#------------------------------------------------------------------------------ #$Date: 2014-07-05 12:07:13 +0300 (Sat, 05 Jul 2014) $ #$Revision: 119061 $ #$URL: file:///home/coder/svn-repositories/cod/cif/4/51/08/4510817.cif $ #------------------------------------------------------------------------------ # # This file is available in the Crystallography Open Database (COD), # http://www.crystallography.net/ # # All data on this site have been placed in the public domain by the # contributors. # data_4510817 loop_ _publ_author_name 'Song, Jia-Xi' 'Yan, Yan' 'Yao, Jia' 'Chen, Jia-Mei' 'Lu, Tong-Bu' _publ_section_title ; Improving the Solubility of Lenalidomide via Cocrystals ; _journal_issue 6 _journal_name_full 'Crystal Growth & Design' _journal_page_first 3069 _journal_paper_doi 10.1021/cg500327s _journal_volume 14 _journal_year 2014 _chemical_formula_sum 'C20 H19 N3 O7' _chemical_formula_weight 413.38 _chemical_name_systematic ; ? ; _space_group_IT_number 2 _symmetry_cell_setting triclinic _symmetry_space_group_name_Hall '-P 1' _symmetry_space_group_name_H-M 'P -1' _atom_sites_solution_hydrogens geom _atom_sites_solution_primary direct _atom_sites_solution_secondary difmap _audit_creation_method SHELXL-97 _cell_angle_alpha 86.348(6) _cell_angle_beta 79.738(7) _cell_angle_gamma 65.391(8) _cell_formula_units_Z 2 _cell_length_a 8.6430(7) _cell_length_b 8.9364(7) _cell_length_c 13.4003(10) _cell_measurement_reflns_used 2184 _cell_measurement_temperature 150.00(10) _cell_measurement_theta_max 65.3381 _cell_measurement_theta_min 3.3492 _cell_volume 925.88(14) _computing_structure_refinement 'SHELXL-97 (Sheldrick, 1997)' _computing_structure_solution 'SHELXS-97 (Sheldrick, 1990)' _diffrn_ambient_temperature 150.00(10) _diffrn_detector_area_resol_mean 10.5058 _diffrn_measured_fraction_theta_full 0.992 _diffrn_measured_fraction_theta_max 0.992 _diffrn_measurement_device_type 'Xcalibur, Atlas, Gemini ultra' _diffrn_measurement_method '\w scans' _diffrn_radiation_monochromator graphite _diffrn_radiation_source 'fine-focus sealed tube' _diffrn_radiation_type CuK\a _diffrn_radiation_wavelength 1.54178 _diffrn_reflns_av_R_equivalents 0.0314 _diffrn_reflns_av_sigmaI/netI 0.0383 _diffrn_reflns_limit_h_max 9 _diffrn_reflns_limit_h_min -8 _diffrn_reflns_limit_k_max 10 _diffrn_reflns_limit_k_min -8 _diffrn_reflns_limit_l_max 15 _diffrn_reflns_limit_l_min -11 _diffrn_reflns_number 5686 _diffrn_reflns_theta_full 62.60 _diffrn_reflns_theta_max 62.60 _diffrn_reflns_theta_min 3.35 _diffrn_standards_number 5801 _exptl_absorpt_coefficient_mu 0.963 _exptl_absorpt_correction_T_max 0.9717 _exptl_absorpt_correction_T_min 0.9099 _exptl_absorpt_correction_type multi-scan _exptl_crystal_colour colourless _exptl_crystal_density_diffrn 1.483 _exptl_crystal_density_method 'not measured' _exptl_crystal_description noodle _exptl_crystal_F_000 432 _exptl_crystal_size_max 0.10 _exptl_crystal_size_mid 0.05 _exptl_crystal_size_min 0.03 _refine_diff_density_max 0.799 _refine_diff_density_min -0.362 _refine_diff_density_rms 0.056 _refine_ls_extinction_method none _refine_ls_goodness_of_fit_ref 1.040 _refine_ls_hydrogen_treatment mixed _refine_ls_matrix_type full _refine_ls_number_parameters 286 _refine_ls_number_reflns 2918 _refine_ls_number_restraints 0 _refine_ls_restrained_S_all 1.040 _refine_ls_R_factor_all 0.0639 _refine_ls_R_factor_gt 0.0498 _refine_ls_shift/su_max 0.000 _refine_ls_shift/su_mean 0.000 _refine_ls_structure_factor_coef Fsqd _refine_ls_weighting_details 'calc w=1/[\s^2^(Fo^2^)+(0.0653P)^2^+0.6634P] where P=(Fo^2^+2Fc^2^)/3' _refine_ls_weighting_scheme calc _refine_ls_wR_factor_gt 0.1245 _refine_ls_wR_factor_ref 0.1361 _reflns_number_gt 2348 _reflns_number_total 2918 _reflns_threshold_expression >2sigma(I) _[local]_cod_data_source_file cg500327s_si_003.cif _[local]_cod_data_source_block exp_5277 _cod_depositor_comments 'Adding full bibliography for 4510815--4510817.cif.' _cod_original_cell_volume 925.88(13) _cod_database_code 4510817 loop_ _symmetry_equiv_pos_as_xyz 'x, y, z' '-x, -y, -z' loop_ _atom_site_label _atom_site_type_symbol _atom_site_fract_x _atom_site_fract_y _atom_site_fract_z _atom_site_U_iso_or_equiv _atom_site_adp_type _atom_site_occupancy _atom_site_symmetry_multiplicity _atom_site_calc_flag _atom_site_refinement_flags O2 O 0.7222(2) 0.5203(2) 0.80512(14) 0.0326(5) Uani 1 1 d . N3 N 0.5998(3) 0.6375(3) 0.66859(17) 0.0288(5) Uani 1 1 d . O3 O 0.4821(3) 0.7452(3) 0.53006(15) 0.0460(6) Uani 1 1 d . N1 N 1.0202(3) 0.7489(3) 1.05745(19) 0.0291(5) Uani 1 1 d . C15 C 0.8809(3) 0.7062(3) 1.09331(18) 0.0232(5) Uani 1 1 d . N2 N 0.5657(3) 0.8010(3) 0.91994(16) 0.0312(5) Uani 1 1 d . O1 O 0.3581(3) 0.7222(3) 1.00950(17) 0.0466(6) Uani 1 1 d . C18 C 0.6084(3) 0.7021(3) 1.07790(19) 0.0246(6) Uani 1 1 d . C20 C 0.7501(3) 0.7346(3) 1.03704(18) 0.0221(5) Uani 