Crystallography Open Database

Information card for entry 7105263

Preview

Coordinates	7105263.cif
Original paper (by DOI)	HTML

Structure parameters

Common name	Chloro-(2-(pyridin-2-ylmethylamino)ethane-1,1- diyldiphosphonic acid) -platinum(ii)deuterium oxide solvate
Chemical name	Chloro-(2-(pyridin-2-ylmethylamino)ethane-1,1-diyldiphosphonic acid) -platinum(ii)deuterium oxide solvate
Formula	C8 H9 Cl D6 N2 O7 P2 Pt
Calculated formula	C8 H9 Cl D6 N2 O7 P2 Pt
SMILES	c1cccc2C[N]3(CC(P(=O)(O[Pt]3(Cl)[n]12)O[2H])P(=O)(O[2H])O[2H])[2H].O([2H])[2H]
Title of publication	Platinum(ii) compounds bearing bone-targeting group: synthesis, crystal structure and antitumor activity
Authors of publication	Xue, Zuqin; Lin, Miaoxin; Zhu, Jianhui; Zhang, Junfeng; Li, Yizhi; Guo, Zijian
Journal of publication	Chemical Communications
Year of publication	2010
Journal volume	46
Journal issue	8
Pages of publication	1212
a	11.2339 ± 0.001 Å
b	16.9052 ± 0.0015 Å
c	7.7957 ± 0.0007 Å
α	90°
β	94.529 ± 0.001°
γ	90°
Cell volume	1475.9 ± 0.2 Å³
Cell temperature	291 ± 2 K
Ambient diffraction temperature	291 ± 2 K
Number of distinct elements	8
Space group number	14
Hermann-Mauguin space group symbol	P 1 21/c 1
Hall space group symbol	-P 2ybc
Residual factor for all reflections	0.0509
Residual factor for significantly intense reflections	0.0374
Weighted residual factors for significantly intense reflections	0.0712
Weighted residual factors for all reflections included in the refinement	0.0732
Goodness-of-fit parameter for all reflections included in the refinement	1.038
Diffraction radiation wavelength	0.71073 Å
Diffraction radiation type	MoKα
Has coordinates	Yes
Has disorder	No
Has F_obs	No

Version history

Revision	Date	Message	Files
180156 (current)	2016-03-26	cif/7/10/ (antanas@kurmis) Replacing _[local]_cod_* tags with their equivalents from the COD CIF dictionary in multiple entries in subrange 7/10/52.	7105263.cif
106525	2014-03-15	cif/ (saulius@koala.ibt.lt) Adding DOIs to those Chem. Comm. structure descriptions that did not have it before and that could be matched unambiguously. Unambiguously means: a) journal name is "like 'Chem%Com%'" in SQl parlour b) first author's last name is the same in COD and in PubMed b) publication year and first page are the same in COD and in PubMed database. The commands to change these files where: awk '{print $1, $2}' outputs/join-dois.tab \ \| xargs -i sh -c ' CODID=$(echo {} \| awk "{print \$1}"); DOI=$(echo {} \| awk "{print \$2}"); CODFILE=$(echo $CODID \| codid2file); if ! grep -q _journal_paper_doi $CODFILE; then ( set -x; echo _journal_paper_doi $DOI >> $CODFILE ); else echo $CODID already has DOI; fi' Some files that did not had new-line at the end had to be fixed afterwards (in the ~/struct/cod/cif/7 directory, a COD working copy): svn st \ \| awk '{print $2}' \ \| xargs cifparse -q 2> /dev/null \ \| awk -F"'" '{print $2}' \ \| xargs perl -i -pe 's/_journal_paper_doi/\n_journal_paper_doi/' The working copy containing 'outputs/join-dois.tab' was: Path: /home/saulius/struct/xyz-extraction/dois/chem-comm-refetched-from-pubmed URL: svn+ssh://pitonas.ibt.lt/home/xray/svn-repositories/xyz-extraction/dois/chem-comm-refetched-from-pubmed Repository Root: svn+ssh://pitonas.ibt.lt/home/xray/svn-repositories/xyz-extraction Repository UUID: 9acf3947-1f02-0410-ae2a-984b57ad209b Revision: 2871 Node Kind: directory Schedule: normal Last Changed Author: saulius Last Changed Rev: 2871 Last Changed Date: 2014-03-15 11:18:46 +0200 (Sat, 15 Mar 2014) Three conflicts in files 10/81/7108128.cif, 10/81/7108130.cif and 10/99/7109903.cif were resolved manually.	7105263.cif
35909	2012-02-26	cif/7/: reorganising range 7 into a prefix-directory tree.	7105263.cif
5312	2011-01-03	cif/ Adding files, updated with the 'cif_fix_enum' program and the cif_core.dic dictionary. The enumerator values were fixed, mostly incorrect case, but also some values that had extra underscores, dashes or spaces. Unfortunately, 22 had non-ASCII characters with the 8-th bit set, and these got incorrectly interpreted as latin1 characters and converted to their UTF8 equivalents by Perl. To fix the structures, however, they need to be redeposited from the original files with the new CIFParser/cif_filter version.	7105263.cif
1006	2010-02-21	cif/7/ Adding data extracted in Chem-Comm-2010_6-8/ processing directory.	7105263.cif