Crystallography Open Database

Information card for entry 7106742

Preview

Coordinates	7106742.cif
Original paper (by DOI)	HTML

Structure parameters

Formula	C38 H39 Cl3.88 N5 O4 Pd1.94
Calculated formula	C38 H39 Cl3.882 N5 O4 Pd1.941
Title of publication	A new rhodamine based colorimetric 'off-on' fluorescence sensor selective for Pd2+ along with the first bound X-ray crystal structure
Authors of publication	Shyamaprosad Goswami; Debabrata Sen; Nirmal Kumar Das; Hoong-Kun Fun; Ching Kheng Quah
Journal of publication	Chem.Commun.
Year of publication	2011
Journal volume	47
Pages of publication	9101
a	21.8033 ± 0.0004 Å
b	16.4269 ± 0.0003 Å
c	22.7565 ± 0.0005 Å
α	90°
β	103.155 ± 0.001°
γ	90°
Cell volume	7936.6 ± 0.3 Å³
Cell temperature	100 K
Ambient diffraction temperature	100 ± 0.1 K
Number of distinct elements	6
Space group number	15
Hermann-Mauguin space group symbol	C 1 2/c 1
Hall space group symbol	-C 2yc
Residual factor for all reflections	0.1956
Residual factor for significantly intense reflections	0.1176
Weighted residual factors for significantly intense reflections	0.2851
Weighted residual factors for all reflections included in the refinement	0.3417
Goodness-of-fit parameter for all reflections included in the refinement	1.032
Diffraction radiation wavelength	0.71073 Å
Diffraction radiation type	MoKα
Has coordinates	Yes
Has disorder	Yes
Has F_obs	No

Version history

Revision	Date	Message	Files
180171 (current)	2016-03-26	cif/7/10/ (antanas@kurmis) Replacing _[local]_cod_* tags with their equivalents from the COD CIF dictionary in multiple entries in subrange 7/10/67.	7106742.cif
106525	2014-03-15	cif/ (saulius@koala.ibt.lt) Adding DOIs to those Chem. Comm. structure descriptions that did not have it before and that could be matched unambiguously. Unambiguously means: a) journal name is "like 'Chem%Com%'" in SQl parlour b) first author's last name is the same in COD and in PubMed b) publication year and first page are the same in COD and in PubMed database. The commands to change these files where: awk '{print $1, $2}' outputs/join-dois.tab \ \| xargs -i sh -c ' CODID=$(echo {} \| awk "{print \$1}"); DOI=$(echo {} \| awk "{print \$2}"); CODFILE=$(echo $CODID \| codid2file); if ! grep -q _journal_paper_doi $CODFILE; then ( set -x; echo _journal_paper_doi $DOI >> $CODFILE ); else echo $CODID already has DOI; fi' Some files that did not had new-line at the end had to be fixed afterwards (in the ~/struct/cod/cif/7 directory, a COD working copy): svn st \ \| awk '{print $2}' \ \| xargs cifparse -q 2> /dev/null \ \| awk -F"'" '{print $2}' \ \| xargs perl -i -pe 's/_journal_paper_doi/\n_journal_paper_doi/' The working copy containing 'outputs/join-dois.tab' was: Path: /home/saulius/struct/xyz-extraction/dois/chem-comm-refetched-from-pubmed URL: svn+ssh://pitonas.ibt.lt/home/xray/svn-repositories/xyz-extraction/dois/chem-comm-refetched-from-pubmed Repository Root: svn+ssh://pitonas.ibt.lt/home/xray/svn-repositories/xyz-extraction Repository UUID: 9acf3947-1f02-0410-ae2a-984b57ad209b Revision: 2871 Node Kind: directory Schedule: normal Last Changed Author: saulius Last Changed Rev: 2871 Last Changed Date: 2014-03-15 11:18:46 +0200 (Sat, 15 Mar 2014) Three conflicts in files 10/81/7108128.cif, 10/81/7108130.cif and 10/99/7109903.cif were resolved manually.	7106742.cif
35909	2012-02-26	cif/7/: reorganising range 7 into a prefix-directory tree.	7106742.cif
24505	2011-08-25	../uploads/cif-deposit/cod/cif Adding structures of 7106742 via cif-deposit CGI script.	7106742.cif