N2 C15 C8 102.04(15) N2 C15 H11 111.4 C8 C15 H11 111.4 N2 C15 H12 111.4 C8 C15 H12 111.4 H11 C15 H12 109.2 O3 C16 N3 119.34(19) O3 C16 C20 124.13(19) N3 C16 C20 116.53(17) C18 C17 C20 108.71(17) C18 C17 H14 109.9 C20 C17 H14 109.9 C18 C17 H13 109.9 C20 C17 H13 109.9 H14 C17 H13 108.3 N2 C18 C17 115.16(16) N2 C18 C14 110.31(16) C17 C18 C14 110.34(16) N2 C18 H17 106.9 C17 C18 H17 106.9 C14 C18 H17 106.9 C16 C20 C17 113.80(17) C16 C20 H16 108.8 C17 C20 H16 108.8 C16 C20 H15 108.8 C17 C20 H15 108.8 H16 C20 H15 107.7 C23 C21 C7 122.16(19) C23 C21 H8 118.9 C7 C21 H8 118.9 C23 C22 C11 116.74(19) C23 C22 H10 121.6 C11 C22 H10 121.6 C22 C23 C21 121.50(19) C22 C23 H9 119.2 C21 C23 H9 119.2 O5 C12 N5 121.14(19) O5 C12 N4 120.9(2) N5 C12 N4 117.9(2) C12 N5 H7 121.5(16) C12 N5 H6 119.5(18) H7 N5 H6 118(2) loop_ _geom_bond_atom_site_label_1 _geom_bond_atom_site_label_2 _geom_bond_distance N3 C14 1.375(2) N3 C16 1.385(3) N3 H3 0.86(3) N4 C12 1.334(3) N4 H4 0.86(3) N4 H5 0.86(3) O1 C10 1.240(2) O2 C14 1.213(2) O3 C16 1.206(2) N2 C10 1.350(3) N2 C18 1.445(2) N2 C15 1.465(3) C7 N1 1.392(3) C7 C8 1.395(3) C7 C21 1.395(3) C8 C11 1.384(3) C8 C15 1.500(3) N1 H2 0.93(3) N1 H1 0.88(3) C10 C11 1.472(3) C11 C22 1.385(3) C14 C18 1.527(3) C15 H11 0.9700 C15 H12 0.9700 C16 C20 1.501(3) C17 C18 1.505(3) C17 C20 1.520(3) C17 H14 0.9700 C17 H13 0.9700 C18 H17 0.9800 C20 H16 0.9700 C20 H15 0.9700 C21 C23 1.382(3) C21 H8 0.9300 C22 C23 1.377(3) C22 H10 0.9300 C23 H9 0.9300 O5 C12 1.251(2) C12 N5 1.334(3) N5 H7 0.91(3) N5 H6 0.89(3) loop_ _geom_hbond_atom_site_label_D _geom_hbond_atom_site_label_H _geom_hbond_atom_site_label_A _geom_hbond_distance_DH _geom_hbond_distance_HA _geom_hbond_distance_DA _geom_hbond_angle_DHA _geom_hbond_site_symmetry_A N3 H3 O5 0.86(3) 1.98(3) 2.832(2) 177(2) . N1 H2 O1 0.93(3) 2.04(3) 2.949(3) 167(2) 4_575 N1 H1 O2 0.88(3) 2.39(3) 3.167(3) 148(3) 2_657 N5 H7 O1 0.91(3) 1.97(3) 2.877(2) 172(2) 4_565 N5 H6 O5 0.89(3) 2.05(3) 2.937(3) 178(3) 3_656 N4 H4 O2 0.86(3) 2.18(3) 3.032(3) 167(2) . N4 H5 N1 0.86(3) 2.60(3) 3.361(3) 148(3) 1_545 loop_ _geom_torsion_atom_site_label_1 _geom_torsion_atom_site_label_2 _geom_torsion_atom_site_label_3 _geom_torsion_atom_site_label_4 _geom_torsion N1 C7 C8 C11 175.24(18) C21 C7 C8 C11 -0.5(3) N1 C7 C8 C15 -2.1(3) C21 C7 C8 C15 -177.79(18) C18 N2 C10 O1 3.3(3) C15 N2 C10 O1 178.73(19) C18 N2 C10 C11 -177.88(16) C15 N2 C10 C11 -2.5(2) C7 C8 C11 C22 0.5(3) C15 C8 C11 C22 178.29(19) C7 C8 C11 C10 -176.96(17) C15 C8 C11 C10 0.8(2) O1 C10 C11 C8 179.7(2) N2 C10 C11 C8 1.0(2) O1 C10 C11 C22 2.5(4) N2 C10 C11 C22 -176.3(2) C16 N3 C14 O2 173.5(2) C16 N3 C14 C18 -9.2(3) C10 N2 C15 C8 2.8(2) C18 N2 C15 C8 178.09(17) C11 C8 C15 N2 -2.1(2) C7 C8 C15 N2 175.42(19) C14 N3 C16 O3 -178.1(2) C14 N3 C16 C20 2.1(3) C10 N2 C18 C17 -146.14(19) C15 N2 C18 C17 39.0(3) C10 N2 C18 C14 88.2(2) C15 N2 C18 C14 -86.7(2) C20 C17 C18 N2 175.91(17) C20 C17 C18 C14 -58.4(2) O2 C14 C18 N2 -16.5(3) N3 C14 C18 N2 166.27(17) O2 C14 C18 C17 -144.9(2) N3 C14 C18 C17 37.9(2) O3 C16 C20 C17 155.8(2) N3 C16 C20 C17 -24.5(3) C18 C17 C20 C16 52.7(2) N1 C7 C21 C23 -175.5(2) C8 C7 C21 C23 0.2(3) C8 C11 C22 C23 -0.2(3) C10 C11 C22 C23 176.7(2) C11 C22 C23 C21 -0.2(3) C7 C21 C23 C22 0.1(3)