1 1 d . C21 C 0.8620(3) 0.6421(3) 1.19019(19) 0.0278(6) Uani 1 1 d . H21 H 0.9479 0.6198 1.2292 0.033 Uiso 1 1 calc R C22 C 0.6239(3) 0.6414(3) 0.76745(19) 0.0269(6) Uani 1 1 d . C23 C 0.4996(4) 0.9460(3) 0.7581(2) 0.0391(7) Uani 1 1 d . H23A H 0.6138 0.9448 0.7388 0.047 Uiso 1 1 calc R H23B H 0.4251 1.0479 0.7947 0.047 Uiso 1 1 calc R C24 C 0.4283(4) 0.9365(3) 0.6628(2) 0.0313(6) Uani 1 1 d . H24A H 0.3042 0.9730 0.6806 0.038 Uiso 1 1 calc R H24B H 0.4499 1.0125 0.6132 0.038 Uiso 1 1 calc R C25 C 0.5029(4) 0.7687(3) 0.6142(2) 0.0306(6) Uani 1 1 d . C26 C 0.5887(4) 0.6407(3) 1.1747(2) 0.0293(6) Uani 1 1 d . H26 H 0.4921 0.6205 1.2010 0.035 Uiso 1 1 calc R C27 C 0.7185(4) 0.6106(3) 1.2303(2) 0.0296(6) Uani 1 1 d . H27 H 0.7100 0.5688 1.2954 0.036 Uiso 1 1 calc R C28 C 0.4928(4) 0.7390(3) 1.0031(2) 0.0306(6) Uani 1 1 d . C29 C 0.5090(4) 0.8028(3) 0.8245(2) 0.0351(7) Uani 1 1 d . H29 H 0.3923 0.8066 0.8404 0.042 Uiso 1 1 calc R C30 C 0.7333(4) 0.7973(3) 0.93086(19) 0.0282(6) Uani 1 1 d . H30A H 0.7327 0.9062 0.9239 0.034 Uiso 1 1 calc R H30B H 0.8258 0.7233 0.8815 0.034 Uiso 1 1 calc R H3 H 0.647(4) 0.536(4) 0.641(2) 0.041(9) Uiso 1 1 d . H1A H 1.031(4) 0.769(4) 0.988(3) 0.043(9) Uiso 1 1 d . H1B H 1.113(4) 0.680(4) 1.074(2) 0.040(9) Uiso 1 1 d . O6 O 0.1110(3) 1.2795(2) 0.51398(13) 0.0309(5) Uani 1 1 d . H6 H 0.0901 1.3685 0.5392 0.046 Uiso 1 1 calc R O7 O -0.0578(3) 1.4412(2) 0.40721(14) 0.0353(5) Uani 1 1 d . O4 O 0.2910(3) 0.7043(2) 0.39916(14) 0.0312(5) Uani 1 1 d . H4 H 0.3443 0.7124 0.4419 0.047 Uiso 1 1 calc R O5 O -0.0400(3) 1.0418(2) 0.15501(13) 0.0333(5) Uani 1 1 d . H5 H -0.0057 0.9518 0.1273 0.050 Uiso 1 1 calc R C5 C 0.0269(3) 1.0230(3) 0.24191(18) 0.0243(6) Uani 1 1 d . C8 C 0.0617(3) 1.1514(3) 0.38280(18) 0.0227(5) Uani 1 1 d . C10 C 0.1277(3) 0.8691(3) 0.27742(19) 0.0250(6) Uani 1 1 d . H10 H 0.1504 0.7741 0.2420 0.030 Uiso 1 1 calc R C11 C 0.1631(3) 0.9989(3) 0.41900(18) 0.0230(5) Uani 1 1 d . H11 H 0.2094 0.9914 0.4777 0.028 Uiso 1 1 calc R C12A C -0.0078(3) 1.1646(3) 0.29512(18) 0.0240(6) Uani 1 1 d . H12 H -0.0770 1.2673 0.2724 0.029 Uiso 1 1 calc R C14 C 0.1940(3) 0.8586(3) 0.36606(18) 0.0242(6) Uani 1 1 d . C19 C 0.0318(3) 1.3035(3) 0.43593(18) 0.0245(6) Uani 1 1 d . loop_ _atom_site_aniso_label _atom_site_aniso_U_11 _atom_site_aniso_U_22 _atom_site_aniso_U_33 _atom_site_aniso_U_23 _atom_site_aniso_U_13 _atom_site_aniso_U_12 O2 0.0411(11) 0.0234(9) 0.0364(11) 0.0043(8) -0.0215(9) -0.0110(9) N3 0.0364(13) 0.0233(12) 0.0280(12) -0.0014(9) -0.0155(10) -0.0094(10) O3 0.0529(14) 0.0500(13) 0.0316(11) -0.0050(9) -0.0252(10) -0.0101(11) N1 0.0263(13) 0.0350(13) 0.0296(14) -0.0013(10) -0.0073(10) -0.0151(11) C15 0.0255(13) 0.0193(12) 0.0255(13) -0.0028(10) -0.0068(10) -0.0084(11) N2 0.0368(13) 0.0309(12) 0.0260(12) -0.0028(9) -0.0174(10) -0.0087(11) O1 0.0339(12) 0.0604(14) 0.0574(14) 0.0103(11) -0.0252(10) -0.0256(11) C18 0.0245(14) 0.0218(12) 0.0287(14) -0.0011(10) -0.0090(11) -0.0086(11) C20 0.0282(14) 0.0177(12) 0.0214(12) -0.0008(10) -0.0095(10) -0.0082(11) C21 0.0300(15) 0.0257(13) 0.0267(14) 0.0009(11) -0.0134(11) -0.0069(12) C22 0.0321(15) 0.0255(13) 0.0287(14) 0.0018(11) -0.0146(12) -0.0137(12) C23 0.0482(18) 0.0308(15) 0.0318(15) 0.0009(12) -0.0135(13) -0.0074(14) C24 0.0327(15) 0.0282(14) 0.0280(14) 0.0052(11) -0.0115(12) -0.0058(12) C25 0.0304(15) 0.0353(15) 0.0269(14) 0.0003(12) -0.0122(11) -0.0114(12) C26 0.0288(14) 0.0277(14) 0.0330(15) 0.0040(11) -0.0060(11) -0.0135(12) C27 0.0355(16) 0.0265(14) 0.0256(14) 0.0059(11) -0.0093(12) -0.0106(12) C28 0.0314(16) 0.0285(14) 0.0335(15) -0.0002(11) -0.0133(12) -0.0107(12) C29 0.0431(17) 0.0315(15) 0.0303(15) 0.0008(12) -0.0177(13) -0.0104(13) C30 0.0351(15) 0.0277(14) 0.0213(13) -0.0004(11) -0.0077(11) -0.0111(12) O6 0.0452(12) 0.0215(9) 0.0282(10) -0.0009(8) -0.0203(9) -0.0102(9) O7 0.0529(13) 0.0218(10) 0.0311(10) -0.0001(8) -0.0222(9) -0.0094(9) O4 0.0446(12) 0.0207(9) 0.0300(10) 0.0013(7) -0.0213(9) -0.0092(8) O5 0.0508(13) 0.0261(10) 0.0291(10) 0.0018(8) -0.0240(9) -0.0150(9) C5 0.0283(14) 0.0276(13) 0.0226(13) 0.0028(10) -0.0109(11) -0.0147(11) C8 0.0267(13) 0.0217(12) 0.0199(12) 0.0013(10) -0.0044(10) -0.0102(11) C10 0.0302(14) 0.0234(13) 0.0257(13) -0.0025(10) -0.0089(11) -0.0133(11) C11 0.0261(13) 0.0264(13) 0.0187(12) -0.0007(10) -0.0075(10) -0.0113(11) C12A 0.0278(14) 0.0216(13) 0.0238(13) 0.0056(10) -0.0104(11) -0.0099(11) C14 0.0270(14) 0.0224(13) 0.0235(13) 0.0024(10) -0.0087(10) -0.0090(11) C19 0.0306(14) 0.0245(13) 0.0190(12) 0.0013(10) -0.0075(11) -0.0108(12) loop_ _atom_type_symbol _atom_type_description _atom_type_scat_dispersion_real _atom_type_scat_dispersion_imag _atom_type_scat_source C C 0.0181 0.0091 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' H H 0.0000 0.0000 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' N N 0.0311 0.0180 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' O O 0.0492 0.0322 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' loop_ _geom_angle_atom_site_label_1 _geom_angle_atom_site_label_2 _geom_angle_atom_site_label_3 _geom_angle C25 N3 C22 126.7(2) C25 N3 H3 119(2) C22 N3 H3 114(2) C15 N1 H1A 113(2) C15 N1 H1B 112(2) H1A N1 H1B 112(3) C21 C15 C20 116.8(2) C21 C15 N1 120.9(2) C20 C15 N1 122.1(2) C28 N2 C29 117.6(2) C28 N2 C30 113.0(2) C29 N2 C30 125.1(2) C20 C18 C26 122.7(2) C20 C18 C28 109.6(2) C26 C18 C28 127.7(2) C18 C20 C15 120.5(2) C18 C20 C30 109.3(2) C15 C20 C30 130.2(2) C27 C21 C15 122.0(2) C27 C21 H21 119.0 C15 C21 H21 119.0 O2 C22 N3 120.8(2) O2 C22 C29 124.3(2) N3 C22 C29 114.8(2) C29 C23 C24 109.6(2) C29 C23 H23A 109.8 C24 C23 H23A 109.8 C29 C23 H23B 109.8 C24 C23 H23B 109.8 H23A C23 H23B 108.2 C25 C24 C23 115.0(2) C25 C24 H24A 108.5 C23 C24 H24A 108.5 C25 C24 H24B 108.5 C23 C24 H24B 108.5 H24A C24 H24B 107.5 O3 C25 N3 119.6(2) O3 C25 C24 123.0(2) N3 C25 C24 117.4(2) C27 C26 C18 117.1(3) C27 C26 H26 121.4 C18 C26 H26 121.4 C26 C27 C21 120.9(2) C26 C27 H27 119.6 C21 C27 H27 119.6 O1 C28 N2 124.9(2) O1 C28 C18 129.3(3) N2 C28 C18 105.8(2) N2 C29 C23 115.4(2) N2 C29 C22 109.2(2) C23 C29 C22 110.4(2) N2 C29 H29 107.1 C23 C29 H29 107.1 C22 C29 H29 107.1 N2 C30 C20 102.0(2) N2 C30 H30A 111.4 C20 C30 H30A 111.4 N2 C30 H30B 111.4 C20 C30 H30B 111.4 H30A C30 H30B 109.2 C19 O6 H6 109.5 C14 O4 H4 109.5 C5 O5 H5 109.5 O5 C5 C12A 117.4(2) O5 C5 C10 122.5(2) C12A C5 C10 120.2(2) C12A C8 C11 121.3(2) C12A C8 C19 118.9(2) C11 C8 C19 119.8(2) C14 C10 C5 119.6(2) C14 C10 H10 120.2 C5 C10 H10 120.2 C14 C11 C8 118.7(2) C14 C11 H11 120.7 C8 C11 H11 120.7 C5 C12A C8 119.3(2) C5 C12A H12 120.4 C8 C12A H12 120.4 O4 C14 C11 121.3(2) O4 C14 C10 117.8(2) C11 C14 C10 120.9(2) O7 C19 O6 123.2(2) O7 C19 C8 122.2(2) O6 C19 C8 114.6(2) loop_ _geom_bond_atom_site_label_1 _geom_bond_atom_site_label_2 _geom_bond_distance O2 C22 1.210(3) N3 C25 1.377(3) N3 C22 1.382(3) N3 H3 0.90(3) O3 C25 1.218(3) N1 C15 1.407(4) N1 H1A 0.93(3) N1 H1B 0.84(3) C15 C21 1.395(4) C15 C20 1.397(3) N2 C28 1.381(4) N2 C29 1.446(3) N2 C30 1.468(4) O1 C28 1.222(3) C18 C20 1.386(4) C18 C26 1.386(4) C18 C28 1.467(4) C20 C30 1.504(3) C21 C27 1.393(4) C21 H21 0.9300 C22 C29 1.526(4) C23 C29 1.494(4) C23 C24 1.535(4) C23 H23A 0.9700 C23 H23B 0.9700 C24 C25 1.502(4) C24 H24A 0.9700 C24 H24B 0.9700 C26 C27 1.381(4) C26 H26 0.9300 C27 H27 0.9300 C29 H29 0.9800 C30 H30A 0.9700 C30 H30B 0.9700 O6 C19 1.309(3) O6 H6 0.8200 O7 C19 1.230(3) O4 C14 1.376(3) O4 H4 0.8200 O5 C5 1.362(3) O5 H5 0.8200 C5 C12A 1.386(4) C5 C10 1.394(3) C8 C12A 1.389(3) C8 C11 1.390(3) C8 C19 1.479(3) C10 C14 1.390(3) C10 H10 0.9300 C11 C14 1.383(3) C11 H11 0.9300 C12A H12 0.9300 loop_ _geom_hbond_atom_site_label_D _geom_hbond_atom_site_label_H _geom_hbond_atom_site_label_A _geom_hbond_distance_DH _geom_hbond_distance_HA _geom_hbond_distance_DA _geom_hbond_angle_DHA _geom_hbond_site_symmetry_A N3 H3 O4 0.90(3) 2.07(3) 2.949(3) 166(3) 2_666 N1 H1A O5 0.93(3) 2.49(4) 3.324(3) 150(3) 2_676 N1 H1B O1 0.84(3) 2.31(3) 2.788(3) 116(3) 1_655 N1 H1B O2 0.84(3) 2.49(3) 3.251(3) 152(3) 2_767 O6 H6 O7 0.82 1.78 2.601(2) 176.7 2_586 O4 H4 O3 0.82 1.93 2.749(3) 172.9 . O5 H5 N1 0.82 2.00 2.809(3) 166.7 1_454 loop_ _geom_torsion_atom_site_label_1 _geom_torsion_atom_site_label_2 _geom_torsion_atom_site_label_3 _geom_torsion_atom_site_label_4 _geom_torsion C26 C18 C20 C15 -0.1(4) C28 C18 C20 C15 -178.8(2) C26 C18 C20 C30 179.2(2) C28 C18 C20 C30 0.4(3) C21 C15 C20 C18 1.0(3) N1 C15 C20 C18 -175.2(2) C21 C15 C20 C30 -178.1(2) N1 C15 C20 C30 5.7(4) C20 C15 C21 C27 -1.2(4) N1 C15 C21 C27 175.0(2) C25 N3 C22 O2 -174.6(3) C25 N3 C22 C29 9.6(4) C29 C23 C24 C25 -44.1(4) C22 N3 C25 O3 -174.4(3) C22 N3 C25 C24 6.1(4) C23 C24 C25 O3 -167.6(3) C23 C24 C25 N3 11.9(4) C20 C18 C26 C27 -0.6(4) C28 C18 C26 C27 177.9(2) C18 C26 C27 C21 0.3(4) C15 C21 C27 C26 0.6(4) C29 N2 C28 O1 -18.4(4) C30 N2 C28 O1 -176.3(3) C29 N2 C28 C18 162.2(2) C30 N2 C28 C18 4.2(3) C20 C18 C28 O1 177.8(3) C26 C18 C28 O1 -0.9(5) C20 C18 C28 N2 -2.8(3) C26 C18 C28 N2 178.5(2) C28 N2 C29 C23 144.9(3) C30 N2 C29 C23 -60.1(4) C28 N2 C29 C22 -90.0(3) C30 N2 C29 C22 65.0(3) C24 C23 C29 N2 -176.9(2) C24 C23 C29 C22 58.7(3) O2 C22 C29 N2 13.7(4) N3 C22 C29 N2 -170.7(2) O2 C22 C29 C23 141.7(3) N3 C22 C29 C23 -42.7(3) C28 N2 C30 C20 -3.9(3) C29 N2 C30 C20 -159.9(2) C18 C20 C30 N2 2.0(3) C15 C20 C30 N2 -178.9(2) O5 C5 C10 C14 179.2(2) C12A C5 C10 C14 -0.5(4) C12A C8 C11 C14 -0.2(4) C19 C8 C11 C14 -177.8(2) O5 C5 C12A C8 -178.3(2) C10 C5 C12A C8 1.3(4) C11 C8 C12A C5 -1.0(4) C19 C8 C12A C5 176.6(2) C8 C11 C14 O4 -178.9(2) C8 C11 C14 C10 1.1(4) C5 C10 C14 O4 179.2(2) C5 C10 C14 C11 -0.8(4) C12A C8 C19 O7 2.8(4) C11 C8 C19 O7 -179.5(2) C12A C8 C19 O6 -175.9(2) C11 C8 C19 O6 1.8(4)